RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 SIPA1L3O60292 1781 aaPredicted RBP13.76□□□□□ -0.21
CDH3-210ENST00000569117 DOT1LQ8TEK3 1739 aa13.76□□□□□ -0.21
CDH3-210ENST00000569117 MRC1P22897 1456 aa13.75□□□□□ -0.21
CDH3-210ENST00000569117 FAM98CQ17RN3 349 aaKnown RBP13.75□□□□□ -0.21
CDH3-210ENST00000569117 RGS17Q9UGC6 210 aaPredicted RBP13.75□□□□□ -0.21
CDH3-210ENST00000569117 ONECUT3O60422 494 aaPredicted RBP13.74□□□□□ -0.21
CDH3-210ENST00000569117 RBM6P78332 1123 aaKnown RBP13.74□□□□□ -0.21
CDH3-210ENST00000569117 HNRNPUQ00839 825 aaKnown RBP eCLIP13.74□□□□□ -0.21
CDH3-210ENST00000569117 ZNF530Q6P9A1 599 aaPredicted RBP13.74□□□□□ -0.21
CDH3-210ENST00000569117 ZCRB1Q8TBF4 217 aaKnown RBP13.74□□□□□ -0.21
CDH3-210ENST00000569117 KDM6AO15550 1401 aaPredicted RBP13.73□□□□□ -0.21
CDH3-210ENST00000569117 ZBED9Q6R2W3 1325 aa13.73□□□□□ -0.21
CDH3-210ENST00000569117 LMOD3Q0VAK6 560 aa13.73□□□□□ -0.21
CDH3-210ENST00000569117 CCDC27Q2M243 656 aa13.73□□□□□ -0.21
CDH3-210ENST00000569117 AKAP4Q5JQC9 854 aa13.73□□□□□ -0.21
CDH3-210ENST00000569117 RRP7AQ9Y3A4 280 aaKnown RBP13.73□□□□□ -0.21
CDH3-210ENST00000569117 RGS12O14924 1447 aa13.73□□□□□ -0.21
CDH3-210ENST00000569117 CYP27B1O15528 508 aa13.72□□□□□ -0.21
CDH3-210ENST00000569117 PHKG2P15735 406 aa13.72□□□□□ -0.21
CDH3-210ENST00000569117 RIPK4P57078 832 aa13.72□□□□□ -0.21
CDH3-210ENST00000569117 DDB1Q16531 1140 aa13.72□□□□□ -0.21
CDH3-210ENST00000569117 C1orf141Q5JVX7 400 aa13.72□□□□□ -0.21
CDH3-210ENST00000569117 CEMIPQ8WUJ3 1361 aa13.71□□□□□ -0.21
CDH3-210ENST00000569117 ZNF521Q96K83 1311 aa13.71□□□□□ -0.21
CDH3-210ENST00000569117 GNAT3A8MTJ3 354 aa13.71□□□□□ -0.21
CDH3-210ENST00000569117 HTATSF1O43719 755 aaKnown RBP13.71□□□□□ -0.21
CDH3-210ENST00000569117 IFNL2Q8IZJ0 200 aa13.71□□□□□ -0.21
CDH3-210ENST00000569117 TRIM35Q9UPQ4 493 aa13.71□□□□□ -0.21
CDH3-210ENST00000569117 PAPPAQ13219 1627 aa13.71□□□□□ -0.22
CDH3-210ENST00000569117 ITGB4P16144 1822 aa13.71□□□□□ -0.22
CDH3-210ENST00000569117 NHSQ6T4R5 1651 aa13.7□□□□□ -0.22
CDH3-210ENST00000569117 EXOC5O00471 708 aa13.7□□□□□ -0.22
CDH3-210ENST00000569117 HSP90AB1P08238 724 aaKnown RBP13.7□□□□□ -0.22
CDH3-210ENST00000569117 NEUROD2Q15784 382 aa13.7□□□□□ -0.22
CDH3-210ENST00000569117 POTEAQ6S8J7 498 aa13.7□□□□□ -0.22
CDH3-210ENST00000569117 BCL9O00512 1426 aa13.7□□□□□ -0.22
CDH3-210ENST00000569117 KDM3BQ7LBC6 1761 aa13.7□□□□□ -0.22
CDH3-210ENST00000569117 SBF2Q86WG5 1849 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 SENP3-EIF4A1A0A087X0R7 540 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 A0A0G2JS52 829 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 RXRBP28702 533 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 MYT1Q01538 1121 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 WWC1Q8IX03 1113 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 SEPT12Q8IYM1 358 aa13.69□□□□□ -0.22
CDH3-210ENST00000569117 YTHDC1Q96MU7 727 aaKnown RBP13.69□□□□□ -0.22
CDH3-210ENST00000569117 RTF1Q92541 710 aaKnown RBP13.68□□□□□ -0.22
CDH3-210ENST00000569117 FAM212AQ96EL1 285 aa13.68□□□□□ -0.22
CDH3-210ENST00000569117 DCAF5Q96JK2 942 aa13.68□□□□□ -0.22
CDH3-210ENST00000569117 UBR2Q8IWV8 1755 aa13.66□□□□□ -0.22
CDH3-210ENST00000569117 CHRM1P11229 460 aaPredicted RBP13.66□□□□□ -0.22
CDH3-210ENST00000569117 CALD1Q05682 793 aaKnown RBP13.66□□□□□ -0.22
CDH3-210ENST00000569117 MPRIPQ6WCQ1 1025 aa13.66□□□□□ -0.22
CDH3-210ENST00000569117 MCM10Q7L590 875 aa13.66□□□□□ -0.22
CDH3-210ENST00000569117 MARCH10Q8NA82 808 aaPredicted RBP13.66□□□□□ -0.22
CDH3-210ENST00000569117 IL17REQ8NFR9 667 aa13.66□□□□□ -0.22
CDH3-210ENST00000569117 DDX54Q8TDD1 881 aaKnown RBP13.66□□□□□ -0.22
CDH3-210ENST00000569117 SALL2Q9Y467 1007 aaPredicted RBP13.66□□□□□ -0.22
CDH3-210ENST00000569117 IL16Q14005 1332 aa13.65□□□□□ -0.22
CDH3-210ENST00000569117 RNMTO43148 476 aaKnown RBP13.65□□□□□ -0.22
CDH3-210ENST00000569117 PDE3BQ13370 1112 aa13.65□□□□□ -0.22
CDH3-210ENST00000569117 DCTN1Q14203 1278 aa13.65□□□□□ -0.22
CDH3-210ENST00000569117 WDR63Q8IWG1 891 aa13.65□□□□□ -0.22
CDH3-210ENST00000569117 THUMPD2Q9BTF0 503 aaKnown RBP13.65□□□□□ -0.22
CDH3-210ENST00000569117 SGIP1Q9BQI5 828 aa13.64□□□□□ -0.23
CDH3-210ENST00000569117 RYDENQ9NUL5 291 aaKnown RBP13.64□□□□□ -0.23
CDH3-210ENST00000569117 BTAF1O14981 1849 aa13.64□□□□□ -0.23
CDH3-210ENST00000569117 ERVV-2B6SEH9 535 aa13.63□□□□□ -0.23
CDH3-210ENST00000569117 LGR6Q9HBX8 967 aa13.63□□□□□ -0.23
CDH3-210ENST00000569117 STK24Q9Y6E0 443 aa13.63□□□□□ -0.23
CDH3-210ENST00000569117 CICQ96RK0 1608 aaPredicted RBP13.62□□□□□ -0.23
CDH3-210ENST00000569117 GOLGA2Q08379 1002 aa13.62□□□□□ -0.23
CDH3-210ENST00000569117 TEFQ10587 303 aa13.62□□□□□ -0.23
CDH3-210ENST00000569117 KRT27Q7Z3Y8 459 aa13.62□□□□□ -0.23
CDH3-210ENST00000569117 BCL11BQ9C0K0 894 aaPredicted RBP13.62□□□□□ -0.23
CDH3-210ENST00000569117 SLC52A2Q9HAB3 445 aa13.62□□□□□ -0.23
CDH3-210ENST00000569117 IFT57Q9NWB7 429 aa13.62□□□□□ -0.23
CDH3-210ENST00000569117 TNS1Q9HBL0 1735 aaKnown RBP13.61□□□□□ -0.23
CDH3-210ENST00000569117 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.61□□□□□ -0.23
CDH3-210ENST00000569117 ERICH6Q7L0X2 663 aa13.61□□□□□ -0.23
CDH3-210ENST00000569117 ZFP91Q96JP5 570 aaPredicted RBP13.61□□□□□ -0.23
CDH3-210ENST00000569117 E9PSI1 815 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 ZNF853P0CG23 659 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 GNAI1P63096 354 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 TMEM132AQ24JP5 1023 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 BABAM1Q9NWV8 329 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 LAMB4A4D0S4 1761 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 EP400Q96L91 3159 aa13.6□□□□□ -0.23
CDH3-210ENST00000569117 KCPQ6ZWJ8 1503 aa13.59□□□□□ -0.23
CDH3-210ENST00000569117 KAT6BQ8WYB5 2073 aa13.59□□□□□ -0.23
CDH3-210ENST00000569117 CABP4P57796 275 aa13.59□□□□□ -0.23
CDH3-210ENST00000569117 SLFN5Q08AF3 891 aa13.59□□□□□ -0.23
CDH3-210ENST00000569117 TAF7Q15545 349 aaPredicted RBP13.59□□□□□ -0.23
CDH3-210ENST00000569117 ZNF831Q5JPB2 1677 aa13.59□□□□□ -0.23
CDH3-210ENST00000569117 FANCIQ9NVI1 1328 aa13.59□□□□□ -0.23
CDH3-210ENST00000569117 RGPD3A6NKT7 1758 aaPredicted RBP13.58□□□□□ -0.23
CDH3-210ENST00000569117 RGPD4Q7Z3J3 1758 aa13.58□□□□□ -0.23
CDH3-210ENST00000569117 CHL1O00533 1208 aa13.58□□□□□ -0.24
CDH3-210ENST00000569117 MNX1P50219 401 aaPredicted RBP13.58□□□□□ -0.24
CDH3-210ENST00000569117 SPDYE1Q8NFV5 336 aaPredicted RBP13.58□□□□□ -0.24
CDH3-210ENST00000569117 CDCA7LQ96GN5 454 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms