RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 ATG3Q9NT62 314 aa21.38■■□□□ 1.01
NME3-211ENST00000568561 COL5A3P25940 1745 aaPredicted RBP21.38■■□□□ 1.01
NME3-211ENST00000568561 ATP10DQ9P241 1426 aa21.38■■□□□ 1.01
NME3-211ENST00000568561 PANK3Q9H999 370 aa21.37■■□□□ 1.01
NME3-211ENST00000568561 KDRP35968 1356 aa21.36■■□□□ 1.01
NME3-211ENST00000568561 EIF4G2P78344 907 aaKnown RBP eCLIP21.36■■□□□ 1.01
NME3-211ENST00000568561 KDM6AO15550 1401 aaPredicted RBP21.34■■□□□ 1.01
NME3-211ENST00000568561 KIAA1551Q9HCM1 1747 aa21.33■■□□□ 1.01
NME3-211ENST00000568561 AEBP1Q8IUX7 1158 aa21.33■■□□□ 1.01
NME3-211ENST00000568561 SLC4A9Q96Q91 983 aa21.33■■□□□ 1.01
NME3-211ENST00000568561 ZNF831Q5JPB2 1677 aa21.33■■□□□ 1
NME3-211ENST00000568561 N4BP2Q86UW6 1770 aaPredicted RBP21.33■■□□□ 1
NME3-211ENST00000568561 C4AP0C0L4 1744 aa21.32■■□□□ 1
NME3-211ENST00000568561 ZNF530Q6P9A1 599 aaPredicted RBP21.32■■□□□ 1
NME3-211ENST00000568561 RBM42Q9BTD8 480 aaKnown RBP21.32■■□□□ 1
NME3-211ENST00000568561 CICQ96RK0 1608 aaPredicted RBP21.32■■□□□ 1
NME3-211ENST00000568561 KIF13BQ9NQT8 1826 aa21.32■■□□□ 1
NME3-211ENST00000568561 MYH14Q7Z406 1995 aaKnown RBP21.31■■□□□ 1
NME3-211ENST00000568561 PLEKHG2Q9H7P9 1386 aa21.31■■□□□ 1
NME3-211ENST00000568561 MMP10P09238 476 aa21.3■■□□□ 1
NME3-211ENST00000568561 ZNF526Q8TF50 670 aaPredicted RBP21.3■■□□□ 1
NME3-211ENST00000568561 ADCY9O60503 1353 aa21.3■■□□□ 1
NME3-211ENST00000568561 PLEKHO1Q53GL0 409 aaPredicted RBP21.29■■□□□ 1
NME3-211ENST00000568561 MORC1Q86VD1 984 aa21.29■■□□□ 1
NME3-211ENST00000568561 DCAF5Q96JK2 942 aa21.29■■□□□ 1
NME3-211ENST00000568561 ERVV-2B6SEH9 535 aa21.28■■□□□ 1
NME3-211ENST00000568561 PXDNLA1KZ92 1463 aa21.27■■□□□ 1
NME3-211ENST00000568561 TJP1Q07157 1748 aa21.27■■□□□ 1
NME3-211ENST00000568561 RTCBQ9Y3I0 505 aaKnown RBP21.27■■□□□ 1
NME3-211ENST00000568561 CEP350Q5VT06 3117 aa21.27■□□□□ 0.99
NME3-211ENST00000568561 SCN11AQ9UI33 1791 aa21.26■□□□□ 0.99
NME3-211ENST00000568561 HSP90AB1P08238 724 aaKnown RBP21.26■□□□□ 0.99
NME3-211ENST00000568561 CABP4P57796 275 aa21.26■□□□□ 0.99
NME3-211ENST00000568561 TRAPPC3LQ5T215 181 aa21.26■□□□□ 0.99
NME3-211ENST00000568561 VIRMAQ69YN4 1812 aaKnown RBP21.25■□□□□ 0.99
NME3-211ENST00000568561 GPBP1L1Q9HC44 474 aaPredicted RBP21.25■□□□□ 0.99
NME3-211ENST00000568561 PTCD1O75127 700 aaKnown RBP21.24■□□□□ 0.99
NME3-211ENST00000568561 AMOTQ4VCS5 1084 aa21.24■□□□□ 0.99
NME3-211ENST00000568561 SULT6B1Q6IMI4 303 aa21.24■□□□□ 0.99
NME3-211ENST00000568561 CCER1Q8TC90 406 aaPredicted RBP21.24■□□□□ 0.99
NME3-211ENST00000568561 ARHGEF1Q92888 912 aaKnown RBP21.24■□□□□ 0.99
NME3-211ENST00000568561 CNTNAP4Q9C0A0 1308 aa21.24■□□□□ 0.99
NME3-211ENST00000568561 C10orf71Q711Q0 1435 aa21.23■□□□□ 0.99
NME3-211ENST00000568561 MTHFSP49914 203 aa21.23■□□□□ 0.99
NME3-211ENST00000568561 C1orf141Q5JVX7 400 aa21.23■□□□□ 0.99
NME3-211ENST00000568561 BRCA1P38398 1863 aaKnown RBP21.22■□□□□ 0.99
NME3-211ENST00000568561 GYS1P13807 737 aa21.21■□□□□ 0.99
NME3-211ENST00000568561 KNSTRNQ9Y448 316 aa21.21■□□□□ 0.99
NME3-211ENST00000568561 A0A0G2JLW4 131 aa21.2■□□□□ 0.98
NME3-211ENST00000568561 RPS6KA4O75676 772 aa21.2■□□□□ 0.98
NME3-211ENST00000568561 IL13P35225 146 aa21.2■□□□□ 0.98
NME3-211ENST00000568561 RFC4P35249 363 aa21.2■□□□□ 0.98
NME3-211ENST00000568561 RC3H1Q5TC82 1133 aaKnown RBP21.2■□□□□ 0.98
NME3-211ENST00000568561 NLGN1Q8N2Q7 840 aa21.2■□□□□ 0.98
NME3-211ENST00000568561 NFATC2IPQ8NCF5 419 aa21.2■□□□□ 0.98
NME3-211ENST00000568561 ADRA2BP18089 450 aa21.19■□□□□ 0.98
NME3-211ENST00000568561 SRP68Q9UHB9 627 aaKnown RBP21.18■□□□□ 0.98
NME3-211ENST00000568561 BCS1LQ9Y276 419 aa21.18■□□□□ 0.98
NME3-211ENST00000568561 CRKLP46109 303 aaKnown RBP21.17■□□□□ 0.98
NME3-211ENST00000568561 AMER1Q5JTC6 1135 aaPredicted RBP21.17■□□□□ 0.98
NME3-211ENST00000568561 ADAMTS7Q9UKP4 1686 aa21.17■□□□□ 0.98
NME3-211ENST00000568561 KIF7Q2M1P5 1343 aa21.16■□□□□ 0.98
NME3-211ENST00000568561 DPEP1P16444 411 aa21.16■□□□□ 0.98
NME3-211ENST00000568561 CCDC87Q9NVE4 849 aa21.16■□□□□ 0.98
NME3-211ENST00000568561 PARP3Q9Y6F1 533 aa21.16■□□□□ 0.98
NME3-211ENST00000568561 TGFB2P61812 414 aa21.15■□□□□ 0.98
NME3-211ENST00000568561 ARFGEF1Q9Y6D6 1849 aa21.15■□□□□ 0.98
NME3-211ENST00000568561 HMOX1P09601 288 aa21.14■□□□□ 0.97
NME3-211ENST00000568561 MRC1P22897 1456 aa21.13■□□□□ 0.97
NME3-211ENST00000568561 FKBP8Q14318 412 aa21.13■□□□□ 0.97
NME3-211ENST00000568561 LGR6Q9HBX8 967 aa21.13■□□□□ 0.97
NME3-211ENST00000568561 USP42Q9H9J4 1324 aaKnown RBP21.12■□□□□ 0.97
NME3-211ENST00000568561 DDR1Q08345 913 aa21.12■□□□□ 0.97
NME3-211ENST00000568561 AKAP4Q5JQC9 854 aa21.12■□□□□ 0.97
NME3-211ENST00000568561 DNAJC10Q8IXB1 793 aa21.12■□□□□ 0.97
NME3-211ENST00000568561 KIF3CO14782 793 aa21.11■□□□□ 0.97
NME3-211ENST00000568561 FCHSD2O94868 740 aa21.11■□□□□ 0.97
NME3-211ENST00000568561 ARHGAP27Q6ZUM4 889 aa21.11■□□□□ 0.97
NME3-211ENST00000568561 KCPQ6ZWJ8 1503 aa21.1■□□□□ 0.97
NME3-211ENST00000568561 SLC39A6Q13433 755 aa21.1■□□□□ 0.97
NME3-211ENST00000568561 INTS5Q6P9B9 1019 aaKnown RBP21.1■□□□□ 0.97
NME3-211ENST00000568561 SLC52A2Q9HAB3 445 aa21.1■□□□□ 0.97
NME3-211ENST00000568561 AFDNP55196 1824 aaKnown RBP21.09■□□□□ 0.97
NME3-211ENST00000568561 HSPA6P17066 643 aa21.09■□□□□ 0.97
NME3-211ENST00000568561 CC2D1BQ5T0F9 858 aaKnown RBP21.09■□□□□ 0.97
NME3-211ENST00000568561 UBR2Q8IWV8 1755 aa21.08■□□□□ 0.97
NME3-211ENST00000568561 KCNA3P22001 575 aa21.08■□□□□ 0.97
NME3-211ENST00000568561 CNGB1Q14028 1251 aaPredicted RBP21.08■□□□□ 0.97
NME3-211ENST00000568561 RNMTO43148 476 aaKnown RBP21.07■□□□□ 0.96
NME3-211ENST00000568561 SOS1Q07889 1333 aaPredicted RBP21.06■□□□□ 0.96
NME3-211ENST00000568561 CHRNA5P30532 468 aa21.06■□□□□ 0.96
NME3-211ENST00000568561 MTHFSDQ2M296 383 aaKnown RBP21.06■□□□□ 0.96
NME3-211ENST00000568561 USPL1Q5W0Q7 1092 aa21.06■□□□□ 0.96
NME3-211ENST00000568561 COL3A1P02461 1466 aaPredicted RBP21.05■□□□□ 0.96
NME3-211ENST00000568561 POLRMTO00411 1230 aaKnown RBP21.04■□□□□ 0.96
NME3-211ENST00000568561 PER1O15534 1290 aaPredicted RBP21.04■□□□□ 0.96
NME3-211ENST00000568561 DIAPH1O60610 1272 aaKnown RBP21.04■□□□□ 0.96
NME3-211ENST00000568561 CYP19A1P11511 503 aaPredicted RBP21.04■□□□□ 0.96
NME3-211ENST00000568561 NMRK2Q9NPI5 230 aa21.04■□□□□ 0.96
NME3-211ENST00000568561 PIM2Q9P1W9 311 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms