RNA–Protein interactions for RNA: ENST00000570253.5

PKD1-240, Transcript of polycystin 1, transient receptor potential channel interacting, human

TSL 5

Gene PKD1, Length 603 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKD1-240	ENST00000570253	GPBP1L1	Q9HC44	474 aa	Predicted RBP	28.9	■■■□□ 2.22
PKD1-240	ENST00000570253	ERVV-2	B6SEH9	535 aa		28.89	■■■□□ 2.22
PKD1-240	ENST00000570253	AMIGO3	Q86WK7	504 aa		28.89	■■■□□ 2.22
PKD1-240	ENST00000570253	ATG3	Q9NT62	314 aa		28.89	■■■□□ 2.22
PKD1-240	ENST00000570253	RTCB	Q9Y3I0	505 aa	Known RBP	28.89	■■■□□ 2.22
PKD1-240	ENST00000570253	ITPK1	Q13572	414 aa		28.88	■■■□□ 2.21
PKD1-240	ENST00000570253	DCAF5	Q96JK2	942 aa		28.88	■■■□□ 2.21
PKD1-240	ENST00000570253	SMIM5	Q71RC9	77 aa		28.87	■■■□□ 2.21
PKD1-240	ENST00000570253	RBM42	Q9BTD8	480 aa	Known RBP	28.87	■■■□□ 2.21
PKD1-240	ENST00000570253	AMOT	Q4VCS5	1084 aa		28.86	■■■□□ 2.21
PKD1-240	ENST00000570253	TRAPPC3L	Q5T215	181 aa		28.86	■■■□□ 2.21
PKD1-240	ENST00000570253	PANK3	Q9H999	370 aa		28.85	■■■□□ 2.21
PKD1-240	ENST00000570253	MMP10	P09238	476 aa		28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	CABP4	P57796	275 aa		28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	C1orf141	Q5JVX7	400 aa		28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	MORC1	Q86VD1	984 aa		28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	NLGN1	Q8N2Q7	840 aa		28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	WWC3	Q9ULE0	1092 aa		28.83	■■■□□ 2.21
PKD1-240	ENST00000570253	ADRA2B	P18089	450 aa		28.82	■■■□□ 2.2
PKD1-240	ENST00000570253	ZNF831	Q5JPB2	1677 aa		28.81	■■■□□ 2.2
PKD1-240	ENST00000570253	HSPA5	P11021	654 aa	Known RBP	28.81	■■■□□ 2.2
PKD1-240	ENST00000570253	KDR	P35968	1356 aa		28.8	■■■□□ 2.2
PKD1-240	ENST00000570253	RFC4	P35249	363 aa		28.79	■■■□□ 2.2
PKD1-240	ENST00000570253	RC3H1	Q5TC82	1133 aa	Known RBP	28.79	■■■□□ 2.2
PKD1-240	ENST00000570253	ZNF526	Q8TF50	670 aa	Predicted RBP	28.79	■■■□□ 2.2
PKD1-240	ENST00000570253	ADCY9	O60503	1353 aa		28.78	■■■□□ 2.2
PKD1-240	ENST00000570253	MTHFS	P49914	203 aa		28.78	■■■□□ 2.2
PKD1-240	ENST00000570253	CNTNAP4	Q9C0A0	1308 aa		28.77	■■■□□ 2.2
PKD1-240	ENST00000570253	TGFB2	P61812	414 aa		28.77	■■■□□ 2.2
PKD1-240	ENST00000570253	CCDC87	Q9NVE4	849 aa		28.77	■■■□□ 2.2
PKD1-240	ENST00000570253	KNSTRN	Q9Y448	316 aa		28.77	■■■□□ 2.2
PKD1-240	ENST00000570253	PARP3	Q9Y6F1	533 aa		28.75	■■■□□ 2.19
PKD1-240	ENST00000570253	CIC	Q96RK0	1608 aa	Predicted RBP	28.75	■■■□□ 2.19
PKD1-240	ENST00000570253	RPS6KA4	O75676	772 aa		28.74	■■■□□ 2.19
PKD1-240	ENST00000570253	ARHGEF1	Q92888	912 aa	Known RBP	28.74	■■■□□ 2.19
PKD1-240	ENST00000570253	COL5A3	P25940	1745 aa	Predicted RBP	28.74	■■■□□ 2.19
PKD1-240	ENST00000570253	KDM6A	O15550	1401 aa	Predicted RBP	28.72	■■■□□ 2.19
PKD1-240	ENST00000570253	KIF13B	Q9NQT8	1826 aa		28.72	■■■□□ 2.19
PKD1-240	ENST00000570253	BCS1L	Q9Y276	419 aa		28.72	■■■□□ 2.19
PKD1-240	ENST00000570253	SULT6B1	Q6IMI4	303 aa		28.71	■■■□□ 2.19
PKD1-240	ENST00000570253	SLC4A9	Q96Q91	983 aa		28.71	■■■□□ 2.19
PKD1-240	ENST00000570253	PXDNL	A1KZ92	1463 aa		28.71	■■■□□ 2.19
PKD1-240	ENST00000570253	PTCD1	O75127	700 aa	Known RBP	28.7	■■■□□ 2.18
PKD1-240	ENST00000570253	C10orf71	Q711Q0	1435 aa		28.69	■■■□□ 2.18
PKD1-240	ENST00000570253	CCER1	Q8TC90	406 aa	Predicted RBP	28.69	■■■□□ 2.18
PKD1-240	ENST00000570253	C4A	P0C0L4	1744 aa		28.69	■■■□□ 2.18
PKD1-240	ENST00000570253	GYS1	P13807	737 aa		28.68	■■■□□ 2.18
PKD1-240	ENST00000570253	AEBP1	Q8IUX7	1158 aa		28.68	■■■□□ 2.18
PKD1-240	ENST00000570253	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.67	■■■□□ 2.18
PKD1-240	ENST00000570253	NFATC2IP	Q8NCF5	419 aa		28.67	■■■□□ 2.18
PKD1-240	ENST00000570253		A0A0G2JLW4	131 aa		28.66	■■■□□ 2.18
PKD1-240	ENST00000570253	HSPA6	P17066	643 aa		28.66	■■■□□ 2.18
PKD1-240	ENST00000570253	FCHSD2	O94868	740 aa		28.65	■■■□□ 2.18
PKD1-240	ENST00000570253	CRKL	P46109	303 aa	Known RBP	28.65	■■■□□ 2.18
PKD1-240	ENST00000570253	ARHGAP27	Q6ZUM4	889 aa		28.64	■■■□□ 2.18
PKD1-240	ENST00000570253	AKAP4	Q5JQC9	854 aa		28.63	■■■□□ 2.17
PKD1-240	ENST00000570253	DPEP1	P16444	411 aa		28.62	■■■□□ 2.17
PKD1-240	ENST00000570253	KIAA1551	Q9HCM1	1747 aa		28.62	■■■□□ 2.17
PKD1-240	ENST00000570253	MYH14	Q7Z406	1995 aa	Known RBP	28.62	■■■□□ 2.17
PKD1-240	ENST00000570253	SCN11A	Q9UI33	1791 aa		28.61	■■■□□ 2.17
PKD1-240	ENST00000570253	IL13	P35225	146 aa		28.61	■■■□□ 2.17
PKD1-240	ENST00000570253	CEP350	Q5VT06	3117 aa		28.59	■■■□□ 2.17
PKD1-240	ENST00000570253	ZPR1	O75312	459 aa		28.58	■■■□□ 2.17
PKD1-240	ENST00000570253	PIM2	Q9P1W9	311 aa		28.58	■■■□□ 2.17
PKD1-240	ENST00000570253	USP42	Q9H9J4	1324 aa	Known RBP	28.58	■■■□□ 2.17
PKD1-240	ENST00000570253	SLC52A2	Q9HAB3	445 aa		28.57	■■■□□ 2.16
PKD1-240	ENST00000570253	TJP1	Q07157	1748 aa		28.57	■■■□□ 2.16
PKD1-240	ENST00000570253	KIF3C	O14782	793 aa		28.56	■■■□□ 2.16
PKD1-240	ENST00000570253	SRP68	Q9UHB9	627 aa	Known RBP	28.56	■■■□□ 2.16
PKD1-240	ENST00000570253	DALRD3	Q5D0E6	543 aa	Known RBP	28.54	■■■□□ 2.16
PKD1-240	ENST00000570253	BRCA1	P38398	1863 aa	Known RBP	28.54	■■■□□ 2.16
PKD1-240	ENST00000570253	ARFGEF1	Q9Y6D6	1849 aa		28.53	■■■□□ 2.16
PKD1-240	ENST00000570253	FKBP8	Q14318	412 aa		28.53	■■■□□ 2.16
PKD1-240	ENST00000570253	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.53	■■■□□ 2.16
PKD1-240	ENST00000570253	TOMM70	O94826	608 aa		28.52	■■■□□ 2.16
PKD1-240	ENST00000570253	HMOX1	P09601	288 aa		28.51	■■■□□ 2.15
PKD1-240	ENST00000570253	DNAJC10	Q8IXB1	793 aa		28.51	■■■□□ 2.15
PKD1-240	ENST00000570253	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.51	■■■□□ 2.15
PKD1-240	ENST00000570253	RNMT	O43148	476 aa	Known RBP	28.5	■■■□□ 2.15
PKD1-240	ENST00000570253	INTS5	Q6P9B9	1019 aa	Known RBP	28.5	■■■□□ 2.15
PKD1-240	ENST00000570253	DIAPH1	O60610	1272 aa	Known RBP	28.49	■■■□□ 2.15
PKD1-240	ENST00000570253	APLP1	P51693	650 aa		28.49	■■■□□ 2.15
PKD1-240	ENST00000570253	C9orf131	Q5VYM1	1079 aa		28.49	■■■□□ 2.15
PKD1-240	ENST00000570253	KIF7	Q2M1P5	1343 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	MRC1	P22897	1456 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	KCNA3	P22001	575 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	DDR1	Q08345	913 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	IFFO2	Q5TF58	517 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	USPL1	Q5W0Q7	1092 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	LGR6	Q9HBX8	967 aa		28.48	■■■□□ 2.15
PKD1-240	ENST00000570253	VIRMA	Q69YN4	1812 aa	Known RBP	28.47	■■■□□ 2.15
PKD1-240	ENST00000570253	SOS1	Q07889	1333 aa	Predicted RBP	28.46	■■■□□ 2.15
PKD1-240	ENST00000570253	POLRMT	O00411	1230 aa	Known RBP	28.46	■■■□□ 2.15
PKD1-240	ENST00000570253	TTC5	Q8N0Z6	440 aa		28.46	■■■□□ 2.15
PKD1-240	ENST00000570253	KDM2B	Q8NHM5	1336 aa		28.45	■■■□□ 2.15
PKD1-240	ENST00000570253	CYP19A1	P11511	503 aa	Predicted RBP	28.45	■■■□□ 2.14
PKD1-240	ENST00000570253	SLC39A6	Q13433	755 aa		28.45	■■■□□ 2.14
PKD1-240	ENST00000570253	COL15A1	P39059	1388 aa		28.45	■■■□□ 2.14
PKD1-240	ENST00000570253	TM4SF1	P30408	202 aa		28.44	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms