RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 DEFB115Q30KQ5 88 aa10.31□□□□□ -0.76
CHD3-213ENST00000571249 ZNF219Q9P2Y4 722 aaPredicted RBP10.31□□□□□ -0.76
CHD3-213ENST00000571249 BRCA1P38398 1863 aaKnown RBP10.3□□□□□ -0.76
CHD3-213ENST00000571249 RASSF10A6NK89 507 aa10.29□□□□□ -0.76
CHD3-213ENST00000571249 CHRNA5P30532 468 aa10.29□□□□□ -0.76
CHD3-213ENST00000571249 CASP8AP2Q9UKL3 1982 aa10.28□□□□□ -0.76
CHD3-213ENST00000571249 ARFGEF1Q9Y6D6 1849 aa10.28□□□□□ -0.76
CHD3-213ENST00000571249 DOT1LQ8TEK3 1739 aa10.28□□□□□ -0.76
CHD3-213ENST00000571249 ITGBL1O95965 494 aaPredicted RBP10.28□□□□□ -0.76
CHD3-213ENST00000571249 LMNB1P20700 586 aa10.28□□□□□ -0.76
CHD3-213ENST00000571249 VSIG10Q8N0Z9 540 aa10.28□□□□□ -0.76
CHD3-213ENST00000571249 ZC3H4Q9UPT8 1303 aaKnown RBP10.28□□□□□ -0.76
CHD3-213ENST00000571249 KDM6AO15550 1401 aaPredicted RBP10.27□□□□□ -0.77
CHD3-213ENST00000571249 SSFA2P28290 1259 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 HOXD11P31277 338 aaPredicted RBP10.27□□□□□ -0.77
CHD3-213ENST00000571249 KCNH5Q8NCM2 988 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 LINC00116Q8NCU8 138 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 ANKRD24Q8TF21 1146 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 CABP2Q9NPB3 220 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 CCDC87Q9NVE4 849 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 CABP1Q9NZU7 370 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 C4BP0C0L5 1744 aa10.27□□□□□ -0.77
CHD3-213ENST00000571249 PALLDQ8WX93 1383 aa10.26□□□□□ -0.77
CHD3-213ENST00000571249 UBR3Q6ZT12 1888 aa10.26□□□□□ -0.77
CHD3-213ENST00000571249 FXR1P51114 621 aaKnown RBP eCLIP10.26□□□□□ -0.77
CHD3-213ENST00000571249 GRM1Q13255 1194 aa10.26□□□□□ -0.77
CHD3-213ENST00000571249 BEGAINQ9BUH8 593 aa10.26□□□□□ -0.77
CHD3-213ENST00000571249 TAF1LQ8IZX4 1826 aa10.26□□□□□ -0.77
CHD3-213ENST00000571249 GNPATO15228 680 aa10.25□□□□□ -0.77
CHD3-213ENST00000571249 TMF1P82094 1093 aa10.24□□□□□ -0.77
CHD3-213ENST00000571249 DPY19L2Q6NUT2 758 aa10.24□□□□□ -0.77
CHD3-213ENST00000571249 MPRIPQ6WCQ1 1025 aa10.24□□□□□ -0.77
CHD3-213ENST00000571249 GCC1Q96CN9 775 aa10.24□□□□□ -0.77
CHD3-213ENST00000571249 FBXO3Q9UK99 471 aa10.24□□□□□ -0.77
CHD3-213ENST00000571249 ABT1Q9ULW3 272 aaKnown RBP10.24□□□□□ -0.77
CHD3-213ENST00000571249 DDNO94850 711 aaPredicted RBP10.23□□□□□ -0.77
CHD3-213ENST00000571249 SRPK2P78362 688 aaKnown RBP10.23□□□□□ -0.77
CHD3-213ENST00000571249 ZCRB1Q8TBF4 217 aaKnown RBP10.23□□□□□ -0.77
CHD3-213ENST00000571249 GPR101Q96P66 508 aaPredicted RBP10.23□□□□□ -0.77
CHD3-213ENST00000571249 NSD3Q9BZ95 1437 aa10.23□□□□□ -0.77
CHD3-213ENST00000571249 NFAT5O94916 1531 aa10.23□□□□□ -0.77
CHD3-213ENST00000571249 AOC2O75106 756 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 CYP4F22Q6NT55 531 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 PAXIP1Q6ZW49 1069 aaPredicted RBP10.22□□□□□ -0.77
CHD3-213ENST00000571249 NLGN1Q8N2Q7 840 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 SLC17A8Q8NDX2 589 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 LTV1Q96GA3 475 aaPredicted RBP10.22□□□□□ -0.77
CHD3-213ENST00000571249 CAPNS2Q96L46 248 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 PARP3Q9Y6F1 533 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 TTC21BQ7Z4L5 1316 aa10.22□□□□□ -0.77
CHD3-213ENST00000571249 NFKBIEO00221 500 aa10.21□□□□□ -0.77
CHD3-213ENST00000571249 ITPK1Q13572 414 aa10.21□□□□□ -0.77
CHD3-213ENST00000571249 LDHDQ86WU2 507 aa10.21□□□□□ -0.77
CHD3-213ENST00000571249 KDM2AQ9Y2K7 1162 aa10.21□□□□□ -0.77
CHD3-213ENST00000571249 GYS1P13807 737 aa10.2□□□□□ -0.78
CHD3-213ENST00000571249 FMR1Q06787 632 aaKnown RBP eCLIP10.2□□□□□ -0.78
CHD3-213ENST00000571249 LTBP1Q14766 1721 aa10.2□□□□□ -0.78
CHD3-213ENST00000571249 EAPPQ56P03 285 aaPredicted RBP10.19□□□□□ -0.78
CHD3-213ENST00000571249 TRAPPC3LQ5T215 181 aa10.19□□□□□ -0.78
CHD3-213ENST00000571249 MAP1SQ66K74 1059 aaPredicted RBP10.19□□□□□ -0.78
CHD3-213ENST00000571249 TRIOBPQ9H2D6 2365 aa10.19□□□□□ -0.78
CHD3-213ENST00000571249 CCDC88AQ3V6T2 1871 aa10.19□□□□□ -0.78
CHD3-213ENST00000571249 C4AP0C0L4 1744 aa10.19□□□□□ -0.78
CHD3-213ENST00000571249 MKI67P46013 3256 aaKnown RBP10.18□□□□□ -0.78
CHD3-213ENST00000571249 HMGB2P26583 209 aaKnown RBP10.18□□□□□ -0.78
CHD3-213ENST00000571249 NBPF1Q3BBV0 1214 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 ERFEQ4G0M1 354 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 CNTROBQ8N137 903 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 NBPF15Q8N660 670 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 ARHGEF1Q92888 912 aaKnown RBP10.18□□□□□ -0.78
CHD3-213ENST00000571249 MPHOSPH9Q99550 1183 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 TAF1DQ9H5J8 278 aaPredicted RBP10.18□□□□□ -0.78
CHD3-213ENST00000571249 CLEC11AQ9Y240 323 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 TIAM2Q8IVF5 1701 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 COL6A3P12111 3177 aa10.18□□□□□ -0.78
CHD3-213ENST00000571249 LOC102724428A0A0B4J2F2 783 aa10.17□□□□□ -0.78
CHD3-213ENST00000571249 SIK1P57059 783 aa10.17□□□□□ -0.78
CHD3-213ENST00000571249 TPRNQ4KMQ1 711 aa10.17□□□□□ -0.78
CHD3-213ENST00000571249 DDR1Q08345 913 aa10.16□□□□□ -0.78
CHD3-213ENST00000571249 PIGBQ92521 554 aa10.16□□□□□ -0.78
CHD3-213ENST00000571249 SMARCC1Q92922 1105 aaPredicted RBP10.16□□□□□ -0.78
CHD3-213ENST00000571249 PITPNM2Q9BZ72 1349 aa10.15□□□□□ -0.78
CHD3-213ENST00000571249 MEGF6O75095 1541 aa10.15□□□□□ -0.78
CHD3-213ENST00000571249 THSD7BQ9C0I4 1608 aa10.15□□□□□ -0.79
CHD3-213ENST00000571249 ATP6V1AP38606 617 aa10.14□□□□□ -0.79
CHD3-213ENST00000571249 ECE1P42892 770 aa10.14□□□□□ -0.79
CHD3-213ENST00000571249 RTCBQ9Y3I0 505 aaKnown RBP10.14□□□□□ -0.79
CHD3-213ENST00000571249 CEP290O15078 2479 aa10.14□□□□□ -0.79
CHD3-213ENST00000571249 MAP2K2P36507 400 aa10.13□□□□□ -0.79
CHD3-213ENST00000571249 PPARGC1BQ86YN6 1023 aaKnown RBP10.13□□□□□ -0.79
CHD3-213ENST00000571249 DDX21Q9NR30 783 aaKnown RBP eCLIP10.13□□□□□ -0.79
CHD3-213ENST00000571249 SRP68Q9UHB9 627 aaKnown RBP10.13□□□□□ -0.79
CHD3-213ENST00000571249 BRCA2P51587 3418 aa10.13□□□□□ -0.79
CHD3-213ENST00000571249 IQCA1LA6NCM1 817 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 CA12O43570 354 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 RFC4P35249 363 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 CST9Q5W186 159 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 CIAPIN1Q6FI81 312 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.12□□□□□ -0.79
CHD3-213ENST00000571249 USHBP1Q8N6Y0 703 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms