RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 SLC4A3P48751 1232 aa19.96■□□□□ 0.79
USP43-204ENST00000573955 CHMP4BQ9H444 224 aaKnown RBP19.96■□□□□ 0.79
USP43-204ENST00000573955 MPRIPQ6WCQ1 1025 aa19.96■□□□□ 0.79
USP43-204ENST00000573955 KIF1AQ12756 1690 aa19.95■□□□□ 0.78
USP43-204ENST00000573955 ANKRD45Q5TZF3 282 aa19.95■□□□□ 0.78
USP43-204ENST00000573955 STK31Q9BXU1 1019 aa19.95■□□□□ 0.78
USP43-204ENST00000573955 INTS3Q68E01 1043 aaKnown RBP19.94■□□□□ 0.78
USP43-204ENST00000573955 LRRC37A3O60309 1634 aa19.94■□□□□ 0.78
USP43-204ENST00000573955 PTPRCP08575 1304 aa19.94■□□□□ 0.78
USP43-204ENST00000573955 NUCB1Q02818 461 aa19.94■□□□□ 0.78
USP43-204ENST00000573955 MEIS3Q99687 375 aa19.93■□□□□ 0.78
USP43-204ENST00000573955 CHD1LQ86WJ1 897 aa19.92■□□□□ 0.78
USP43-204ENST00000573955 PLEKHO1Q53GL0 409 aaPredicted RBP19.92■□□□□ 0.78
USP43-204ENST00000573955 PRDM4Q9UKN5 801 aa19.92■□□□□ 0.78
USP43-204ENST00000573955 NPHP3Q7Z494 1330 aa19.92■□□□□ 0.78
USP43-204ENST00000573955 KCNQ3O43525 872 aa19.91■□□□□ 0.78
USP43-204ENST00000573955 MED1Q15648 1581 aaPredicted RBP19.91■□□□□ 0.78
USP43-204ENST00000573955 PXDNQ92626 1479 aa19.91■□□□□ 0.78
USP43-204ENST00000573955 FKBP5Q13451 457 aaPredicted RBP19.91■□□□□ 0.78
USP43-204ENST00000573955 CCDC30Q5VVM6 783 aa19.91■□□□□ 0.78
USP43-204ENST00000573955 VIRMAQ69YN4 1812 aaKnown RBP19.91■□□□□ 0.78
USP43-204ENST00000573955 RGPD5Q99666 1765 aa19.91■□□□□ 0.78
USP43-204ENST00000573955 EIF2S2P20042 333 aaKnown RBP19.9■□□□□ 0.78
USP43-204ENST00000573955 TEFQ10587 303 aa19.9■□□□□ 0.78
USP43-204ENST00000573955 DDRGK1Q96HY6 314 aa19.9■□□□□ 0.78
USP43-204ENST00000573955 NLRP2Q9NX02 1062 aa19.9■□□□□ 0.78
USP43-204ENST00000573955 PHRF1Q9P1Y6 1649 aaKnown RBP19.9■□□□□ 0.78
USP43-204ENST00000573955 C1orf141Q5JVX7 400 aa19.9■□□□□ 0.78
USP43-204ENST00000573955 AKAP4Q5JQC9 854 aa19.89■□□□□ 0.78
USP43-204ENST00000573955 ERBB3P21860 1342 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 FLIIQ13045 1269 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 CEMIPQ8WUJ3 1361 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 ALS2Q96Q42 1657 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 TAF7LQ5H9L4 462 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 HDGFL1Q5TGJ6 251 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 GCC1Q96CN9 775 aa19.89■□□□□ 0.77
USP43-204ENST00000573955 DCCP43146 1447 aa19.88■□□□□ 0.77
USP43-204ENST00000573955 APBB1O00213 710 aa19.88■□□□□ 0.77
USP43-204ENST00000573955 CSB-PGBD3P0DP91 1061 aa19.88■□□□□ 0.77
USP43-204ENST00000573955 BTBD11A6QL63 1104 aa19.87■□□□□ 0.77
USP43-204ENST00000573955 AMOTQ4VCS5 1084 aa19.87■□□□□ 0.77
USP43-204ENST00000573955 PHAXQ9H814 394 aaKnown RBP19.86■□□□□ 0.77
USP43-204ENST00000573955 SPATA31A3Q5VYP0 1347 aa19.86■□□□□ 0.77
USP43-204ENST00000573955 RNMTO43148 476 aaKnown RBP19.85■□□□□ 0.77
USP43-204ENST00000573955 EIF4A1P60842 406 aaKnown RBP19.85■□□□□ 0.77
USP43-204ENST00000573955 CEP85Q6P2H3 762 aa19.85■□□□□ 0.77
USP43-204ENST00000573955 ANXA1P04083 346 aa19.84■□□□□ 0.77
USP43-204ENST00000573955 MFAP1P55081 439 aaKnown RBP19.84■□□□□ 0.77
USP43-204ENST00000573955 ARXQ96QS3 562 aa19.84■□□□□ 0.77
USP43-204ENST00000573955 TNS3Q68CZ2 1445 aa19.84■□□□□ 0.77
USP43-204ENST00000573955 ATP10DQ9P241 1426 aa19.84■□□□□ 0.77
USP43-204ENST00000573955 BABAM1Q9NWV8 329 aa19.84■□□□□ 0.77
USP43-204ENST00000573955 FAM208AQ9UK61 1670 aaKnown RBP19.84■□□□□ 0.77
USP43-204ENST00000573955 NCOA3Q9Y6Q9 1424 aa19.83■□□□□ 0.77
USP43-204ENST00000573955 ANKRD44Q8N8A2 993 aa19.83■□□□□ 0.77
USP43-204ENST00000573955 RAPGEF4Q8WZA2 1011 aa19.83■□□□□ 0.77
USP43-204ENST00000573955 UPF2Q9HAU5 1272 aaKnown RBP19.83■□□□□ 0.77
USP43-204ENST00000573955 CCT4P50991 539 aaKnown RBP19.83■□□□□ 0.76
USP43-204ENST00000573955 PDCL3Q9H2J4 239 aa19.82■□□□□ 0.76
USP43-204ENST00000573955 CHPF2Q9P2E5 772 aa19.82■□□□□ 0.76
USP43-204ENST00000573955 NCAPD2Q15021 1401 aa19.81■□□□□ 0.76
USP43-204ENST00000573955 CLCN1P35523 988 aa19.81■□□□□ 0.76
USP43-204ENST00000573955 LMO7Q8WWI1 1683 aa19.81■□□□□ 0.76
USP43-204ENST00000573955 RPAP2Q8IXW5 612 aaPredicted RBP19.8■□□□□ 0.76
USP43-204ENST00000573955 C16orf71Q8IYS4 520 aaPredicted RBP19.8■□□□□ 0.76
USP43-204ENST00000573955 DCTPP1Q9H773 170 aa19.8■□□□□ 0.76
USP43-204ENST00000573955 PRAMEF22A3QJZ6 481 aa19.8■□□□□ 0.76
USP43-204ENST00000573955 SMARCA5O60264 1052 aaPredicted RBP19.8■□□□□ 0.76
USP43-204ENST00000573955 TATP17735 454 aaPredicted RBP19.78■□□□□ 0.76
USP43-204ENST00000573955 PIP4K2BP78356 416 aa19.78■□□□□ 0.76
USP43-204ENST00000573955 PRDM11Q9NQV5 511 aa19.78■□□□□ 0.76
USP43-204ENST00000573955 TBC1D32Q96NH3 1257 aa19.77■□□□□ 0.76
USP43-204ENST00000573955 SLC39A6Q13433 755 aa19.77■□□□□ 0.76
USP43-204ENST00000573955 OTUD7AQ8TE49 926 aaPredicted RBP19.77■□□□□ 0.76
USP43-204ENST00000573955 STRN4Q9NRL3 753 aa19.77■□□□□ 0.76
USP43-204ENST00000573955 MEGF6O75095 1541 aa19.76■□□□□ 0.75
USP43-204ENST00000573955 GNAI2P04899 355 aa19.76■□□□□ 0.75
USP43-204ENST00000573955 KDM3BQ7LBC6 1761 aa19.76■□□□□ 0.75
USP43-204ENST00000573955 SOS1Q07889 1333 aaPredicted RBP19.76■□□□□ 0.75
USP43-204ENST00000573955 CAMTA1Q9Y6Y1 1673 aa19.76■□□□□ 0.75
USP43-204ENST00000573955 SOS2Q07890 1332 aaPredicted RBP19.76■□□□□ 0.75
USP43-204ENST00000573955 BMP2KLQ5H9B9 411 aa19.74■□□□□ 0.75
USP43-204ENST00000573955 L1TD1Q5T7N2 865 aaKnown RBP19.74■□□□□ 0.75
USP43-204ENST00000573955 BBXQ8WY36 941 aaPredicted RBP19.74■□□□□ 0.75
USP43-204ENST00000573955 EXOC6BQ9Y2D4 811 aa19.74■□□□□ 0.75
USP43-204ENST00000573955 LRRFIP2Q9Y608 721 aaKnown RBP19.74■□□□□ 0.75
USP43-204ENST00000573955 PI4KAP2A4QPH2 592 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 PROSER3Q2NL68 480 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 PLEKHM2Q8IWE5 1019 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 PI4KAP1Q8N8J0 262 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 C22orf23Q9BZE7 217 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 COL18A1P39060 1754 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 HMMRO75330 724 aa19.73■□□□□ 0.75
USP43-204ENST00000573955 FRAT2O75474 233 aaPredicted RBP19.73■□□□□ 0.75
USP43-204ENST00000573955 PNMA6EA0A0J9YXQ4 647 aa19.72■□□□□ 0.75
USP43-204ENST00000573955 GIGYF1O75420 1035 aaPredicted RBP19.72■□□□□ 0.75
USP43-204ENST00000573955 PHKG2P15735 406 aa19.72■□□□□ 0.75
USP43-204ENST00000573955 NFATC2IPQ8NCF5 419 aa19.72■□□□□ 0.75
USP43-204ENST00000573955 NAP1L2Q9ULW6 460 aaPredicted RBP19.72■□□□□ 0.75
USP43-204ENST00000573955 SPG7Q9UQ90 795 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms