RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 PHKG2P15735 406 aa16.73■□□□□ 0.27
CAPN3-220ENST00000569827 ATP6V1AP38606 617 aa16.73■□□□□ 0.27
CAPN3-220ENST00000569827 ADCY9O60503 1353 aa16.73■□□□□ 0.27
CAPN3-220ENST00000569827 EIF4A2Q14240 407 aaKnown RBP16.72■□□□□ 0.27
CAPN3-220ENST00000569827 GPBP1L1Q9HC44 474 aaPredicted RBP16.72■□□□□ 0.27
CAPN3-220ENST00000569827 SSFA2P28290 1259 aa16.71■□□□□ 0.27
CAPN3-220ENST00000569827 ATG3Q9NT62 314 aa16.71■□□□□ 0.27
CAPN3-220ENST00000569827 KDRP35968 1356 aa16.7■□□□□ 0.26
CAPN3-220ENST00000569827 TRIM26Q12899 539 aaPredicted RBP16.7■□□□□ 0.26
CAPN3-220ENST00000569827 IFNL2Q8IZJ0 200 aa16.7■□□□□ 0.26
CAPN3-220ENST00000569827 SLC4A9Q96Q91 983 aa16.7■□□□□ 0.26
CAPN3-220ENST00000569827 TJP1Q07157 1748 aa16.7■□□□□ 0.26
CAPN3-220ENST00000569827 SCN11AQ9UI33 1791 aa16.69■□□□□ 0.26
CAPN3-220ENST00000569827 ZNF831Q5JPB2 1677 aa16.69■□□□□ 0.26
CAPN3-220ENST00000569827 PXDNLA1KZ92 1463 aa16.69■□□□□ 0.26
CAPN3-220ENST00000569827 MMP10P09238 476 aa16.68■□□□□ 0.26
CAPN3-220ENST00000569827 RBM42Q9BTD8 480 aaKnown RBP16.68■□□□□ 0.26
CAPN3-220ENST00000569827 KDM6AO15550 1401 aaPredicted RBP16.68■□□□□ 0.26
CAPN3-220ENST00000569827 ARFGEF1Q9Y6D6 1849 aa16.67■□□□□ 0.26
CAPN3-220ENST00000569827 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.66■□□□□ 0.26
CAPN3-220ENST00000569827 AEBP1Q8IUX7 1158 aa16.65■□□□□ 0.26
CAPN3-220ENST00000569827 PCGF6Q9BYE7 350 aa16.65■□□□□ 0.26
CAPN3-220ENST00000569827 A0A0G2JLW4 131 aa16.64■□□□□ 0.25
CAPN3-220ENST00000569827 C10orf71Q711Q0 1435 aa16.63■□□□□ 0.25
CAPN3-220ENST00000569827 SBF1O95248 1867 aa16.63■□□□□ 0.25
CAPN3-220ENST00000569827 ZNF530Q6P9A1 599 aaPredicted RBP16.63■□□□□ 0.25
CAPN3-220ENST00000569827 PANK3Q9H999 370 aa16.63■□□□□ 0.25
CAPN3-220ENST00000569827 BCS1LQ9Y276 419 aa16.63■□□□□ 0.25
CAPN3-220ENST00000569827 RTCBQ9Y3I0 505 aaKnown RBP16.63■□□□□ 0.25
CAPN3-220ENST00000569827 AFDNP55196 1824 aaKnown RBP16.63■□□□□ 0.25
CAPN3-220ENST00000569827 CCDC88AQ3V6T2 1871 aa16.63■□□□□ 0.25
CAPN3-220ENST00000569827 HMGB2P26583 209 aaKnown RBP16.62■□□□□ 0.25
CAPN3-220ENST00000569827 TRAPPC3LQ5T215 181 aa16.62■□□□□ 0.25
CAPN3-220ENST00000569827 ARHGEF1Q92888 912 aaKnown RBP16.62■□□□□ 0.25
CAPN3-220ENST00000569827 ADAMTS7Q9UKP4 1686 aa16.62■□□□□ 0.25
CAPN3-220ENST00000569827 PTCD1O75127 700 aaKnown RBP16.61■□□□□ 0.25
CAPN3-220ENST00000569827 HSPA5P11021 654 aaKnown RBP16.61■□□□□ 0.25
CAPN3-220ENST00000569827 KIF3CO14782 793 aa16.6■□□□□ 0.25
CAPN3-220ENST00000569827 GYS1P13807 737 aa16.6■□□□□ 0.25
CAPN3-220ENST00000569827 DPEP1P16444 411 aa16.6■□□□□ 0.25
CAPN3-220ENST00000569827 HSPA6P17066 643 aa16.6■□□□□ 0.25
CAPN3-220ENST00000569827 CABP4P57796 275 aa16.6■□□□□ 0.25
CAPN3-220ENST00000569827 SRP68Q9UHB9 627 aaKnown RBP16.6■□□□□ 0.25
CAPN3-220ENST00000569827 ERVV-2B6SEH9 535 aa16.59■□□□□ 0.25
CAPN3-220ENST00000569827 PLEKHO1Q53GL0 409 aaPredicted RBP16.59■□□□□ 0.25
CAPN3-220ENST00000569827 DCAF5Q96JK2 942 aa16.59■□□□□ 0.25
CAPN3-220ENST00000569827 RFC4P35249 363 aa16.58■□□□□ 0.24
CAPN3-220ENST00000569827 CNTNAP4Q9C0A0 1308 aa16.58■□□□□ 0.24
CAPN3-220ENST00000569827 RPS6KA4O75676 772 aa16.57■□□□□ 0.24
CAPN3-220ENST00000569827 FCHSD2O94868 740 aa16.57■□□□□ 0.24
CAPN3-220ENST00000569827 MTHFSP49914 203 aa16.57■□□□□ 0.24
CAPN3-220ENST00000569827 ARHGAP27Q6ZUM4 889 aa16.57■□□□□ 0.24
CAPN3-220ENST00000569827 CCDC87Q9NVE4 849 aa16.57■□□□□ 0.24
CAPN3-220ENST00000569827 WDR90Q96KV7 1748 aa16.56■□□□□ 0.24
CAPN3-220ENST00000569827 HSP90AB1P08238 724 aaKnown RBP16.56■□□□□ 0.24
CAPN3-220ENST00000569827 CRKLP46109 303 aaKnown RBP16.56■□□□□ 0.24
CAPN3-220ENST00000569827 SULT6B1Q6IMI4 303 aa16.56■□□□□ 0.24
CAPN3-220ENST00000569827 MORC1Q86VD1 984 aa16.56■□□□□ 0.24
CAPN3-220ENST00000569827 NLGN1Q8N2Q7 840 aa16.56■□□□□ 0.24
CAPN3-220ENST00000569827 NFATC2IPQ8NCF5 419 aa16.56■□□□□ 0.24
CAPN3-220ENST00000569827 PARP3Q9Y6F1 533 aa16.56■□□□□ 0.24
CAPN3-220ENST00000569827 CACNA1SQ13698 1873 aa16.55■□□□□ 0.24
CAPN3-220ENST00000569827 EIF4G2P78344 907 aaKnown RBP eCLIP16.55■□□□□ 0.24
CAPN3-220ENST00000569827 FKBP8Q14318 412 aa16.55■□□□□ 0.24
CAPN3-220ENST00000569827 C1orf141Q5JVX7 400 aa16.55■□□□□ 0.24
CAPN3-220ENST00000569827 RC3H1Q5TC82 1133 aaKnown RBP16.55■□□□□ 0.24
CAPN3-220ENST00000569827 IFFO2Q5TF58 517 aa16.55■□□□□ 0.24
CAPN3-220ENST00000569827 NMRK2Q9NPI5 230 aa16.55■□□□□ 0.24
CAPN3-220ENST00000569827 TGFB2P61812 414 aa16.54■□□□□ 0.24
CAPN3-220ENST00000569827 DDR1Q08345 913 aa16.54■□□□□ 0.24
CAPN3-220ENST00000569827 DLEC1Q9Y238 1755 aa16.54■□□□□ 0.24
CAPN3-220ENST00000569827 PLEKHG2Q9H7P9 1386 aa16.53■□□□□ 0.24
CAPN3-220ENST00000569827 ADRA2BP18089 450 aa16.53■□□□□ 0.24
CAPN3-220ENST00000569827 KCNA3P22001 575 aa16.53■□□□□ 0.24
CAPN3-220ENST00000569827 AMOTQ4VCS5 1084 aa16.53■□□□□ 0.24
CAPN3-220ENST00000569827 TIMELESSQ9UNS1 1208 aa16.53■□□□□ 0.24
CAPN3-220ENST00000569827 UBR2Q8IWV8 1755 aa16.52■□□□□ 0.24
CAPN3-220ENST00000569827 KCPQ6ZWJ8 1503 aa16.52■□□□□ 0.24
CAPN3-220ENST00000569827 CHRNA5P30532 468 aa16.52■□□□□ 0.24
CAPN3-220ENST00000569827 USP42Q9H9J4 1324 aaKnown RBP16.51■□□□□ 0.23
CAPN3-220ENST00000569827 IL13P35225 146 aa16.51■□□□□ 0.23
CAPN3-220ENST00000569827 C9orf131Q5VYM1 1079 aa16.51■□□□□ 0.23
CAPN3-220ENST00000569827 DNAJC10Q8IXB1 793 aa16.51■□□□□ 0.23
CAPN3-220ENST00000569827 TIAM2Q8IVF5 1701 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 NRXN2Q9P2S2 1712 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 TNRC6CQ9HCJ0 1690 aaKnown RBP16.5■□□□□ 0.23
CAPN3-220ENST00000569827 PCNTO95613 3336 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 HMOX1P09601 288 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 SLC39A6Q13433 755 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 INTS5Q6P9B9 1019 aaKnown RBP16.5■□□□□ 0.23
CAPN3-220ENST00000569827 LGR6Q9HBX8 967 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 ANKRD31Q8N7Z5 1873 aa16.5■□□□□ 0.23
CAPN3-220ENST00000569827 HTRA3P83110 453 aa16.49■□□□□ 0.23
CAPN3-220ENST00000569827 MRC1P22897 1456 aa16.48■□□□□ 0.23
CAPN3-220ENST00000569827 PIM2Q9P1W9 311 aa16.48■□□□□ 0.23
CAPN3-220ENST00000569827 SIPA1L3O60292 1781 aaPredicted RBP16.48■□□□□ 0.23
CAPN3-220ENST00000569827 CLSPNQ9HAW4 1339 aa16.47■□□□□ 0.23
CAPN3-220ENST00000569827 POLRMTO00411 1230 aaKnown RBP16.47■□□□□ 0.23
CAPN3-220ENST00000569827 CNGB1Q14028 1251 aaPredicted RBP16.47■□□□□ 0.23
CAPN3-220ENST00000569827 USPL1Q5W0Q7 1092 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms