RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	SCN11A	Q9UI33	1791 aa		13.87	□□□□□ -0.19
UBR1-207	ENST00000568782	ZEB1	P37275	1124 aa	Predicted RBP	13.87	□□□□□ -0.19
UBR1-207	ENST00000568782	NFATC2IP	Q8NCF5	419 aa		13.87	□□□□□ -0.19
UBR1-207	ENST00000568782	ATG3	Q9NT62	314 aa		13.87	□□□□□ -0.19
UBR1-207	ENST00000568782	PPP2R1A	P30153	589 aa		13.86	□□□□□ -0.19
UBR1-207	ENST00000568782	PTGER2	P43116	358 aa		13.86	□□□□□ -0.19
UBR1-207	ENST00000568782	KLHL34	Q8N239	644 aa		13.86	□□□□□ -0.19
UBR1-207	ENST00000568782	GAS2L2	Q8NHY3	880 aa		13.86	□□□□□ -0.19
UBR1-207	ENST00000568782	C4B	P0C0L5	1744 aa		13.86	□□□□□ -0.19
UBR1-207	ENST00000568782	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.85	□□□□□ -0.19
UBR1-207	ENST00000568782	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
UBR1-207	ENST00000568782	PHF14	O94880	888 aa		13.84	□□□□□ -0.19
UBR1-207	ENST00000568782	MTHFSD	Q2M296	383 aa	Known RBP	13.84	□□□□□ -0.19
UBR1-207	ENST00000568782	COL23A1	Q86Y22	540 aa	Predicted RBP	13.84	□□□□□ -0.19
UBR1-207	ENST00000568782	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.84	□□□□□ -0.19
UBR1-207	ENST00000568782	GNAT3	A8MTJ3	354 aa		13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	GNPAT	O15228	680 aa		13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	PTCD1	O75127	700 aa	Known RBP	13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	SSFA2	P28290	1259 aa		13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	TEF	Q10587	303 aa		13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	PNN	Q9H307	717 aa	Known RBP	13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	SLC52A2	Q9HAB3	445 aa		13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	RTCB	Q9Y3I0	505 aa	Known RBP	13.83	□□□□□ -0.2
UBR1-207	ENST00000568782	KDM6A	O15550	1401 aa	Predicted RBP	13.82	□□□□□ -0.2
UBR1-207	ENST00000568782	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.82	□□□□□ -0.2
UBR1-207	ENST00000568782	RNMT	O43148	476 aa	Known RBP	13.82	□□□□□ -0.2
UBR1-207	ENST00000568782	SYT17	Q9BSW7	474 aa		13.82	□□□□□ -0.2
UBR1-207	ENST00000568782	UBR3	Q6ZT12	1888 aa		13.82	□□□□□ -0.2
UBR1-207	ENST00000568782	ZNF831	Q5JPB2	1677 aa		13.82	□□□□□ -0.2
UBR1-207	ENST00000568782	FCHSD2	O94868	740 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	PRKAR2B	P31323	418 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	DDX10	Q13206	875 aa	Known RBP	13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	RALBP1	Q15311	655 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	TRAPPC3L	Q5T215	181 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	TTC5	Q8N0Z6	440 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	LINC00116	Q8NCU8	138 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	RTF1	Q92541	710 aa	Known RBP	13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	SGIP1	Q9BQI5	828 aa		13.81	□□□□□ -0.2
UBR1-207	ENST00000568782	COL3A1	P02461	1466 aa	Predicted RBP	13.8	□□□□□ -0.2
UBR1-207	ENST00000568782	ITPK1	Q13572	414 aa		13.8	□□□□□ -0.2
UBR1-207	ENST00000568782	RC3H1	Q5TC82	1133 aa	Known RBP	13.8	□□□□□ -0.2
UBR1-207	ENST00000568782	LGR6	Q9HBX8	967 aa		13.8	□□□□□ -0.2
UBR1-207	ENST00000568782	ADRA2B	P18089	450 aa		13.79	□□□□□ -0.2
UBR1-207	ENST00000568782	RFC4	P35249	363 aa		13.79	□□□□□ -0.2
UBR1-207	ENST00000568782	MSL1	Q68DK7	614 aa		13.79	□□□□□ -0.2
UBR1-207	ENST00000568782	MAP3K5	Q99683	1374 aa		13.79	□□□□□ -0.2
UBR1-207	ENST00000568782	COL24A1	Q17RW2	1714 aa		13.78	□□□□□ -0.2
UBR1-207	ENST00000568782	GPR162	Q16538	588 aa		13.77	□□□□□ -0.21
UBR1-207	ENST00000568782	NPM2	Q86SE8	214 aa	Known RBP	13.77	□□□□□ -0.21
UBR1-207	ENST00000568782	CNTNAP4	Q9C0A0	1308 aa		13.77	□□□□□ -0.21
UBR1-207	ENST00000568782	RSPH6A	Q9H0K4	717 aa		13.77	□□□□□ -0.21
UBR1-207	ENST00000568782	COL5A3	P25940	1745 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR1-207	ENST00000568782	RPS6KA4	O75676	772 aa		13.76	□□□□□ -0.21
UBR1-207	ENST00000568782	PELP1	Q8IZL8	1130 aa	Known RBP	13.76	□□□□□ -0.21
UBR1-207	ENST00000568782	NLGN1	Q8N2Q7	840 aa		13.76	□□□□□ -0.21
UBR1-207	ENST00000568782	MAPK8IP3	Q9UPT6	1336 aa		13.75	□□□□□ -0.21
UBR1-207	ENST00000568782	STARD3NL	O95772	234 aa		13.75	□□□□□ -0.21
UBR1-207	ENST00000568782	CRKL	P46109	303 aa	Known RBP	13.75	□□□□□ -0.21
UBR1-207	ENST00000568782	SLC39A6	Q13433	755 aa		13.75	□□□□□ -0.21
UBR1-207	ENST00000568782	VSIG10	Q8N0Z9	540 aa		13.75	□□□□□ -0.21
UBR1-207	ENST00000568782	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR1-207	ENST00000568782	ARHGEF1	Q92888	912 aa	Known RBP	13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	PHACTR3	Q96KR7	559 aa		13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	SLC4A9	Q96Q91	983 aa		13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	CD2AP	Q9Y5K6	639 aa		13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	MYH14	Q7Z406	1995 aa	Known RBP	13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	CHD4	Q14839	1912 aa		13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	MRC1	P22897	1456 aa		13.74	□□□□□ -0.21
UBR1-207	ENST00000568782	BTBD11	A6QL63	1104 aa		13.73	□□□□□ -0.21
UBR1-207	ENST00000568782	HTATSF1	O43719	755 aa	Known RBP	13.73	□□□□□ -0.21
UBR1-207	ENST00000568782	ZPR1	O75312	459 aa		13.73	□□□□□ -0.21
UBR1-207	ENST00000568782	YY1	P25490	414 aa		13.73	□□□□□ -0.21
UBR1-207	ENST00000568782	IL17RE	Q8NFR9	667 aa		13.73	□□□□□ -0.21
UBR1-207	ENST00000568782	CCDC87	Q9NVE4	849 aa		13.73	□□□□□ -0.21
UBR1-207	ENST00000568782	ADAMTS7	Q9UKP4	1686 aa		13.72	□□□□□ -0.21
UBR1-207	ENST00000568782	ZNF790	Q6PG37	636 aa		13.72	□□□□□ -0.21
UBR1-207	ENST00000568782	SMIM5	Q71RC9	77 aa		13.72	□□□□□ -0.21
UBR1-207	ENST00000568782	DNAJC10	Q8IXB1	793 aa		13.72	□□□□□ -0.21
UBR1-207	ENST00000568782	FMNL2	Q96PY5	1086 aa		13.72	□□□□□ -0.21
UBR1-207	ENST00000568782	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.71	□□□□□ -0.21
UBR1-207	ENST00000568782	PARP3	Q9Y6F1	533 aa		13.71	□□□□□ -0.21
UBR1-207	ENST00000568782	TJP1	Q07157	1748 aa		13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	GRIN3B	O60391	1043 aa		13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	MMP10	P09238	476 aa		13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	WDR43	Q15061	677 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	AMIGO3	Q86WK7	504 aa		13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	CIC	Q96RK0	1608 aa	Predicted RBP	13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	DLG5	Q8TDM6	1919 aa		13.7	□□□□□ -0.22
UBR1-207	ENST00000568782	SIPA1L3	O60292	1781 aa	Predicted RBP	13.69	□□□□□ -0.22
UBR1-207	ENST00000568782	UBR2	Q8IWV8	1755 aa		13.69	□□□□□ -0.22
UBR1-207	ENST00000568782		A0A087WZG4	1122 aa		13.69	□□□□□ -0.22
UBR1-207	ENST00000568782	CYP19A1	P11511	503 aa	Predicted RBP	13.69	□□□□□ -0.22
UBR1-207	ENST00000568782	MCM10	Q7L590	875 aa		13.69	□□□□□ -0.22
UBR1-207	ENST00000568782	CEMIP	Q8WUJ3	1361 aa		13.69	□□□□□ -0.22
UBR1-207	ENST00000568782	CANX	P27824	592 aa	Known RBP	13.68	□□□□□ -0.22
UBR1-207	ENST00000568782	TAF7	Q15545	349 aa	Predicted RBP	13.68	□□□□□ -0.22
UBR1-207	ENST00000568782	INTS5	Q6P9B9	1019 aa	Known RBP	13.68	□□□□□ -0.22
UBR1-207	ENST00000568782	NLGN2	Q8NFZ4	835 aa		13.68	□□□□□ -0.22
UBR1-207	ENST00000568782	PNISR	Q8TF01	805 aa	Known RBP	13.68	□□□□□ -0.22
UBR1-207	ENST00000568782	ZNF496	Q96IT1	587 aa	Predicted RBP	13.68	□□□□□ -0.22

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