RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 WASHC2AQ641Q2 1341 aa27.6■■■□□ 2.01
CCDC40-206ENST00000572083 N4BP2Q86UW6 1770 aaPredicted RBP27.59■■■□□ 2.01
CCDC40-206ENST00000572083 KIF13BQ9NQT8 1826 aa27.59■■■□□ 2.01
CCDC40-206ENST00000572083 IFNL2Q8IZJ0 200 aa27.58■■■□□ 2.01
CCDC40-206ENST00000572083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.58■■■□□ 2.01
CCDC40-206ENST00000572083 ATG3Q9NT62 314 aa27.57■■■□□ 2
CCDC40-206ENST00000572083 KDRP35968 1356 aa27.56■■■□□ 2
CCDC40-206ENST00000572083 BCS1LQ9Y276 419 aa27.54■■■□□ 2
CCDC40-206ENST00000572083 C10orf71Q711Q0 1435 aa27.53■■■□□ 2
CCDC40-206ENST00000572083 A0A0G2JLW4 131 aa27.52■■■□□ 2
CCDC40-206ENST00000572083 POLKQ9UBT6 870 aa27.52■■■□□ 2
CCDC40-206ENST00000572083 RTCBQ9Y3I0 505 aaKnown RBP27.52■■■□□ 2
CCDC40-206ENST00000572083 COL5A3P25940 1745 aaPredicted RBP27.51■■□□□ 1.99
CCDC40-206ENST00000572083 TRAPPC3LQ5T215 181 aa27.51■■□□□ 1.99
CCDC40-206ENST00000572083 SLC4A9Q96Q91 983 aa27.51■■□□□ 1.99
CCDC40-206ENST00000572083 TGFB2P61812 414 aa27.5■■□□□ 1.99
CCDC40-206ENST00000572083 EIF4A2Q14240 407 aaKnown RBP27.5■■□□□ 1.99
CCDC40-206ENST00000572083 RBM42Q9BTD8 480 aaKnown RBP27.5■■□□□ 1.99
CCDC40-206ENST00000572083 C4AP0C0L4 1744 aa27.5■■□□□ 1.99
CCDC40-206ENST00000572083 TNNT2P45379 298 aaPredicted RBP27.49■■□□□ 1.99
CCDC40-206ENST00000572083 ZNF831Q5JPB2 1677 aa27.49■■□□□ 1.99
CCDC40-206ENST00000572083 NLGN1Q8N2Q7 840 aa27.48■■□□□ 1.99
CCDC40-206ENST00000572083 ARHGEF1Q92888 912 aaKnown RBP27.47■■□□□ 1.99
CCDC40-206ENST00000572083 DPEP1P16444 411 aa27.46■■□□□ 1.99
CCDC40-206ENST00000572083 APLP1P51693 650 aa27.46■■□□□ 1.99
CCDC40-206ENST00000572083 ARHGAP27Q6ZUM4 889 aa27.46■■□□□ 1.99
CCDC40-206ENST00000572083 CCDC87Q9NVE4 849 aa27.46■■□□□ 1.99
CCDC40-206ENST00000572083 BRCA1P38398 1863 aaKnown RBP27.46■■□□□ 1.99
CCDC40-206ENST00000572083 GYS1P13807 737 aa27.45■■□□□ 1.98
CCDC40-206ENST00000572083 TOMM70O94826 608 aa27.44■■□□□ 1.98
CCDC40-206ENST00000572083 FCHSD2O94868 740 aa27.44■■□□□ 1.98
CCDC40-206ENST00000572083 PLEKHG2Q9H7P9 1386 aa27.44■■□□□ 1.98
CCDC40-206ENST00000572083 CNTNAP4Q9C0A0 1308 aa27.43■■□□□ 1.98
CCDC40-206ENST00000572083 KDM6AO15550 1401 aaPredicted RBP27.43■■□□□ 1.98
CCDC40-206ENST00000572083 ERVV-2B6SEH9 535 aa27.43■■□□□ 1.98
CCDC40-206ENST00000572083 ADRA2BP18089 450 aa27.43■■□□□ 1.98
CCDC40-206ENST00000572083 RFC4P35249 363 aa27.43■■□□□ 1.98
CCDC40-206ENST00000572083 RC3H1Q5TC82 1133 aaKnown RBP27.43■■□□□ 1.98
CCDC40-206ENST00000572083 NMRK2Q9NPI5 230 aa27.43■■□□□ 1.98
CCDC40-206ENST00000572083 DCAF5Q96JK2 942 aa27.42■■□□□ 1.98
CCDC40-206ENST00000572083 POLR3GLQ9BT43 218 aa27.42■■□□□ 1.98
CCDC40-206ENST00000572083 PARP3Q9Y6F1 533 aa27.42■■□□□ 1.98
CCDC40-206ENST00000572083 MYH14Q7Z406 1995 aaKnown RBP27.4■■□□□ 1.98
CCDC40-206ENST00000572083 RPS6KA4O75676 772 aa27.4■■□□□ 1.98
CCDC40-206ENST00000572083 HSP90AB1P08238 724 aaKnown RBP27.39■■□□□ 1.98
CCDC40-206ENST00000572083 CABP4P57796 275 aa27.38■■□□□ 1.97
CCDC40-206ENST00000572083 ZNF530Q6P9A1 599 aaPredicted RBP27.38■■□□□ 1.97
CCDC40-206ENST00000572083 ARFGEF1Q9Y6D6 1849 aa27.38■■□□□ 1.97
CCDC40-206ENST00000572083 KCNA3P22001 575 aa27.37■■□□□ 1.97
CCDC40-206ENST00000572083 C9orf131Q5VYM1 1079 aa27.37■■□□□ 1.97
CCDC40-206ENST00000572083 DNAJC5GQ8N7S2 189 aa27.37■■□□□ 1.97
CCDC40-206ENST00000572083 WDR90Q96KV7 1748 aa27.37■■□□□ 1.97
CCDC40-206ENST00000572083 PTCD1O75127 700 aaKnown RBP27.36■■□□□ 1.97
CCDC40-206ENST00000572083 PLEKHO1Q53GL0 409 aaPredicted RBP27.36■■□□□ 1.97
CCDC40-206ENST00000572083 SRP68Q9UHB9 627 aaKnown RBP27.35■■□□□ 1.97
CCDC40-206ENST00000572083 TJP1Q07157 1748 aa27.34■■□□□ 1.97
CCDC40-206ENST00000572083 CRKLP46109 303 aaKnown RBP27.33■■□□□ 1.97
CCDC40-206ENST00000572083 KCPQ6ZWJ8 1503 aa27.32■■□□□ 1.96
CCDC40-206ENST00000572083 AEBP1Q8IUX7 1158 aa27.32■■□□□ 1.96
CCDC40-206ENST00000572083 PIM2Q9P1W9 311 aa27.32■■□□□ 1.96
CCDC40-206ENST00000572083 MTHFSP49914 203 aa27.31■■□□□ 1.96
CCDC40-206ENST00000572083 DDR1Q08345 913 aa27.31■■□□□ 1.96
CCDC40-206ENST00000572083 FKBP8Q14318 412 aa27.31■■□□□ 1.96
CCDC40-206ENST00000572083 AMOTQ4VCS5 1084 aa27.31■■□□□ 1.96
CCDC40-206ENST00000572083 C16orf71Q8IYS4 520 aaPredicted RBP27.31■■□□□ 1.96
CCDC40-206ENST00000572083 USP42Q9H9J4 1324 aaKnown RBP27.31■■□□□ 1.96
CCDC40-206ENST00000572083 HTRA3P83110 453 aa27.3■■□□□ 1.96
CCDC40-206ENST00000572083 RBM46Q8TBY0 533 aaKnown RBP27.3■■□□□ 1.96
CCDC40-206ENST00000572083 DALRD3Q5D0E6 543 aaKnown RBP27.29■■□□□ 1.96
CCDC40-206ENST00000572083 C1orf141Q5JVX7 400 aa27.29■■□□□ 1.96
CCDC40-206ENST00000572083 NFATC2IPQ8NCF5 419 aa27.29■■□□□ 1.96
CCDC40-206ENST00000572083 CHRNA5P30532 468 aa27.28■■□□□ 1.96
CCDC40-206ENST00000572083 RNF181Q9P0P0 153 aa27.28■■□□□ 1.96
CCDC40-206ENST00000572083 PCNTO95613 3336 aa27.27■■□□□ 1.96
CCDC40-206ENST00000572083 ADAMTS7Q9UKP4 1686 aa27.27■■□□□ 1.96
CCDC40-206ENST00000572083 KDM2BQ8NHM5 1336 aa27.25■■□□□ 1.95
CCDC40-206ENST00000572083 TNRC6CQ9HCJ0 1690 aaKnown RBP27.24■■□□□ 1.95
CCDC40-206ENST00000572083 SCN11AQ9UI33 1791 aa27.24■■□□□ 1.95
CCDC40-206ENST00000572083 POLRMTO00411 1230 aaKnown RBP27.23■■□□□ 1.95
CCDC40-206ENST00000572083 KLRG1Q96E93 195 aa27.23■■□□□ 1.95
CCDC40-206ENST00000572083 PANK3Q9H999 370 aa27.23■■□□□ 1.95
CCDC40-206ENST00000572083 SBF1O95248 1867 aa27.22■■□□□ 1.95
CCDC40-206ENST00000572083 FSTL1Q12841 308 aa27.22■■□□□ 1.95
CCDC40-206ENST00000572083 SULT6B1Q6IMI4 303 aa27.22■■□□□ 1.95
CCDC40-206ENST00000572083 INTS5Q6P9B9 1019 aaKnown RBP27.22■■□□□ 1.95
CCDC40-206ENST00000572083 RRAGCQ9HB90 399 aa27.22■■□□□ 1.95
CCDC40-206ENST00000572083 RASSF7Q02833 373 aa27.19■■□□□ 1.94
CCDC40-206ENST00000572083 MORC1Q86VD1 984 aa27.19■■□□□ 1.94
CCDC40-206ENST00000572083 DNAJC10Q8IXB1 793 aa27.19■■□□□ 1.94
CCDC40-206ENST00000572083 ZPR1O75312 459 aa27.18■■□□□ 1.94
CCDC40-206ENST00000572083 TM4SF1P30408 202 aa27.18■■□□□ 1.94
CCDC40-206ENST00000572083 USPL1Q5W0Q7 1092 aa27.18■■□□□ 1.94
CCDC40-206ENST00000572083 TIMELESSQ9UNS1 1208 aa27.18■■□□□ 1.94
CCDC40-206ENST00000572083 AFDNP55196 1824 aaKnown RBP27.17■■□□□ 1.94
CCDC40-206ENST00000572083 SOS1Q07889 1333 aaPredicted RBP27.16■■□□□ 1.94
CCDC40-206ENST00000572083 JMYQ8N9B5 988 aa27.16■■□□□ 1.94
CCDC40-206ENST00000572083 TRIM26Q12899 539 aaPredicted RBP27.15■■□□□ 1.94
CCDC40-206ENST00000572083 COL13A1Q5TAT6 717 aaPredicted RBP27.15■■□□□ 1.94
CCDC40-206ENST00000572083 SLC52A2Q9HAB3 445 aa27.14■■□□□ 1.94
CCDC40-206ENST00000572083 NRXN2Q9P2S2 1712 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms