RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 PRKRIP1Q9H875 184 aaPredicted RBP4.55□□□□□ -1.68
SMG6-208ENST00000570874 C14orf93Q9H972 538 aaKnown RBP4.55□□□□□ -1.68
SMG6-208ENST00000570874 JADE2Q9NQC1 790 aa4.55□□□□□ -1.68
SMG6-208ENST00000570874 KLHL42Q9P2K6 505 aa4.55□□□□□ -1.68
SMG6-208ENST00000570874 VIRMAQ69YN4 1812 aaKnown RBP4.55□□□□□ -1.68
SMG6-208ENST00000570874 ZFYVE9O95405 1425 aa4.55□□□□□ -1.68
SMG6-208ENST00000570874 RIMS2Q9UQ26 1411 aa4.55□□□□□ -1.68
SMG6-208ENST00000570874 USP32Q8NFA0 1604 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 hCG_2014768A0A024R1R8 64 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 SENP3-EIF4A1A0A087X0R7 540 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 CCER2I3L3R5 266 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 EXOC5O00471 708 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 ZNF16P17020 682 aaPredicted RBP4.54□□□□□ -1.68
SMG6-208ENST00000570874 APLP1P51693 650 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 FOXD4Q12950 439 aaPredicted RBP4.54□□□□□ -1.68
SMG6-208ENST00000570874 SKIV2LQ15477 1246 aaKnown RBP4.54□□□□□ -1.68
SMG6-208ENST00000570874 DPH6Q7L8W6 267 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 SDR16C5Q8N3Y7 309 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.54□□□□□ -1.687e-7■■■■■ 109.2
SMG6-208ENST00000570874 TRAK1Q9UPV9 953 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 STRCP1A6NGW2 1772 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 NALCNQ8IZF0 1738 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 TOPAZ1Q8N9V7 1692 aa4.54□□□□□ -1.68
SMG6-208ENST00000570874 TNRQ92752 1358 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 CEP170BQ9Y4F5 1589 aaPredicted RBP4.53□□□□□ -1.68
SMG6-208ENST00000570874 RPGRIP1LQ68CZ1 1315 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 XRN1Q8IZH2 1706 aaKnown RBP4.53□□□□□ -1.68
SMG6-208ENST00000570874 FMN2Q9NZ56 1722 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 MARF1Q9Y4F3 1742 aaKnown RBP4.53□□□□□ -1.68
SMG6-208ENST00000570874 TBC1D12O60347 775 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 GSE1Q14687 1217 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 CLEC4GQ6UXB4 293 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 SPOCK3Q9BQ16 436 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 PANK3Q9H999 370 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 ZSWIM6Q9HCJ5 1215 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.53□□□□□ -1.68
SMG6-208ENST00000570874 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.53□□□□□ -1.68
SMG6-208ENST00000570874 STK24Q9Y6E0 443 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 RPS6KL1Q9Y6S9 549 aa4.53□□□□□ -1.68
SMG6-208ENST00000570874 PLEKHH1Q9ULM0 1364 aa4.53□□□□□ -1.69
SMG6-208ENST00000570874 CPS1P31327 1500 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 XIRP1Q702N8 1843 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 TTC36A6NLP5 189 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 U2SURPO15042 1029 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 PER1O15534 1290 aaPredicted RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 IBSPP21815 317 aaPredicted RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 TMF1P82094 1093 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 SAFB2Q14151 953 aaKnown RBP eCLIP4.52□□□□□ -1.69
SMG6-208ENST00000570874 CC2D1BQ5T0F9 858 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 AXDND1Q5T1B0 1012 aaPredicted RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 CACTIN-AS1Q8N1I8 211 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 PNISRQ8TF01 805 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 EVI5LQ96CN4 794 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 CALR3Q96L12 384 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 CCDC85AQ96PX6 553 aaPredicted RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 BCL2L13Q9BXK5 485 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 KRTAP4-6Q9BYQ5 205 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 MAF1Q9H063 256 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 STK26Q9P289 416 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 PNMA2Q9UL42 364 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 COG6Q9Y2V7 657 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 SALL2Q9Y467 1007 aaPredicted RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 COMMD10Q9Y6G5 202 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 YTHDC2Q9H6S0 1430 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 EIF3AQ14152 1382 aaKnown RBP4.52□□□□□ -1.69
SMG6-208ENST00000570874 PARD3Q8TEW0 1356 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 SBNO2Q9Y2G9 1366 aa4.52□□□□□ -1.69
SMG6-208ENST00000570874 DLC1Q96QB1 1528 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 CENPJQ9HC77 1338 aaPredicted RBP4.51□□□□□ -1.69
SMG6-208ENST00000570874 RGPD2P0DJD1 1756 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 NRDCO43847 1150 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 ZRANB2O95218 330 aaKnown RBP eCLIP4.51□□□□□ -1.69
SMG6-208ENST00000570874 PARNO95453 639 aaKnown RBP4.51□□□□□ -1.69
SMG6-208ENST00000570874 PAX3P23760 479 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 GOLGA2Q08379 1002 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 PTPROQ16827 1216 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 NBPF11Q86T75 865 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 CCAR1Q8IX12 1150 aaKnown RBP4.51□□□□□ -1.69
SMG6-208ENST00000570874 LARGE2Q8N3Y3 721 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 CXorf38Q8TB03 319 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 PMM1Q92871 262 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 GPATCH3Q96I76 525 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 STAC3Q96MF2 364 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 ESF1Q9H501 851 aaKnown RBP4.51□□□□□ -1.69
SMG6-208ENST00000570874 MRS2Q9HD23 443 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 GNEQ9Y223 722 aaKnown RBP4.51□□□□□ -1.69
SMG6-208ENST00000570874 ADAMTS13Q76LX8 1427 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 NRKQ7Z2Y5 1582 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 METP08581 1390 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 SLIT1O75093 1534 aa4.51□□□□□ -1.69
SMG6-208ENST00000570874 RGPD5Q99666 1765 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 NLRP1Q9C000 1473 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 ARHGAP23Q9P227 1491 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 PTPRUQ92729 1446 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 A0A0G2JS52 829 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 SPDYE5A6NIY4 337 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 VAMP1P23763 118 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 PSME1Q06323 249 aa4.5□□□□□ -1.69
SMG6-208ENST00000570874 C4orf46Q504U0 113 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms