RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 AK7Q96M32 723 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 STRN4Q9NRL3 753 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 MTMR7Q9Y216 660 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 CCDC69A6NI79 296 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 TRIM22Q8IYM9 498 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 RUFY1Q96T51 708 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 LIMCH1Q9UPQ0 1083 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 TNNQ9UQP3 1299 aa18.12■□□□□ 0.49
CIITA-204ENST00000570546 TTC21BQ7Z4L5 1316 aa18.11■□□□□ 0.49
CIITA-204ENST00000570546 DNAAF4Q8WXU2 420 aa18.11■□□□□ 0.49
CIITA-204ENST00000570546 TEX14Q8IWB6 1497 aa18.11■□□□□ 0.49
CIITA-204ENST00000570546 XPCQ01831 940 aaPredicted RBP18.11■□□□□ 0.49
CIITA-204ENST00000570546 BOLA2Q9H3K6 86 aa18.11■□□□□ 0.49
CIITA-204ENST00000570546 CEP126Q9P2H0 1117 aa18.11■□□□□ 0.49
CIITA-204ENST00000570546 BRPF1P55201 1214 aaPredicted RBP18.1■□□□□ 0.49
CIITA-204ENST00000570546 ANKLE2Q86XL3 938 aa18.1■□□□□ 0.49
CIITA-204ENST00000570546 CAGE1Q8TC20 777 aa18.1■□□□□ 0.49
CIITA-204ENST00000570546 DACH1Q9UI36 760 aa18.1■□□□□ 0.49
CIITA-204ENST00000570546 TOM1L2Q6ZVM7 507 aa18.1■□□□□ 0.49
CIITA-204ENST00000570546 DDX54Q8TDD1 881 aaKnown RBP18.1■□□□□ 0.49
CIITA-204ENST00000570546 NACAP1Q9BZK3 213 aa18.1■□□□□ 0.49
CIITA-204ENST00000570546 CDKL5O76039 1030 aa18.1■□□□□ 0.49
CIITA-204ENST00000570546 CBFA2T2O43439 604 aa18.09■□□□□ 0.49
CIITA-204ENST00000570546 RLBP1P12271 317 aa18.09■□□□□ 0.49
CIITA-204ENST00000570546 KLHL40Q2TBA0 621 aa18.09■□□□□ 0.49
CIITA-204ENST00000570546 DENND4BO75064 1496 aaPredicted RBP18.09■□□□□ 0.49
CIITA-204ENST00000570546 FBLN1P23142 703 aa18.09■□□□□ 0.49
CIITA-204ENST00000570546 MRPL50Q8N5N7 158 aaKnown RBP18.09■□□□□ 0.49
CIITA-204ENST00000570546 SLC3A2P08195 630 aaKnown RBP18.09■□□□□ 0.49
CIITA-204ENST00000570546 TXLNAP40222 546 aa18.09■□□□□ 0.49
CIITA-204ENST00000570546 LARP1Q6PKG0 1096 aaKnown RBP18.09■□□□□ 0.49
CIITA-204ENST00000570546 KIF21AQ7Z4S6 1674 aa18.08■□□□□ 0.49
CIITA-204ENST00000570546 STK11IPQ8N1F8 1099 aa18.08■□□□□ 0.49
CIITA-204ENST00000570546 PIP4K2AP48426 406 aaPredicted RBP18.08■□□□□ 0.48
CIITA-204ENST00000570546 SCAND2PQ9GZW5 306 aaPredicted RBP18.08■□□□□ 0.48
CIITA-204ENST00000570546 POGZQ7Z3K3 1410 aa18.08■□□□□ 0.48
CIITA-204ENST00000570546 FILIP1Q7Z7B0 1213 aa18.08■□□□□ 0.48
CIITA-204ENST00000570546 TSHZ3Q63HK5 1081 aa18.08■□□□□ 0.48
CIITA-204ENST00000570546 ERCC4Q92889 916 aaPredicted RBP18.08■□□□□ 0.48
CIITA-204ENST00000570546 MAGEC2Q9UBF1 373 aaPredicted RBP18.08■□□□□ 0.48
CIITA-204ENST00000570546 GNL3LQ9NVN8 582 aaKnown RBP18.07■□□□□ 0.48
CIITA-204ENST00000570546 TCEAL9Q9UHQ7 104 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 SDSP20132 328 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 CARD14Q9BXL6 1004 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 IMMTQ16891 758 aaKnown RBP18.07■□□□□ 0.48
CIITA-204ENST00000570546 NCBP3Q53F19 620 aaKnown RBP18.07■□□□□ 0.48
CIITA-204ENST00000570546 SNX21Q969T3 373 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 MYD88Q99836 296 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 CCDC8Q9H0W5 538 aaPredicted RBP18.07■□□□□ 0.48
CIITA-204ENST00000570546 RBM27Q9P2N5 1060 aaKnown RBP18.07■□□□□ 0.48
CIITA-204ENST00000570546 ZMYM4Q5VZL5 1548 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 AMOTQ4VCS5 1084 aa18.07■□□□□ 0.48
CIITA-204ENST00000570546 GDPD2Q9HCC8 539 aa18.06■□□□□ 0.48
CIITA-204ENST00000570546 PPFIBP1Q86W92 1011 aa18.06■□□□□ 0.48
CIITA-204ENST00000570546 LARP6Q9BRS8 491 aaKnown RBP18.06■□□□□ 0.48
CIITA-204ENST00000570546 ZSCAN23Q3MJ62 389 aa18.06■□□□□ 0.48
CIITA-204ENST00000570546 NUP133Q8WUM0 1156 aa18.06■□□□□ 0.48
CIITA-204ENST00000570546 TRAPPC8Q9Y2L5 1435 aa18.06■□□□□ 0.48
CIITA-204ENST00000570546 SMTNL1A8MU46 457 aa18.05■□□□□ 0.48
CIITA-204ENST00000570546 ZC3H6P61129 1189 aaKnown RBP18.05■□□□□ 0.48
CIITA-204ENST00000570546 MPRIPQ6WCQ1 1025 aa18.05■□□□□ 0.48
CIITA-204ENST00000570546 USP25Q9UHP3 1055 aa18.05■□□□□ 0.48
CIITA-204ENST00000570546 U3KPZ7 1027 aaPredicted RBP18.05■□□□□ 0.48
CIITA-204ENST00000570546 CCDC66A2RUB6 948 aa18.05■□□□□ 0.48
CIITA-204ENST00000570546 EPS15P42566 896 aa18.05■□□□□ 0.48
CIITA-204ENST00000570546 EVI5LQ96CN4 794 aa18.04■□□□□ 0.48
CIITA-204ENST00000570546 DBF4Q9UBU7 674 aaPredicted RBP18.04■□□□□ 0.48
CIITA-204ENST00000570546 GJB2P29033 226 aa18.04■□□□□ 0.48
CIITA-204ENST00000570546 MEIS3Q99687 375 aa18.04■□□□□ 0.48
CIITA-204ENST00000570546 AMOTL2Q9Y2J4 779 aa18.04■□□□□ 0.48
CIITA-204ENST00000570546 PIK3R4Q99570 1358 aa18.04■□□□□ 0.48
CIITA-204ENST00000570546 STX6O43752 255 aa18.04■□□□□ 0.48
CIITA-204ENST00000570546 SPINK5Q9NQ38 1064 aaPredicted RBP18.04■□□□□ 0.48
CIITA-204ENST00000570546 XRCC6P12956 609 aaKnown RBP eCLIP18.03■□□□□ 0.48
CIITA-204ENST00000570546 NOM1Q5C9Z4 860 aaKnown RBP18.03■□□□□ 0.48
CIITA-204ENST00000570546 ANKRD44Q8N8A2 993 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 C8orf58Q8NAV2 365 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 ADGRL2O95490 1459 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 SEC24BO95487 1268 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 TMX3Q96JJ7 454 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 ECHDC1Q9NTX5 307 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 HYPKQ9NX55 129 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 A2MP01023 1474 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 PPP1R42Q7Z4L9 355 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 MPHOSPH8Q99549 860 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 RNF123Q5XPI4 1314 aa18.03■□□□□ 0.48
CIITA-204ENST00000570546 ACEP12821 1306 aa18.02■□□□□ 0.48
CIITA-204ENST00000570546 FAM177A1Q8N128 213 aaPredicted RBP18.02■□□□□ 0.48
CIITA-204ENST00000570546 CWC15Q9P013 229 aaKnown RBP18.02■□□□□ 0.48
CIITA-204ENST00000570546 OFD1O75665 1012 aa18.02■□□□□ 0.47
CIITA-204ENST00000570546 CCDC85AQ96PX6 553 aaPredicted RBP18.02■□□□□ 0.47
CIITA-204ENST00000570546 CDK5RAP3Q96JB5 506 aa18.02■□□□□ 0.47
CIITA-204ENST00000570546 NOL7Q9UMY1 257 aaKnown RBP18.02■□□□□ 0.47
CIITA-204ENST00000570546 CTDP1Q9Y5B0 961 aaPredicted RBP18.02■□□□□ 0.47
CIITA-204ENST00000570546 KDM2BQ8NHM5 1336 aa18.02■□□□□ 0.47
CIITA-204ENST00000570546 TDO2P48775 406 aa18.01■□□□□ 0.47
CIITA-204ENST00000570546 PDCL2Q8N4E4 241 aa18.01■□□□□ 0.47
CIITA-204ENST00000570546 HMGB1P09429 215 aaKnown RBP18.01■□□□□ 0.47
CIITA-204ENST00000570546 MAP3K2Q9Y2U5 619 aa18.01■□□□□ 0.47
CIITA-204ENST00000570546 WASF1Q92558 559 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms