RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 CD2APQ9Y5K6 639 aa11.82□□□□□ -0.52
CTDNEP1-203ENST00000570385 RBM42Q9BTD8 480 aaKnown RBP11.81□□□□□ -0.52
CTDNEP1-203ENST00000570385 IGSF1Q8N6C5 1336 aa11.81□□□□□ -0.52
CTDNEP1-203ENST00000570385 UBR3Q6ZT12 1888 aa11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 GIGYF1O75420 1035 aaPredicted RBP11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 HMGB2P26583 209 aaKnown RBP11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 SSFA2P28290 1259 aa11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 PLEKHO1Q53GL0 409 aaPredicted RBP11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 ZNF530Q6P9A1 599 aaPredicted RBP11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 SLC4A9Q96Q91 983 aa11.8□□□□□ -0.52
CTDNEP1-203ENST00000570385 MMP10P09238 476 aa11.78□□□□□ -0.52
CTDNEP1-203ENST00000570385 CABP4P57796 275 aa11.78□□□□□ -0.52
CTDNEP1-203ENST00000570385 SULT6B1Q6IMI4 303 aa11.78□□□□□ -0.52
CTDNEP1-203ENST00000570385 ZNF526Q8TF50 670 aaPredicted RBP11.78□□□□□ -0.52
CTDNEP1-203ENST00000570385 DCAF5Q96JK2 942 aa11.78□□□□□ -0.52
CTDNEP1-203ENST00000570385 KNSTRNQ9Y448 316 aa11.78□□□□□ -0.52
CTDNEP1-203ENST00000570385 ERVV-2B6SEH9 535 aa11.77□□□□□ -0.53
CTDNEP1-203ENST00000570385 PTCD1O75127 700 aaKnown RBP11.77□□□□□ -0.53
CTDNEP1-203ENST00000570385 MTHFSP49914 203 aa11.77□□□□□ -0.53
CTDNEP1-203ENST00000570385 TRAPPC3LQ5T215 181 aa11.77□□□□□ -0.53
CTDNEP1-203ENST00000570385 RTCBQ9Y3I0 505 aaKnown RBP11.77□□□□□ -0.53
CTDNEP1-203ENST00000570385 KDM6AO15550 1401 aaPredicted RBP11.77□□□□□ -0.53
CTDNEP1-203ENST00000570385 HSP90AB1P08238 724 aaKnown RBP11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 CNGB1Q14028 1251 aaPredicted RBP11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 AMOTQ4VCS5 1084 aa11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 C1orf141Q5JVX7 400 aa11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 NFATC2IPQ8NCF5 419 aa11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 ARHGEF1Q92888 912 aaKnown RBP11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 KDRP35968 1356 aa11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 ATP10DQ9P241 1426 aa11.76□□□□□ -0.53
CTDNEP1-203ENST00000570385 A0A0G2JLW4 131 aa11.74□□□□□ -0.53
CTDNEP1-203ENST00000570385 IL13P35225 146 aa11.74□□□□□ -0.53
CTDNEP1-203ENST00000570385 RPS6KA4O75676 772 aa11.73□□□□□ -0.53
CTDNEP1-203ENST00000570385 HMOX1P09601 288 aa11.73□□□□□ -0.53
CTDNEP1-203ENST00000570385 RFC4P35249 363 aa11.73□□□□□ -0.53
CTDNEP1-203ENST00000570385 AMER1Q5JTC6 1135 aaPredicted RBP11.73□□□□□ -0.53
CTDNEP1-203ENST00000570385 GPBP1L1Q9HC44 474 aaPredicted RBP11.73□□□□□ -0.53
CTDNEP1-203ENST00000570385 MYH14Q7Z406 1995 aaKnown RBP11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 KIF7Q2M1P5 1343 aa11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 GYS1P13807 737 aa11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 CC2D1BQ5T0F9 858 aaKnown RBP11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 RC3H1Q5TC82 1133 aaKnown RBP11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 NLGN1Q8N2Q7 840 aa11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 SRP68Q9UHB9 627 aaKnown RBP11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 BCS1LQ9Y276 419 aa11.72□□□□□ -0.53
CTDNEP1-203ENST00000570385 CNTNAP4Q9C0A0 1308 aa11.71□□□□□ -0.53
CTDNEP1-203ENST00000570385 CRKLP46109 303 aaKnown RBP11.71□□□□□ -0.53
CTDNEP1-203ENST00000570385 LGR6Q9HBX8 967 aa11.71□□□□□ -0.53
CTDNEP1-203ENST00000570385 CICQ96RK0 1608 aaPredicted RBP11.71□□□□□ -0.54
CTDNEP1-203ENST00000570385 PLEKHG2Q9H7P9 1386 aa11.7□□□□□ -0.54
CTDNEP1-203ENST00000570385 DPEP1P16444 411 aa11.7□□□□□ -0.54
CTDNEP1-203ENST00000570385 ADRA2BP18089 450 aa11.7□□□□□ -0.54
CTDNEP1-203ENST00000570385 SLC39A6Q13433 755 aa11.7□□□□□ -0.54
CTDNEP1-203ENST00000570385 PARP3Q9Y6F1 533 aa11.7□□□□□ -0.54
CTDNEP1-203ENST00000570385 PXDNLA1KZ92 1463 aa11.7□□□□□ -0.54
CTDNEP1-203ENST00000570385 N4BP2Q86UW6 1770 aaPredicted RBP11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 ADCY9O60503 1353 aa11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 FKBP8Q14318 412 aa11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 ARHGAP27Q6ZUM4 889 aa11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 DNAJC10Q8IXB1 793 aa11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 CCDC87Q9NVE4 849 aa11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 COL5A3P25940 1745 aaPredicted RBP11.69□□□□□ -0.54
CTDNEP1-203ENST00000570385 FCHSD2O94868 740 aa11.68□□□□□ -0.54
CTDNEP1-203ENST00000570385 TGFB2P61812 414 aa11.68□□□□□ -0.54
CTDNEP1-203ENST00000570385 AKAP4Q5JQC9 854 aa11.68□□□□□ -0.54
CTDNEP1-203ENST00000570385 INTS5Q6P9B9 1019 aaKnown RBP11.68□□□□□ -0.54
CTDNEP1-203ENST00000570385 SLC52A2Q9HAB3 445 aa11.68□□□□□ -0.54
CTDNEP1-203ENST00000570385 C10orf71Q711Q0 1435 aa11.68□□□□□ -0.54
CTDNEP1-203ENST00000570385 PER1O15534 1290 aaPredicted RBP11.67□□□□□ -0.54
CTDNEP1-203ENST00000570385 RNMTO43148 476 aaKnown RBP11.67□□□□□ -0.54
CTDNEP1-203ENST00000570385 DDR1Q08345 913 aa11.67□□□□□ -0.54
CTDNEP1-203ENST00000570385 MTHFSDQ2M296 383 aaKnown RBP11.67□□□□□ -0.54
CTDNEP1-203ENST00000570385 USP42Q9H9J4 1324 aaKnown RBP11.66□□□□□ -0.54
CTDNEP1-203ENST00000570385 ZNF831Q5JPB2 1677 aa11.66□□□□□ -0.54
CTDNEP1-203ENST00000570385 DIAPH1O60610 1272 aaKnown RBP11.66□□□□□ -0.54
CTDNEP1-203ENST00000570385 SCN11AQ9UI33 1791 aa11.66□□□□□ -0.54
CTDNEP1-203ENST00000570385 C4AP0C0L4 1744 aa11.66□□□□□ -0.54
CTDNEP1-203ENST00000570385 U2SURPO15042 1029 aaKnown RBP11.65□□□□□ -0.54
CTDNEP1-203ENST00000570385 KCNA3P22001 575 aa11.65□□□□□ -0.54
CTDNEP1-203ENST00000570385 CHRNA5P30532 468 aa11.65□□□□□ -0.54
CTDNEP1-203ENST00000570385 USPL1Q5W0Q7 1092 aa11.65□□□□□ -0.54
CTDNEP1-203ENST00000570385 TJP1Q07157 1748 aa11.65□□□□□ -0.54
CTDNEP1-203ENST00000570385 KIAA1551Q9HCM1 1747 aa11.65□□□□□ -0.54
CTDNEP1-203ENST00000570385 KIF13BQ9NQT8 1826 aa11.65□□□□□ -0.55
CTDNEP1-203ENST00000570385 KIF3CO14782 793 aa11.64□□□□□ -0.55
CTDNEP1-203ENST00000570385 ZPR1O75312 459 aa11.64□□□□□ -0.55
CTDNEP1-203ENST00000570385 CYP19A1P11511 503 aaPredicted RBP11.64□□□□□ -0.55
CTDNEP1-203ENST00000570385 SOS1Q07889 1333 aaPredicted RBP11.63□□□□□ -0.55
CTDNEP1-203ENST00000570385 CANXP27824 592 aaKnown RBP11.63□□□□□ -0.55
CTDNEP1-203ENST00000570385 PIM2Q9P1W9 311 aa11.63□□□□□ -0.55
CTDNEP1-203ENST00000570385 ZBTB1Q9Y2K1 713 aa11.63□□□□□ -0.55
CTDNEP1-203ENST00000570385 POLRMTO00411 1230 aaKnown RBP11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 HSPA6P17066 643 aa11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 TM4SF1P30408 202 aa11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 NFIXQ14938 502 aa11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 DALRD3Q5D0E6 543 aaKnown RBP11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 C9orf131Q5VYM1 1079 aa11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 NMRK2Q9NPI5 230 aa11.62□□□□□ -0.55
CTDNEP1-203ENST00000570385 BICDL1Q6ZP65 573 aa11.61□□□□□ -0.55
CTDNEP1-203ENST00000570385 IL17REQ8NFR9 667 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms