RNA–Protein interactions for RNA: ENST00000573153.5

SMG6-212, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-212ENST00000573153 MRC1P22897 1456 aa23.53■■□□□ 1.36
SMG6-212ENST00000573153 ARXQ96QS3 562 aa23.52■■□□□ 1.36
SMG6-212ENST00000573153 SMIM5Q71RC9 77 aa23.51■■□□□ 1.35
SMG6-212ENST00000573153 HSP90AB1P08238 724 aaKnown RBP23.49■■□□□ 1.35
SMG6-212ENST00000573153 HMOX1P09601 288 aa23.49■■□□□ 1.35
SMG6-212ENST00000573153 TJP1Q07157 1748 aa23.48■■□□□ 1.35
SMG6-212ENST00000573153 DIAPH1O60610 1272 aaKnown RBP23.48■■□□□ 1.35
SMG6-212ENST00000573153 VIRMAQ69YN4 1812 aaKnown RBP23.47■■□□□ 1.35
SMG6-212ENST00000573153 MTHFSDQ2M296 383 aaKnown RBP23.45■■□□□ 1.34
SMG6-212ENST00000573153 MYH14Q7Z406 1995 aaKnown RBP23.44■■□□□ 1.34
SMG6-212ENST00000573153 AKAP4Q5JQC9 854 aa23.44■■□□□ 1.34
SMG6-212ENST00000573153 UTRNP46939 3433 aa23.44■■□□□ 1.34
SMG6-212ENST00000573153 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.43■■□□□ 1.34
SMG6-212ENST00000573153 ATP6V1AP38606 617 aa23.43■■□□□ 1.34
SMG6-212ENST00000573153 CNGB1Q14028 1251 aaPredicted RBP23.43■■□□□ 1.34
SMG6-212ENST00000573153 MSL1Q68DK7 614 aa23.43■■□□□ 1.34
SMG6-212ENST00000573153 LGR6Q9HBX8 967 aa23.43■■□□□ 1.34
SMG6-212ENST00000573153 C1orf141Q5JVX7 400 aa23.42■■□□□ 1.34
SMG6-212ENST00000573153 NFATC2IPQ8NCF5 419 aa23.42■■□□□ 1.34
SMG6-212ENST00000573153 AK7Q96M32 723 aa23.42■■□□□ 1.34
SMG6-212ENST00000573153 KCPQ6ZWJ8 1503 aa23.42■■□□□ 1.34
SMG6-212ENST00000573153 SSFA2P28290 1259 aa23.41■■□□□ 1.34
SMG6-212ENST00000573153 PPP2R1AP30153 589 aa23.41■■□□□ 1.34
SMG6-212ENST00000573153 CABP4P57796 275 aa23.41■■□□□ 1.34
SMG6-212ENST00000573153 FLAD1Q8NFF5 587 aa23.41■■□□□ 1.34
SMG6-212ENST00000573153 RNMTO43148 476 aaKnown RBP23.4■■□□□ 1.34
SMG6-212ENST00000573153 NLGN2Q8NFZ4 835 aa23.4■■□□□ 1.34
SMG6-212ENST00000573153 C4AP0C0L4 1744 aa23.39■■□□□ 1.34
SMG6-212ENST00000573153 CNTNAP4Q9C0A0 1308 aa23.39■■□□□ 1.34
SMG6-212ENST00000573153 POLD1P28340 1107 aa23.39■■□□□ 1.33
SMG6-212ENST00000573153 UBR2Q8IWV8 1755 aa23.39■■□□□ 1.33
SMG6-212ENST00000573153 SIPA1L3O60292 1781 aaPredicted RBP23.38■■□□□ 1.33
SMG6-212ENST00000573153 PHF14O94880 888 aa23.38■■□□□ 1.33
SMG6-212ENST00000573153 SLC52A2Q9HAB3 445 aa23.38■■□□□ 1.33
SMG6-212ENST00000573153 GNPATO15228 680 aa23.37■■□□□ 1.33
SMG6-212ENST00000573153 HMGB2P26583 209 aaKnown RBP23.37■■□□□ 1.33
SMG6-212ENST00000573153 MSH5O43196 834 aa23.36■■□□□ 1.33
SMG6-212ENST00000573153 RC3H1Q5TC82 1133 aaKnown RBP23.36■■□□□ 1.33
SMG6-212ENST00000573153 RBM42Q9BTD8 480 aaKnown RBP23.36■■□□□ 1.33
SMG6-212ENST00000573153 RSPH6AQ9H0K4 717 aa23.36■■□□□ 1.33
SMG6-212ENST00000573153 PHACTR3Q96KR7 559 aa23.34■■□□□ 1.33
SMG6-212ENST00000573153 U2SURPO15042 1029 aaKnown RBP23.33■■□□□ 1.33
SMG6-212ENST00000573153 PTCD1O75127 700 aaKnown RBP23.33■■□□□ 1.33
SMG6-212ENST00000573153 GOLGB1Q14789 3259 aaKnown RBP23.33■■□□□ 1.32
SMG6-212ENST00000573153 KIAA1551Q9HCM1 1747 aa23.33■■□□□ 1.32
SMG6-212ENST00000573153 CEMIPQ8WUJ3 1361 aa23.32■■□□□ 1.32
SMG6-212ENST00000573153 IL17REQ8NFR9 667 aa23.32■■□□□ 1.32
SMG6-212ENST00000573153 SLC39A6Q13433 755 aa23.31■■□□□ 1.32
SMG6-212ENST00000573153 RPS6KA4O75676 772 aa23.3■■□□□ 1.32
SMG6-212ENST00000573153 KIF13BQ9NQT8 1826 aa23.3■■□□□ 1.32
SMG6-212ENST00000573153 PRKAR2BP31323 418 aa23.29■■□□□ 1.32
SMG6-212ENST00000573153 CRKLP46109 303 aaKnown RBP23.29■■□□□ 1.32
SMG6-212ENST00000573153 INTS5Q6P9B9 1019 aaKnown RBP23.29■■□□□ 1.32
SMG6-212ENST00000573153 ARHGEF1Q92888 912 aaKnown RBP23.29■■□□□ 1.32
SMG6-212ENST00000573153 YY1P25490 414 aa23.28■■□□□ 1.32
SMG6-212ENST00000573153 DNAJC10Q8IXB1 793 aa23.28■■□□□ 1.32
SMG6-212ENST00000573153 KLHL34Q8N239 644 aa23.28■■□□□ 1.32
SMG6-212ENST00000573153 RTCBQ9Y3I0 505 aaKnown RBP23.28■■□□□ 1.32
SMG6-212ENST00000573153 YBX3P16989 372 aaKnown RBP eCLIP23.27■■□□□ 1.32
SMG6-212ENST00000573153 ADRA2BP18089 450 aa23.27■■□□□ 1.32
SMG6-212ENST00000573153 GAS2L2Q8NHY3 880 aa23.27■■□□□ 1.32
SMG6-212ENST00000573153 CD2APQ9Y5K6 639 aa23.27■■□□□ 1.32
SMG6-212ENST00000573153 GYS1P13807 737 aa23.26■■□□□ 1.31
SMG6-212ENST00000573153 CFAP53Q96M91 514 aa23.26■■□□□ 1.31
SMG6-212ENST00000573153 CHD4Q14839 1912 aa23.25■■□□□ 1.31
SMG6-212ENST00000573153 GNAT3A8MTJ3 354 aa23.24■■□□□ 1.31
SMG6-212ENST00000573153 CYP19A1P11511 503 aaPredicted RBP23.24■■□□□ 1.31
SMG6-212ENST00000573153 TRAPPC3LQ5T215 181 aa23.24■■□□□ 1.31
SMG6-212ENST00000573153 SOS1Q07889 1333 aaPredicted RBP23.23■■□□□ 1.31
SMG6-212ENST00000573153 C10orf71Q711Q0 1435 aa23.23■■□□□ 1.31
SMG6-212ENST00000573153 MMP10P09238 476 aa23.22■■□□□ 1.31
SMG6-212ENST00000573153 USP42Q9H9J4 1324 aaKnown RBP23.22■■□□□ 1.31
SMG6-212ENST00000573153 DCAF8L1A6NGE4 600 aa23.21■■□□□ 1.31
SMG6-212ENST00000573153 FCHSD2O94868 740 aa23.21■■□□□ 1.31
SMG6-212ENST00000573153 U2AF1L5P0DN76 240 aaPredicted RBP23.21■■□□□ 1.31
SMG6-212ENST00000573153 U2AF1Q01081 240 aaKnown RBP eCLIP23.21■■□□□ 1.31
SMG6-212ENST00000573153 SRP68Q9UHB9 627 aaKnown RBP23.21■■□□□ 1.31
SMG6-212ENST00000573153 PXDNLA1KZ92 1463 aa23.21■■□□□ 1.31
SMG6-212ENST00000573153 VSIG10Q8N0Z9 540 aa23.2■■□□□ 1.3
SMG6-212ENST00000573153 CCDC87Q9NVE4 849 aa23.2■■□□□ 1.3
SMG6-212ENST00000573153 NUDCQ9Y266 331 aa23.2■■□□□ 1.3
SMG6-212ENST00000573153 ZNF496Q96IT1 587 aaPredicted RBP23.19■■□□□ 1.3
SMG6-212ENST00000573153 ZBTB1Q9Y2K1 713 aa23.19■■□□□ 1.3
SMG6-212ENST00000573153 KCNQ3O43525 872 aa23.18■■□□□ 1.3
SMG6-212ENST00000573153 GPR162Q16538 588 aa23.18■■□□□ 1.3
SMG6-212ENST00000573153 ZNF790Q6PG37 636 aa23.18■■□□□ 1.3
SMG6-212ENST00000573153 NLGN1Q8N2Q7 840 aa23.18■■□□□ 1.3
SMG6-212ENST00000573153 PLEKHF1Q96S99 279 aa23.18■■□□□ 1.3
SMG6-212ENST00000573153 HEG1Q9ULI3 1381 aa23.17■■□□□ 1.3
SMG6-212ENST00000573153 DDR1Q08345 913 aa23.17■■□□□ 1.3
SMG6-212ENST00000573153 DLG5Q8TDM6 1919 aa23.16■■□□□ 1.3
SMG6-212ENST00000573153 BRCA1P38398 1863 aaKnown RBP23.16■■□□□ 1.3
SMG6-212ENST00000573153 RFC4P35249 363 aa23.16■■□□□ 1.3
SMG6-212ENST00000573153 FKBP8Q14318 412 aa23.16■■□□□ 1.3
SMG6-212ENST00000573153 COL15A1P39059 1388 aa23.15■■□□□ 1.3
SMG6-212ENST00000573153 BCL2L12Q9HB09 334 aa23.15■■□□□ 1.3
SMG6-212ENST00000573153 N4BP2Q86UW6 1770 aaPredicted RBP23.14■■□□□ 1.3
SMG6-212ENST00000573153 NRXN2Q9P2S2 1712 aa23.14■■□□□ 1.3
SMG6-212ENST00000573153 TEFQ10587 303 aa23.14■■□□□ 1.29
SMG6-212ENST00000573153 ZNF784Q8NCA9 323 aaPredicted RBP23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms