RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 KIAA1551Q9HCM1 1747 aa13.95□□□□□ -0.18
VPS39-211ENST00000568755 SMIM5Q71RC9 77 aa13.95□□□□□ -0.18
VPS39-211ENST00000568755 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.94□□□□□ -0.18
VPS39-211ENST00000568755 C4AP0C0L4 1744 aa13.94□□□□□ -0.18
VPS39-211ENST00000568755 SSFA2P28290 1259 aa13.94□□□□□ -0.18
VPS39-211ENST00000568755 IFNL2Q8IZJ0 200 aa13.94□□□□□ -0.18
VPS39-211ENST00000568755 TMOD3Q9NYL9 352 aa13.94□□□□□ -0.18
VPS39-211ENST00000568755 ASAP1Q9ULH1 1129 aa13.94□□□□□ -0.18
VPS39-211ENST00000568755 KDRP35968 1356 aa13.94□□□□□ -0.18
VPS39-211ENST00000568755 IGSF1Q8N6C5 1336 aa13.93□□□□□ -0.18
VPS39-211ENST00000568755 BRCA1P38398 1863 aaKnown RBP13.93□□□□□ -0.18
VPS39-211ENST00000568755 PHF14O94880 888 aa13.93□□□□□ -0.18
VPS39-211ENST00000568755 ITPK1Q13572 414 aa13.93□□□□□ -0.18
VPS39-211ENST00000568755 N4BP2Q86UW6 1770 aaPredicted RBP13.93□□□□□ -0.18
VPS39-211ENST00000568755 SCN11AQ9UI33 1791 aa13.93□□□□□ -0.18
VPS39-211ENST00000568755 SENP3-EIF4A1A0A087X0R7 540 aa13.92□□□□□ -0.18
VPS39-211ENST00000568755 GIGYF1O75420 1035 aaPredicted RBP13.92□□□□□ -0.18
VPS39-211ENST00000568755 TNNT2P45379 298 aaPredicted RBP13.92□□□□□ -0.18
VPS39-211ENST00000568755 ATG3Q9NT62 314 aa13.92□□□□□ -0.18
VPS39-211ENST00000568755 CICQ96RK0 1608 aaPredicted RBP13.91□□□□□ -0.18
VPS39-211ENST00000568755 POLR3GLQ9BT43 218 aa13.91□□□□□ -0.18
VPS39-211ENST00000568755 ADCY9O60503 1353 aa13.91□□□□□ -0.18
VPS39-211ENST00000568755 KDM6AO15550 1401 aaPredicted RBP13.9□□□□□ -0.18
VPS39-211ENST00000568755 ATP10DQ9P241 1426 aa13.9□□□□□ -0.18
VPS39-211ENST00000568755 HSPA5P11021 654 aaKnown RBP13.9□□□□□ -0.18
VPS39-211ENST00000568755 ATP6V1AP38606 617 aa13.9□□□□□ -0.18
VPS39-211ENST00000568755 PANK3Q9H999 370 aa13.9□□□□□ -0.18
VPS39-211ENST00000568755 ERVV-2B6SEH9 535 aa13.89□□□□□ -0.19
VPS39-211ENST00000568755 GNPATO15228 680 aa13.89□□□□□ -0.19
VPS39-211ENST00000568755 EIF4G2P78344 907 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS39-211ENST00000568755 SLC4A9Q96Q91 983 aa13.89□□□□□ -0.19
VPS39-211ENST00000568755 PCGF6Q9BYE7 350 aa13.89□□□□□ -0.19
VPS39-211ENST00000568755 TJP1Q07157 1748 aa13.89□□□□□ -0.19
VPS39-211ENST00000568755 ARFGEF1Q9Y6D6 1849 aa13.87□□□□□ -0.19
VPS39-211ENST00000568755 DCAF5Q96JK2 942 aa13.87□□□□□ -0.19
VPS39-211ENST00000568755 PXDNLA1KZ92 1463 aa13.87□□□□□ -0.19
VPS39-211ENST00000568755 ADAMTS7Q9UKP4 1686 aa13.86□□□□□ -0.19
VPS39-211ENST00000568755 HSP90AB1P08238 724 aaKnown RBP13.86□□□□□ -0.19
VPS39-211ENST00000568755 PLEKHO1Q53GL0 409 aaPredicted RBP13.86□□□□□ -0.19
VPS39-211ENST00000568755 RNF39Q9H2S5 420 aa13.86□□□□□ -0.19
VPS39-211ENST00000568755 CNTNAP4Q9C0A0 1308 aa13.86□□□□□ -0.19
VPS39-211ENST00000568755 MMP10P09238 476 aa13.85□□□□□ -0.19
VPS39-211ENST00000568755 ZNF530Q6P9A1 599 aaPredicted RBP13.85□□□□□ -0.19
VPS39-211ENST00000568755 AEBP1Q8IUX7 1158 aa13.85□□□□□ -0.19
VPS39-211ENST00000568755 C10orf71Q711Q0 1435 aa13.84□□□□□ -0.19
VPS39-211ENST00000568755 AMOTQ4VCS5 1084 aa13.84□□□□□ -0.19
VPS39-211ENST00000568755 RC3H1Q5TC82 1133 aaKnown RBP13.84□□□□□ -0.19
VPS39-211ENST00000568755 WWC3Q9ULE0 1092 aa13.84□□□□□ -0.19
VPS39-211ENST00000568755 RTCBQ9Y3I0 505 aaKnown RBP13.84□□□□□ -0.19
VPS39-211ENST00000568755 TRAPPC3LQ5T215 181 aa13.83□□□□□ -0.2
VPS39-211ENST00000568755 RBM42Q9BTD8 480 aaKnown RBP13.83□□□□□ -0.2
VPS39-211ENST00000568755 RPS6KA4O75676 772 aa13.82□□□□□ -0.2
VPS39-211ENST00000568755 GYS1P13807 737 aa13.82□□□□□ -0.2
VPS39-211ENST00000568755 IL13P35225 146 aa13.82□□□□□ -0.2
VPS39-211ENST00000568755 CABP4P57796 275 aa13.82□□□□□ -0.2
VPS39-211ENST00000568755 MORC1Q86VD1 984 aa13.82□□□□□ -0.2
VPS39-211ENST00000568755 ARHGEF1Q92888 912 aaKnown RBP13.82□□□□□ -0.2
VPS39-211ENST00000568755 GPBP1L1Q9HC44 474 aaPredicted RBP13.82□□□□□ -0.2
VPS39-211ENST00000568755 AFDNP55196 1824 aaKnown RBP13.82□□□□□ -0.2
VPS39-211ENST00000568755 SBF1O95248 1867 aa13.82□□□□□ -0.2
VPS39-211ENST00000568755 MTHFSP49914 203 aa13.81□□□□□ -0.2
VPS39-211ENST00000568755 NLGN1Q8N2Q7 840 aa13.81□□□□□ -0.2
VPS39-211ENST00000568755 MRC1P22897 1456 aa13.8□□□□□ -0.2
VPS39-211ENST00000568755 AMER1Q5JTC6 1135 aaPredicted RBP13.8□□□□□ -0.2
VPS39-211ENST00000568755 C1orf141Q5JVX7 400 aa13.8□□□□□ -0.2
VPS39-211ENST00000568755 SULT6B1Q6IMI4 303 aa13.8□□□□□ -0.2
VPS39-211ENST00000568755 UBR2Q8IWV8 1755 aa13.8□□□□□ -0.2
VPS39-211ENST00000568755 TGFB2P61812 414 aa13.79□□□□□ -0.2
VPS39-211ENST00000568755 NFATC2IPQ8NCF5 419 aa13.79□□□□□ -0.2
VPS39-211ENST00000568755 KNSTRNQ9Y448 316 aa13.79□□□□□ -0.2
VPS39-211ENST00000568755 PTCD1O75127 700 aaKnown RBP13.78□□□□□ -0.2
VPS39-211ENST00000568755 RFC4P35249 363 aa13.78□□□□□ -0.2
VPS39-211ENST00000568755 CRKLP46109 303 aaKnown RBP13.78□□□□□ -0.2
VPS39-211ENST00000568755 ZNF526Q8TF50 670 aaPredicted RBP13.78□□□□□ -0.2
VPS39-211ENST00000568755 A0A0G2JLW4 131 aa13.77□□□□□ -0.21
VPS39-211ENST00000568755 CCDC87Q9NVE4 849 aa13.77□□□□□ -0.21
VPS39-211ENST00000568755 NRXN2Q9P2S2 1712 aa13.77□□□□□ -0.21
VPS39-211ENST00000568755 CCDC88AQ3V6T2 1871 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 SIPA1L3O60292 1781 aaPredicted RBP13.76□□□□□ -0.21
VPS39-211ENST00000568755 DLEC1Q9Y238 1755 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 KCPQ6ZWJ8 1503 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 KIF7Q2M1P5 1343 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 USP42Q9H9J4 1324 aaKnown RBP13.76□□□□□ -0.21
VPS39-211ENST00000568755 KIF3CO14782 793 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 DPEP1P16444 411 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 AKAP4Q5JQC9 854 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 CCER1Q8TC90 406 aaPredicted RBP13.76□□□□□ -0.21
VPS39-211ENST00000568755 PARP3Q9Y6F1 533 aa13.76□□□□□ -0.21
VPS39-211ENST00000568755 KCNA3P22001 575 aa13.75□□□□□ -0.21
VPS39-211ENST00000568755 CACNB1Q02641 598 aaPredicted RBP13.75□□□□□ -0.21
VPS39-211ENST00000568755 INTS5Q6P9B9 1019 aaKnown RBP13.75□□□□□ -0.21
VPS39-211ENST00000568755 SLC52A2Q9HAB3 445 aa13.75□□□□□ -0.21
VPS39-211ENST00000568755 SRP68Q9UHB9 627 aaKnown RBP13.75□□□□□ -0.21
VPS39-211ENST00000568755 BCS1LQ9Y276 419 aa13.75□□□□□ -0.21
VPS39-211ENST00000568755 HSPA6P17066 643 aa13.74□□□□□ -0.21
VPS39-211ENST00000568755 DDR1Q08345 913 aa13.74□□□□□ -0.21
VPS39-211ENST00000568755 FKBP8Q14318 412 aa13.74□□□□□ -0.21
VPS39-211ENST00000568755 LGR6Q9HBX8 967 aa13.74□□□□□ -0.21
VPS39-211ENST00000568755 PER1O15534 1290 aaPredicted RBP13.73□□□□□ -0.21
VPS39-211ENST00000568755 COL3A1P02461 1466 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms