RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 CAMTA1Q9Y6Y1 1673 aa10.41□□□□□ -0.74
NUP88-205ENST00000572809 TMF1P82094 1093 aa10.41□□□□□ -0.74
NUP88-205ENST00000572809 SF3B2Q13435 895 aaKnown RBP10.41□□□□□ -0.74
NUP88-205ENST00000572809 KCNK17Q96T54 332 aa10.41□□□□□ -0.74
NUP88-205ENST00000572809 BRWD3Q6RI45 1802 aa10.4□□□□□ -0.74
NUP88-205ENST00000572809 NRKQ7Z2Y5 1582 aa10.4□□□□□ -0.74
NUP88-205ENST00000572809 FOXK1P85037 733 aa10.4□□□□□ -0.74
NUP88-205ENST00000572809 BARGINQ6ZT62 677 aa10.4□□□□□ -0.74
NUP88-205ENST00000572809 ARHGEF25Q86VW2 580 aa10.4□□□□□ -0.74
NUP88-205ENST00000572809 TCP11L2Q8N4U5 519 aa10.4□□□□□ -0.74
NUP88-205ENST00000572809 AATKQ6ZMQ8 1374 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 AKAP12Q02952 1782 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 CD163L1Q9NR16 1453 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 PDE3BQ13370 1112 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 FAM182BQ5T319 152 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 NME9Q86XW9 330 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 THRAP3Q9Y2W1 955 aaKnown RBP10.39□□□□□ -0.75
NUP88-205ENST00000572809 BLMP54132 1417 aaPredicted RBP10.39□□□□□ -0.75
NUP88-205ENST00000572809 USP47Q96K76 1375 aa10.39□□□□□ -0.75
NUP88-205ENST00000572809 SLIT3O75094 1523 aa10.38□□□□□ -0.75
NUP88-205ENST00000572809 PIK3C2AO00443 1686 aa10.38□□□□□ -0.75
NUP88-205ENST00000572809 TBC1D12O60347 775 aa10.38□□□□□ -0.75
NUP88-205ENST00000572809 CDCA8Q53HL2 280 aa10.38□□□□□ -0.75
NUP88-205ENST00000572809 TOM1L2Q6ZVM7 507 aa10.38□□□□□ -0.75
NUP88-205ENST00000572809 USP31Q70CQ4 1352 aa10.38□□□□□ -0.75
NUP88-205ENST00000572809 FAM196AQ6ZSG2 479 aa10.37□□□□□ -0.75
NUP88-205ENST00000572809 DEFB132Q7Z7B7 95 aa10.37□□□□□ -0.75
NUP88-205ENST00000572809 VPS9D1Q9Y2B5 631 aa10.37□□□□□ -0.75
NUP88-205ENST00000572809 LMO7Q8WWI1 1683 aa10.37□□□□□ -0.75
NUP88-205ENST00000572809 A0A1W2PP64 1363 aa10.37□□□□□ -0.75
NUP88-205ENST00000572809 NINLQ9Y2I6 1382 aa10.37□□□□□ -0.75
NUP88-205ENST00000572809 COL5A2P05997 1499 aaPredicted RBP10.36□□□□□ -0.75
NUP88-205ENST00000572809 CRB1P82279 1406 aa10.36□□□□□ -0.75
NUP88-205ENST00000572809 EDC4Q6P2E9 1401 aaKnown RBP10.36□□□□□ -0.75
NUP88-205ENST00000572809 CSB-PGBD3P0DP91 1061 aa10.36□□□□□ -0.75
NUP88-205ENST00000572809 GPHNQ9NQX3 736 aaPredicted RBP10.36□□□□□ -0.75
NUP88-205ENST00000572809 WDR17Q8IZU2 1322 aa10.35□□□□□ -0.75
NUP88-205ENST00000572809 BAG6P46379 1132 aa10.35□□□□□ -0.75
NUP88-205ENST00000572809 DSG2Q14126 1118 aa10.35□□□□□ -0.75
NUP88-205ENST00000572809 MON2Q7Z3U7 1717 aa10.35□□□□□ -0.75
NUP88-205ENST00000572809 THSD7AQ9UPZ6 1657 aa10.34□□□□□ -0.75
NUP88-205ENST00000572809 COG3Q96JB2 828 aa10.34□□□□□ -0.75
NUP88-205ENST00000572809 CARD10Q9BWT7 1032 aa10.34□□□□□ -0.75
NUP88-205ENST00000572809 IRX2Q9BZI1 471 aaPredicted RBP10.34□□□□□ -0.75
NUP88-205ENST00000572809 COL18A1P39060 1754 aa10.34□□□□□ -0.75
NUP88-205ENST00000572809 RGS20O76081 388 aa10.33□□□□□ -0.76
NUP88-205ENST00000572809 TRIM37O94972 964 aa10.33□□□□□ -0.76
NUP88-205ENST00000572809 DDB1Q16531 1140 aa10.33□□□□□ -0.76
NUP88-205ENST00000572809 CDCA7Q9BWT1 371 aaPredicted RBP10.33□□□□□ -0.76
NUP88-205ENST00000572809 ANKRD36BQ8N2N9 1353 aa10.33□□□□□ -0.76
NUP88-205ENST00000572809 C11orf95C9JLR9 678 aaPredicted RBP10.32□□□□□ -0.76
NUP88-205ENST00000572809 FYB1O15117 783 aa10.32□□□□□ -0.76
NUP88-205ENST00000572809 EIF4G2P78344 907 aaKnown RBP eCLIP10.32□□□□□ -0.76
NUP88-205ENST00000572809 EN1Q05925 392 aaPredicted RBP10.32□□□□□ -0.76
NUP88-205ENST00000572809 NFAT5O94916 1531 aa10.32□□□□□ -0.76
NUP88-205ENST00000572809 EXOC5O00471 708 aa10.31□□□□□ -0.76
NUP88-205ENST00000572809 APBA3O96018 575 aa10.31□□□□□ -0.76
NUP88-205ENST00000572809 FBLN1P23142 703 aa10.31□□□□□ -0.76
NUP88-205ENST00000572809 IP6K1Q92551 441 aa10.31□□□□□ -0.76
NUP88-205ENST00000572809 NLRP2Q9NX02 1062 aa10.31□□□□□ -0.76
NUP88-205ENST00000572809 RGPD5Q99666 1765 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 IFFO2Q5TF58 517 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 THSD4Q6ZMP0 1018 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 ZNF454Q8N9F8 522 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 ANKRD24Q8TF21 1146 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 GGNBP2Q9H3C7 697 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 OVOS2A0A0J9YW53 1432 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 OVOS2Q6IE36 1432 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 EP400Q96L91 3159 aa10.3□□□□□ -0.76
NUP88-205ENST00000572809 CCDC7Q96M83 1385 aa10.29□□□□□ -0.76
NUP88-205ENST00000572809 USP54Q70EL1 1684 aa10.29□□□□□ -0.76
NUP88-205ENST00000572809 HSPA5P11021 654 aaKnown RBP10.29□□□□□ -0.76
NUP88-205ENST00000572809 AMPHP49418 695 aa10.29□□□□□ -0.76
NUP88-205ENST00000572809 EZH2Q15910 746 aaKnown RBP10.29□□□□□ -0.76
NUP88-205ENST00000572809 POLR3GLQ9BT43 218 aa10.29□□□□□ -0.76
NUP88-205ENST00000572809 CARD14Q9BXL6 1004 aa10.29□□□□□ -0.76
NUP88-205ENST00000572809 GOLGA8CPA6NN73 597 aa10.28□□□□□ -0.76
NUP88-205ENST00000572809 MARCH10Q8NA82 808 aaPredicted RBP10.28□□□□□ -0.76
NUP88-205ENST00000572809 KCNV2Q8TDN2 545 aa10.28□□□□□ -0.76
NUP88-205ENST00000572809 LTV1Q96GA3 475 aaPredicted RBP10.28□□□□□ -0.76
NUP88-205ENST00000572809 CAMKK2Q96RR4 588 aa10.28□□□□□ -0.76
NUP88-205ENST00000572809 SLC4A5Q9BY07 1137 aa10.28□□□□□ -0.76
NUP88-205ENST00000572809 MAP3K19Q56UN5 1328 aa10.28□□□□□ -0.76
NUP88-205ENST00000572809 ABCC6O95255 1503 aa10.28□□□□□ -0.76
NUP88-205ENST00000572809 RGPD1P0DJD0 1748 aa10.27□□□□□ -0.76
NUP88-205ENST00000572809 PARP4Q9UKK3 1724 aaKnown RBP10.27□□□□□ -0.76
NUP88-205ENST00000572809 IL2RBP14784 551 aa10.27□□□□□ -0.77
NUP88-205ENST00000572809 PDE4AP27815 886 aa10.27□□□□□ -0.77
NUP88-205ENST00000572809 HOXC9P31274 260 aa10.27□□□□□ -0.77
NUP88-205ENST00000572809 RRS1Q15050 365 aaKnown RBP10.27□□□□□ -0.77
NUP88-205ENST00000572809 BCL2L12Q9HB09 334 aa10.27□□□□□ -0.77
NUP88-205ENST00000572809 BHMG1C9JSJ3 638 aaPredicted RBP10.26□□□□□ -0.77
NUP88-205ENST00000572809 TULP1O00294 542 aaPredicted RBP10.26□□□□□ -0.77
NUP88-205ENST00000572809 E2F4Q16254 413 aa10.26□□□□□ -0.77
NUP88-205ENST00000572809 OXER1Q8TDS5 423 aa10.26□□□□□ -0.77
NUP88-205ENST00000572809 ARHGEF1Q92888 912 aaKnown RBP10.26□□□□□ -0.77
NUP88-205ENST00000572809 LTN1O94822 1766 aa10.26□□□□□ -0.77
NUP88-205ENST00000572809 OVOS2A0A0G2JMS6 1433 aa10.25□□□□□ -0.77
NUP88-205ENST00000572809 DISP2A7MBM2 1401 aa10.25□□□□□ -0.77
NUP88-205ENST00000572809 WNT2BQ93097 391 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms