RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 CACTIN-AS1Q8N1I8 211 aa6.53□□□□□ -1.36
TOPBP1-210ENST00000572787 NAP1L4Q99733 375 aaKnown RBP6.53□□□□□ -1.36
TOPBP1-210ENST00000572787 FBXO9Q9UK97 447 aaPredicted RBP6.53□□□□□ -1.36
TOPBP1-210ENST00000572787 K7ELQ4 463 aaPredicted RBP6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 PIK3CDO00329 1044 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 GIGYF1O75420 1035 aaPredicted RBP6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 VIL1P09327 827 aaKnown RBP6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 BDNFP23560 247 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 ARHGAP4P98171 946 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 FKBP4Q02790 459 aaKnown RBP eCLIP6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 PDE3BQ13370 1112 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 ECM1Q16610 540 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 ODR4Q5SWX8 454 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 NBPF6Q5VWK0 638 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 SULF1Q8IWU6 871 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 MKL1Q969V6 931 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 NBPF4Q96M43 638 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 VTI1BQ9UEU0 232 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 PARP2Q9UGN5 583 aa6.52□□□□□ -1.37
TOPBP1-210ENST00000572787 ANP32CO43423 234 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 PLIN1O60240 522 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 PRPF40AO75400 957 aaKnown RBP6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 CALRP27797 417 aaKnown RBP6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 AMPD3Q01432 767 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 PCGF5Q86SE9 256 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 MCF2L2Q86YR7 1114 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 ZNF654Q8IZM8 581 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 LRRN4Q8WUT4 740 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 CEP89Q96ST8 783 aa6.51□□□□□ -1.37
TOPBP1-210ENST00000572787 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 KIF3BO15066 747 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 FMNL1O95466 1100 aaPredicted RBP6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 EVA1CP58658 441 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 DAB2P98082 770 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 HDAC1Q13547 482 aaPredicted RBP6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 ZRSR2Q15696 482 aaKnown RBP6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 ENOX2Q16206 610 aaKnown RBP6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 GPR153Q6NV75 609 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 CKAP2LQ8IYA6 745 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 IL17RAQ96F46 866 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 RBCK1Q9BYM8 510 aa6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 CXXC1Q9P0U4 656 aaPredicted RBP6.5□□□□□ -1.37
TOPBP1-210ENST00000572787 LDHBP07195 334 aaKnown RBP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 FGRP09769 529 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 LSM11P83369 360 aaKnown RBP eCLIP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 FMR1Q06787 632 aaKnown RBP eCLIP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 DPYDQ12882 1025 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 NR1H3Q13133 447 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 PSMD2Q13200 908 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 DHX8Q14562 1220 aaKnown RBP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 MAP9Q49MG5 647 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 ZNF280DQ6N043 979 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 SLF2Q8IX21 1173 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 DEPDC4Q8N2C3 294 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 CERKQ8TCT0 537 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 GTF3C2Q8WUA4 911 aaPredicted RBP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 FAM161BQ96MY7 647 aa6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 DUSP9Q99956 384 aaKnown RBP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 TTF2Q9UNY4 1162 aaKnown RBP6.49□□□□□ -1.37
TOPBP1-210ENST00000572787 C2orf72A6NCS6 295 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 TREHO43280 583 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 ZNF500O60304 480 aaPredicted RBP6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 PRMT3O60678 531 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 PHF14O94880 888 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 MAN1A1P33908 653 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 POU5F1BQ06416 359 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 SLFNL1Q499Z3 407 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 TMC7Q7Z402 723 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 FERMT3Q86UX7 667 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 EPS8L1Q8TE68 723 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 RNPC3Q96LT9 517 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 HCSTQ9UBK5 93 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 SFMBT1Q9UHJ3 866 aa6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 DDX41Q9UJV9 622 aaKnown RBP6.48□□□□□ -1.37
TOPBP1-210ENST00000572787 KIF3CO14782 793 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 CAND2O75155 1236 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 RGS20O76081 388 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 CD53P19397 219 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 COPB2P35606 906 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 SERINC3Q13530 473 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 VPS72Q15906 364 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 ARSIQ5FYB1 569 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 PADI6Q6TGC4 694 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 RINLQ6ZS11 566 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 MICALL2Q8IY33 904 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 SAMD3Q8N6K7 520 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 APBA2Q99767 749 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 IER2Q9BTL4 223 aa6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 TMX4Q9H1E5 349 aaPredicted RBP6.47□□□□□ -1.37
TOPBP1-210ENST00000572787 LDHAP00338 332 aaKnown RBP6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 LMOD3Q0VAK6 560 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 OCLNQ16625 522 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 ARSHQ5FYA8 562 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 RBM33Q96EV2 1170 aaKnown RBP6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 PRKD2Q9BZL6 878 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 CYLDQ9NQC7 956 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 ANAPC4Q9UJX5 808 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 EID1Q9Y6B2 187 aa6.46□□□□□ -1.38
TOPBP1-210ENST00000572787 DNMT3AQ9Y6K1 912 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms