RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 RTL1A6NKG5 1358 aa18.58■□□□□ 0.57
CCDC40-208ENST00000572270 LOC102724428A0A0B4J2F2 783 aa18.58■□□□□ 0.56
CCDC40-208ENST00000572270 SIK1P57059 783 aa18.58■□□□□ 0.56
CCDC40-208ENST00000572270 NLGN1Q8N2Q7 840 aa18.57■□□□□ 0.56
CCDC40-208ENST00000572270 SLC12A5Q9H2X9 1139 aa18.57■□□□□ 0.56
CCDC40-208ENST00000572270 PCDH10Q9P2E7 1040 aa18.57■□□□□ 0.56
CCDC40-208ENST00000572270 C4AP0C0L4 1744 aa18.57■□□□□ 0.56
CCDC40-208ENST00000572270 TMF1P82094 1093 aa18.56■□□□□ 0.56
CCDC40-208ENST00000572270 PIGBQ92521 554 aa18.55■□□□□ 0.56
CCDC40-208ENST00000572270 PIM2Q9P1W9 311 aa18.55■□□□□ 0.56
CCDC40-208ENST00000572270 PARP3Q9Y6F1 533 aa18.54■□□□□ 0.56
CCDC40-208ENST00000572270 CYP27B1O15528 508 aa18.53■□□□□ 0.56
CCDC40-208ENST00000572270 SBF1O95248 1867 aa18.53■□□□□ 0.56
CCDC40-208ENST00000572270 ATP6V1AP38606 617 aa18.53■□□□□ 0.56
CCDC40-208ENST00000572270 DALRD3Q5D0E6 543 aaKnown RBP18.53■□□□□ 0.56
CCDC40-208ENST00000572270 TRAPPC3LQ5T215 181 aa18.53■□□□□ 0.56
CCDC40-208ENST00000572270 DCAF5Q96JK2 942 aa18.53■□□□□ 0.56
CCDC40-208ENST00000572270 RTCBQ9Y3I0 505 aaKnown RBP18.53■□□□□ 0.56
CCDC40-208ENST00000572270 FBLN1P23142 703 aa18.52■□□□□ 0.56
CCDC40-208ENST00000572270 L3MBTL2Q969R5 705 aa18.52■□□□□ 0.56
CCDC40-208ENST00000572270 ZC3H4Q9UPT8 1303 aaKnown RBP18.51■□□□□ 0.55
CCDC40-208ENST00000572270 KCNA3P22001 575 aa18.51■□□□□ 0.55
CCDC40-208ENST00000572270 ITPK1Q13572 414 aa18.51■□□□□ 0.55
CCDC40-208ENST00000572270 VEGFAP15692 232 aaPredicted RBP18.5■□□□□ 0.55
CCDC40-208ENST00000572270 TMOD3Q9NYL9 352 aa18.5■□□□□ 0.55
CCDC40-208ENST00000572270 RRS1Q15050 365 aaKnown RBP18.49■□□□□ 0.55
CCDC40-208ENST00000572270 ADRA2BP18089 450 aa18.48■□□□□ 0.55
CCDC40-208ENST00000572270 RFC4P35249 363 aa18.47■□□□□ 0.55
CCDC40-208ENST00000572270 PRDM10Q9NQV6 1147 aa18.47■□□□□ 0.55
CCDC40-208ENST00000572270 ASAP1Q9ULH1 1129 aa18.47■□□□□ 0.55
CCDC40-208ENST00000572270 GLTPD2A6NH11 291 aa18.46■□□□□ 0.55
CCDC40-208ENST00000572270 GYS1P13807 737 aa18.46■□□□□ 0.55
CCDC40-208ENST00000572270 NKX1-1Q15270 411 aaPredicted RBP18.46■□□□□ 0.55
CCDC40-208ENST00000572270 FAM161AQ3B820 660 aa18.46■□□□□ 0.55
CCDC40-208ENST00000572270 FOXN1O15353 648 aa18.45■□□□□ 0.54
CCDC40-208ENST00000572270 ARHGEF1Q92888 912 aaKnown RBP18.45■□□□□ 0.54
CCDC40-208ENST00000572270 SPG7Q9UQ90 795 aa18.45■□□□□ 0.54
CCDC40-208ENST00000572270 INSRP06213 1382 aa18.44■□□□□ 0.54
CCDC40-208ENST00000572270 AIDAQ96BJ3 306 aa18.44■□□□□ 0.54
CCDC40-208ENST00000572270 MKRN1Q9UHC7 482 aaKnown RBP18.44■□□□□ 0.54
CCDC40-208ENST00000572270 TIAM2Q8IVF5 1701 aa18.43■□□□□ 0.54
CCDC40-208ENST00000572270 RASSF7Q02833 373 aa18.43■□□□□ 0.54
CCDC40-208ENST00000572270 CREBZFQ9NS37 354 aa18.43■□□□□ 0.54
CCDC40-208ENST00000572270 FLT4P35916 1363 aa18.42■□□□□ 0.54
CCDC40-208ENST00000572270 LMNB1P20700 586 aa18.42■□□□□ 0.54
CCDC40-208ENST00000572270 CTCFP49711 727 aaPredicted RBP18.42■□□□□ 0.54
CCDC40-208ENST00000572270 HSP90AB2PQ58FF8 381 aa18.42■□□□□ 0.54
CCDC40-208ENST00000572270 PUS7Q96PZ0 661 aaKnown RBP18.42■□□□□ 0.54
CCDC40-208ENST00000572270 KDM6AO15550 1401 aaPredicted RBP18.41■□□□□ 0.54
CCDC40-208ENST00000572270 ZNF831Q5JPB2 1677 aa18.41■□□□□ 0.54
CCDC40-208ENST00000572270 COL5A3P25940 1745 aaPredicted RBP18.41■□□□□ 0.54
CCDC40-208ENST00000572270 CHRNA5P30532 468 aa18.41■□□□□ 0.54
CCDC40-208ENST00000572270 RC3H1Q5TC82 1133 aaKnown RBP18.41■□□□□ 0.54
CCDC40-208ENST00000572270 ATG3Q9NT62 314 aa18.41■□□□□ 0.54
CCDC40-208ENST00000572270 CNTNAP4Q9C0A0 1308 aa18.4■□□□□ 0.54
CCDC40-208ENST00000572270 KDRP35968 1356 aa18.4■□□□□ 0.54
CCDC40-208ENST00000572270 RPS6KA4O75676 772 aa18.39■□□□□ 0.53
CCDC40-208ENST00000572270 RBM42Q9BTD8 480 aaKnown RBP18.39■□□□□ 0.53
CCDC40-208ENST00000572270 CARD11Q9BXL7 1154 aa18.39■□□□□ 0.53
CCDC40-208ENST00000572270 KIF24Q5T7B8 1368 aa18.39■□□□□ 0.53
CCDC40-208ENST00000572270 CCDC88AQ3V6T2 1871 aa18.37■□□□□ 0.53
CCDC40-208ENST00000572270 GGNBP2Q9H3C7 697 aa18.37■□□□□ 0.53
CCDC40-208ENST00000572270 CNTNAP1P78357 1384 aa18.37■□□□□ 0.53
CCDC40-208ENST00000572270 DPY19L2Q6NUT2 758 aa18.36■□□□□ 0.53
CCDC40-208ENST00000572270 IFNL2Q8IZJ0 200 aa18.36■□□□□ 0.53
CCDC40-208ENST00000572270 ABHD8Q96I13 439 aa18.36■□□□□ 0.53
CCDC40-208ENST00000572270 MLLT1Q03111 559 aaPredicted RBP18.35■□□□□ 0.53
CCDC40-208ENST00000572270 CHADLQ6NUI6 762 aa18.35■□□□□ 0.53
CCDC40-208ENST00000572270 NCAPD2Q15021 1401 aa18.34■□□□□ 0.53
CCDC40-208ENST00000572270 PHKG2P15735 406 aa18.34■□□□□ 0.53
CCDC40-208ENST00000572270 DDR1Q08345 913 aa18.34■□□□□ 0.53
CCDC40-208ENST00000572270 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.34■□□□□ 0.53
CCDC40-208ENST00000572270 KIF20BQ96Q89 1820 aa18.33■□□□□ 0.53
CCDC40-208ENST00000572270 FYB1O15117 783 aa18.33■□□□□ 0.52
CCDC40-208ENST00000572270 LBX1P52954 281 aa18.33■□□□□ 0.52
CCDC40-208ENST00000572270 FKBP8Q14318 412 aa18.33■□□□□ 0.52
CCDC40-208ENST00000572270 SLC4A9Q96Q91 983 aa18.33■□□□□ 0.52
CCDC40-208ENST00000572270 SRP68Q9UHB9 627 aaKnown RBP18.33■□□□□ 0.52
CCDC40-208ENST00000572270 MYH14Q7Z406 1995 aaKnown RBP18.33■□□□□ 0.52
CCDC40-208ENST00000572270 USP42Q9H9J4 1324 aaKnown RBP18.32■□□□□ 0.52
CCDC40-208ENST00000572270 POTECB2RU33 542 aa18.32■□□□□ 0.52
CCDC40-208ENST00000572270 DLEC1Q9Y238 1755 aa18.31■□□□□ 0.52
CCDC40-208ENST00000572270 TONSLQ96HA7 1378 aa18.3■□□□□ 0.52
CCDC40-208ENST00000572270 POLRMTO00411 1230 aaKnown RBP18.3■□□□□ 0.52
CCDC40-208ENST00000572270 NEUROD1Q13562 356 aa18.3■□□□□ 0.52
CCDC40-208ENST00000572270 SIN3AQ96ST3 1273 aa18.3■□□□□ 0.52
CCDC40-208ENST00000572270 VIRMAQ69YN4 1812 aaKnown RBP18.29■□□□□ 0.52
CCDC40-208ENST00000572270 TTLL6Q8N841 843 aa18.29■□□□□ 0.52
CCDC40-208ENST00000572270 ERVV-2B6SEH9 535 aa18.28■□□□□ 0.52
CCDC40-208ENST00000572270 CRKLP46109 303 aaKnown RBP18.28■□□□□ 0.52
CCDC40-208ENST00000572270 VEGFBP49765 207 aa18.28■□□□□ 0.52
CCDC40-208ENST00000572270 WBP1LQ9NX94 342 aa18.28■□□□□ 0.52
CCDC40-208ENST00000572270 DICER1Q9UPY3 1922 aaKnown RBP18.27■□□□□ 0.52
CCDC40-208ENST00000572270 CCDC85CA6NKD9 419 aa18.27■□□□□ 0.52
CCDC40-208ENST00000572270 PPM1GO15355 546 aaPredicted RBP18.27■□□□□ 0.52
CCDC40-208ENST00000572270 EMILIN1Q9Y6C2 1016 aa18.27■□□□□ 0.52
CCDC40-208ENST00000572270 AFDNP55196 1824 aaKnown RBP18.26■□□□□ 0.51
CCDC40-208ENST00000572270 NFKBIEO00221 500 aa18.26■□□□□ 0.51
CCDC40-208ENST00000572270 ZPR1O75312 459 aa18.26■□□□□ 0.51
CCDC40-208ENST00000572270 TM4SF1P30408 202 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms