RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 ITGB4P16144 1822 aa19.35■□□□□ 0.69
COMMD4-225ENST00000569245 U2AF1L5P0DN76 240 aaPredicted RBP19.34■□□□□ 0.69
COMMD4-225ENST00000569245 U2AF1Q01081 240 aaKnown RBP eCLIP19.34■□□□□ 0.69
COMMD4-225ENST00000569245 COL23A1Q86Y22 540 aaPredicted RBP19.33■□□□□ 0.68
COMMD4-225ENST00000569245 LGR6Q9HBX8 967 aa19.33■□□□□ 0.68
COMMD4-225ENST00000569245 POLD1P28340 1107 aa19.32■□□□□ 0.68
COMMD4-225ENST00000569245 ITPK1Q13572 414 aa19.32■□□□□ 0.68
COMMD4-225ENST00000569245 LINC00116Q8NCU8 138 aa19.32■□□□□ 0.68
COMMD4-225ENST00000569245 FLAD1Q8NFF5 587 aa19.32■□□□□ 0.68
COMMD4-225ENST00000569245 RNMTO43148 476 aaKnown RBP19.31■□□□□ 0.68
COMMD4-225ENST00000569245 ANP32CO43423 234 aa19.31■□□□□ 0.68
COMMD4-225ENST00000569245 PTCD1O75127 700 aaKnown RBP19.31■□□□□ 0.68
COMMD4-225ENST00000569245 PHF14O94880 888 aa19.31■□□□□ 0.68
COMMD4-225ENST00000569245 PRKAR2BP31323 418 aa19.31■□□□□ 0.68
COMMD4-225ENST00000569245 GAS2L2Q8NHY3 880 aa19.31■□□□□ 0.68
COMMD4-225ENST00000569245 ARXQ96QS3 562 aa19.31■□□□□ 0.68
COMMD4-225ENST00000569245 SLC52A2Q9HAB3 445 aa19.3■□□□□ 0.68
COMMD4-225ENST00000569245 SGIP1Q9BQI5 828 aa19.29■□□□□ 0.68
COMMD4-225ENST00000569245 RSPH6AQ9H0K4 717 aa19.29■□□□□ 0.68
COMMD4-225ENST00000569245 DCAF8L1A6NGE4 600 aa19.28■□□□□ 0.68
COMMD4-225ENST00000569245 GNAT3A8MTJ3 354 aa19.28■□□□□ 0.68
COMMD4-225ENST00000569245 GNPATO15228 680 aa19.28■□□□□ 0.68
COMMD4-225ENST00000569245 SMIM5Q71RC9 77 aa19.28■□□□□ 0.68
COMMD4-225ENST00000569245 PHACTR3Q96KR7 559 aa19.28■□□□□ 0.68
COMMD4-225ENST00000569245 FHDC1Q9C0D6 1143 aaPredicted RBP19.28■□□□□ 0.68
COMMD4-225ENST00000569245 C5P01031 1676 aa19.27■□□□□ 0.68
COMMD4-225ENST00000569245 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.27■□□□□ 0.68
COMMD4-225ENST00000569245 RALBP1Q15311 655 aa19.27■□□□□ 0.68
COMMD4-225ENST00000569245 MSL1Q68DK7 614 aa19.27■□□□□ 0.68
COMMD4-225ENST00000569245 MIER1Q8N108 512 aa19.27■□□□□ 0.68
COMMD4-225ENST00000569245 KLHL34Q8N239 644 aa19.27■□□□□ 0.68
COMMD4-225ENST00000569245 SLC4A9Q96Q91 983 aa19.27■□□□□ 0.68
COMMD4-225ENST00000569245 FCHSD2O94868 740 aa19.26■□□□□ 0.67
COMMD4-225ENST00000569245 AMIGO3Q86WK7 504 aa19.26■□□□□ 0.67
COMMD4-225ENST00000569245 PRKRIP1Q9H875 184 aaPredicted RBP19.26■□□□□ 0.67
COMMD4-225ENST00000569245 C4BP0C0L5 1744 aa19.25■□□□□ 0.67
COMMD4-225ENST00000569245 MAP3K5Q99683 1374 aa19.25■□□□□ 0.67
COMMD4-225ENST00000569245 SSFA2P28290 1259 aa19.25■□□□□ 0.67
COMMD4-225ENST00000569245 NEFMP07197 916 aa19.24■□□□□ 0.67
COMMD4-225ENST00000569245 TEFQ10587 303 aa19.24■□□□□ 0.67
COMMD4-225ENST00000569245 SLC39A6Q13433 755 aa19.24■□□□□ 0.67
COMMD4-225ENST00000569245 SYT17Q9BSW7 474 aa19.24■□□□□ 0.67
COMMD4-225ENST00000569245 RTCBQ9Y3I0 505 aaKnown RBP19.24■□□□□ 0.67
COMMD4-225ENST00000569245 TRAPPC3LQ5T215 181 aa19.22■□□□□ 0.67
COMMD4-225ENST00000569245 IL17REQ8NFR9 667 aa19.22■□□□□ 0.67
COMMD4-225ENST00000569245 RTF1Q92541 710 aaKnown RBP19.22■□□□□ 0.67
COMMD4-225ENST00000569245 QSER1Q2KHR3 1735 aa19.22■□□□□ 0.67
COMMD4-225ENST00000569245 RC3H1Q5TC82 1133 aaKnown RBP19.21■□□□□ 0.67
COMMD4-225ENST00000569245 TTC5Q8N0Z6 440 aa19.21■□□□□ 0.67
COMMD4-225ENST00000569245 TAF1LQ8IZX4 1826 aa19.21■□□□□ 0.67
COMMD4-225ENST00000569245 TUBGCP6Q96RT7 1819 aa19.21■□□□□ 0.67
COMMD4-225ENST00000569245 CNTNAP4Q9C0A0 1308 aa19.2■□□□□ 0.66
COMMD4-225ENST00000569245 SCN11AQ9UI33 1791 aa19.19■□□□□ 0.66
COMMD4-225ENST00000569245 CRKLP46109 303 aaKnown RBP19.19■□□□□ 0.66
COMMD4-225ENST00000569245 MRC1P22897 1456 aa19.18■□□□□ 0.66
COMMD4-225ENST00000569245 RPS6KA4O75676 772 aa19.18■□□□□ 0.66
COMMD4-225ENST00000569245 RFC4P35249 363 aa19.18■□□□□ 0.66
COMMD4-225ENST00000569245 DNAJC10Q8IXB1 793 aa19.18■□□□□ 0.66
COMMD4-225ENST00000569245 PNNQ9H307 717 aaKnown RBP19.18■□□□□ 0.66
COMMD4-225ENST00000569245 CCER2I3L3R5 266 aa19.17■□□□□ 0.66
COMMD4-225ENST00000569245 ADRA2BP18089 450 aa19.17■□□□□ 0.66
COMMD4-225ENST00000569245 ARHGEF1Q92888 912 aaKnown RBP19.17■□□□□ 0.66
COMMD4-225ENST00000569245 MYBBP1AQ9BQG0 1328 aaKnown RBP19.17■□□□□ 0.66
COMMD4-225ENST00000569245 BTBD11A6QL63 1104 aa19.16■□□□□ 0.66
COMMD4-225ENST00000569245 MCM10Q7L590 875 aa19.16■□□□□ 0.66
COMMD4-225ENST00000569245 ZNF790Q6PG37 636 aa19.15■□□□□ 0.66
COMMD4-225ENST00000569245 VSIG10Q8N0Z9 540 aa19.15■□□□□ 0.66
COMMD4-225ENST00000569245 CCDC87Q9NVE4 849 aa19.15■□□□□ 0.66
COMMD4-225ENST00000569245 MAPK8IP3Q9UPT6 1336 aa19.15■□□□□ 0.66
COMMD4-225ENST00000569245 DCTN1Q14203 1278 aa19.14■□□□□ 0.65
COMMD4-225ENST00000569245 INTS5Q6P9B9 1019 aaKnown RBP19.14■□□□□ 0.65
COMMD4-225ENST00000569245 HTATSF1O43719 755 aaKnown RBP19.13■□□□□ 0.65
COMMD4-225ENST00000569245 CYP19A1P11511 503 aaPredicted RBP19.13■□□□□ 0.65
COMMD4-225ENST00000569245 PELP1Q8IZL8 1130 aaKnown RBP19.13■□□□□ 0.65
COMMD4-225ENST00000569245 NLGN1Q8N2Q7 840 aa19.13■□□□□ 0.65
COMMD4-225ENST00000569245 ZNF496Q96IT1 587 aaPredicted RBP19.13■□□□□ 0.65
COMMD4-225ENST00000569245 CEMIPQ8WUJ3 1361 aa19.13■□□□□ 0.65
COMMD4-225ENST00000569245 ZNF831Q5JPB2 1677 aa19.13■□□□□ 0.65
COMMD4-225ENST00000569245 UBR3Q6ZT12 1888 aa19.13■□□□□ 0.65
COMMD4-225ENST00000569245 STARD3NLO95772 234 aa19.12■□□□□ 0.65
COMMD4-225ENST00000569245 GPR162Q16538 588 aa19.12■□□□□ 0.65
COMMD4-225ENST00000569245 NLGN2Q8NFZ4 835 aa19.12■□□□□ 0.65
COMMD4-225ENST00000569245 FMNL2Q96PY5 1086 aa19.12■□□□□ 0.65
COMMD4-225ENST00000569245 PLEKHF1Q96S99 279 aa19.12■□□□□ 0.65
COMMD4-225ENST00000569245 ADAMTS7Q9UKP4 1686 aa19.11■□□□□ 0.65
COMMD4-225ENST00000569245 MMP10P09238 476 aa19.11■□□□□ 0.65
COMMD4-225ENST00000569245 KCPQ6ZWJ8 1503 aa19.1■□□□□ 0.65
COMMD4-225ENST00000569245 WDR43Q15061 677 aaKnown RBP eCLIP19.1■□□□□ 0.65
COMMD4-225ENST00000569245 NFE2L2Q16236 605 aa19.1■□□□□ 0.65
COMMD4-225ENST00000569245 TEX13AQ9BXU3 409 aaPredicted RBP19.1■□□□□ 0.65
COMMD4-225ENST00000569245 CD2APQ9Y5K6 639 aa19.1■□□□□ 0.65
COMMD4-225ENST00000569245 KCNQ3O43525 872 aa19.09■□□□□ 0.65
COMMD4-225ENST00000569245 ZPR1O75312 459 aa19.09■□□□□ 0.65
COMMD4-225ENST00000569245 GYS1P13807 737 aa19.09■□□□□ 0.65
COMMD4-225ENST00000569245 CANXP27824 592 aaKnown RBP19.09■□□□□ 0.65
COMMD4-225ENST00000569245 SRP68Q9UHB9 627 aaKnown RBP19.09■□□□□ 0.65
COMMD4-225ENST00000569245 HEG1Q9ULI3 1381 aa19.08■□□□□ 0.65
COMMD4-225ENST00000569245 TAF7Q15545 349 aaPredicted RBP19.08■□□□□ 0.64
COMMD4-225ENST00000569245 ZBTB1Q9Y2K1 713 aa19.08■□□□□ 0.64
COMMD4-225ENST00000569245 COL5A3P25940 1745 aaPredicted RBP19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms