RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SRCAPQ6ZRS2 3230 aa8.92□□□□□ -0.98
VPS39-209ENST00000568029 PTPRKQ15262 1439 aa8.92□□□□□ -0.98
VPS39-209ENST00000568029 ZEB1P37275 1124 aaPredicted RBP8.92□□□□□ -0.98
VPS39-209ENST00000568029 SH3BP2P78314 561 aa8.92□□□□□ -0.98
VPS39-209ENST00000568029 PLA2G2CQ5R387 149 aa8.92□□□□□ -0.98
VPS39-209ENST00000568029 ARID3AQ99856 593 aa8.92□□□□□ -0.98
VPS39-209ENST00000568029 RNF17Q9BXT8 1623 aaKnown RBP8.91□□□□□ -0.98
VPS39-209ENST00000568029 CNTLNQ9NXG0 1405 aa8.91□□□□□ -0.98
VPS39-209ENST00000568029 ZMYM3Q14202 1370 aa8.91□□□□□ -0.98
VPS39-209ENST00000568029 PPP1R15AO75807 674 aaPredicted RBP8.91□□□□□ -0.98
VPS39-209ENST00000568029 POTEAQ6S8J7 498 aa8.91□□□□□ -0.98
VPS39-209ENST00000568029 TRMT44Q8IYL2 757 aaKnown RBP8.91□□□□□ -0.98
VPS39-209ENST00000568029 UCN2Q96RP3 112 aa8.91□□□□□ -0.98
VPS39-209ENST00000568029 PPP1R12CQ9BZL4 782 aa8.91□□□□□ -0.98
VPS39-209ENST00000568029 PLXNC1O60486 1568 aa8.9□□□□□ -0.98
VPS39-209ENST00000568029 SAMD9LQ8IVG5 1584 aa8.9□□□□□ -0.98
VPS39-209ENST00000568029 CD2BP2O95400 341 aaKnown RBP8.9□□□□□ -0.98
VPS39-209ENST00000568029 CDV3Q9UKY7 258 aaKnown RBP8.9□□□□□ -0.98
VPS39-209ENST00000568029 CLIP1P30622 1438 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 XIRP1Q702N8 1843 aaKnown RBP8.89□□□□□ -0.99
VPS39-209ENST00000568029 CDC42BPAQ5VT25 1732 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 LINC01559Q495D7 138 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 ERFEQ4G0M1 354 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 C4orf48Q5BLP8 95 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 EFCAB2Q5VUJ9 269 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 CCDC125Q86Z20 511 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 FOXJ1Q92949 421 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 CEP126Q9P2H0 1117 aa8.89□□□□□ -0.99
VPS39-209ENST00000568029 PALM3A6NDB9 673 aaPredicted RBP8.88□□□□□ -0.99
VPS39-209ENST00000568029 TOM1O60784 492 aa8.88□□□□□ -0.99
VPS39-209ENST00000568029 VARSP26640 1264 aaKnown RBP8.88□□□□□ -0.99
VPS39-209ENST00000568029 AGERQ15109 404 aa8.88□□□□□ -0.99
VPS39-209ENST00000568029 CFAP70Q5T0N1 1121 aa8.88□□□□□ -0.99
VPS39-209ENST00000568029 PPARGC1BQ86YN6 1023 aaKnown RBP8.88□□□□□ -0.99
VPS39-209ENST00000568029 ESF1Q9H501 851 aaKnown RBP8.88□□□□□ -0.99
VPS39-209ENST00000568029 PCDHB9Q9Y5E1 797 aa8.88□□□□□ -0.99
VPS39-209ENST00000568029 A2ML1A8K2U0 1454 aa8.88□□□□□ -0.99
VPS39-209ENST00000568029 INO80Q9ULG1 1556 aaPredicted RBP8.87□□□□□ -0.99
VPS39-209ENST00000568029 LRRC7Q96NW7 1537 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 SYCP2Q9BX26 1530 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 MAGEB6P1A0A0J9YX57 407 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 ATP9BO43861 1147 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 DZIP3Q86Y13 1208 aaKnown RBP8.87□□□□□ -0.99
VPS39-209ENST00000568029 PHTF2Q8N3S3 785 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 MPNDQ8N594 471 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 CHIC2Q9UKJ5 165 aa8.87□□□□□ -0.99
VPS39-209ENST00000568029 IQGAP1P46940 1657 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 A0A0G2JS52 829 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 LZTS3O60299 673 aaPredicted RBP8.86□□□□□ -0.99
VPS39-209ENST00000568029 SKOR1P84550 965 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 SLC10A4Q96EP9 437 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 CARD14Q9BXL6 1004 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 TFIP11Q9UBB9 837 aaKnown RBP8.86□□□□□ -0.99
VPS39-209ENST00000568029 MAP4K5Q9Y4K4 846 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 SYNMO15061 1565 aa8.86□□□□□ -0.99
VPS39-209ENST00000568029 NBPF20Q3BBV1 942 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 SLFNL1Q499Z3 407 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 RNF20Q5VTR2 975 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 LIAT1Q6ZQX7 453 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 PLEKHM2Q8IWE5 1019 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 SEPT12Q8IYM1 358 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 FAM174AQ8TBP5 190 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 PBXIP1Q96AQ6 731 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 MAFBQ9Y5Q3 323 aaPredicted RBP8.85□□□□□ -0.99
VPS39-209ENST00000568029 TROQ12816 1431 aaPredicted RBP8.85□□□□□ -0.99
VPS39-209ENST00000568029 ATP7AQ04656 1500 aa8.85□□□□□ -0.99
VPS39-209ENST00000568029 ZC3H13Q5T200 1668 aaKnown RBP8.85□□□□□ -0.99
VPS39-209ENST00000568029 ESPNB1AK53 854 aa8.84□□□□□ -0.99
VPS39-209ENST00000568029 SRPK2P78362 688 aaKnown RBP8.84□□□□□ -0.99
VPS39-209ENST00000568029 MAP7D1Q3KQU3 841 aa8.84□□□□□ -0.99
VPS39-209ENST00000568029 TBC1D9Q6ZT07 1266 aa8.84□□□□□ -0.99
VPS39-209ENST00000568029 EMID1Q96A84 441 aaPredicted RBP8.84□□□□□ -0.99
VPS39-209ENST00000568029 SLC19A1P41440 591 aa8.83□□□□□ -1
VPS39-209ENST00000568029 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.83□□□□□ -1
VPS39-209ENST00000568029 VPS8Q8N3P4 1428 aa8.82□□□□□ -1
VPS39-209ENST00000568029 RNF135Q8IUD6 432 aa8.82□□□□□ -1
VPS39-209ENST00000568029 CDK15Q96Q40 435 aa8.82□□□□□ -1
VPS39-209ENST00000568029 V9GY48 417 aaPredicted RBP8.82□□□□□ -1
VPS39-209ENST00000568029 DEPDC5O75140 1603 aa8.82□□□□□ -1
VPS39-209ENST00000568029 NPHP4O75161 1426 aaPredicted RBP8.81□□□□□ -1
VPS39-209ENST00000568029 PIK3CDO00329 1044 aa8.81□□□□□ -1
VPS39-209ENST00000568029 WNT7AO00755 349 aa8.81□□□□□ -1
VPS39-209ENST00000568029 RGS20O76081 388 aa8.81□□□□□ -1
VPS39-209ENST00000568029 LMOD1P29536 600 aaPredicted RBP8.81□□□□□ -1
VPS39-209ENST00000568029 RC3H1Q5TC82 1133 aaKnown RBP8.81□□□□□ -1
VPS39-209ENST00000568029 EHBP1Q8NDI1 1231 aa8.81□□□□□ -1
VPS39-209ENST00000568029 ADGBQ8N7X0 1667 aa8.81□□□□□ -1
VPS39-209ENST00000568029 USP17L5A8MUK1 530 aa8.8□□□□□ -1
VPS39-209ENST00000568029 SKIP12755 728 aa8.8□□□□□ -1
VPS39-209ENST00000568029 SPRYD7Q5W111 196 aa8.8□□□□□ -1
VPS39-209ENST00000568029 TRIM52Q96A61 297 aa8.8□□□□□ -1
VPS39-209ENST00000568029 A2MP01023 1474 aa8.8□□□□□ -1
VPS39-209ENST00000568029 ROBO1Q9Y6N7 1651 aa8.8□□□□□ -1
VPS39-209ENST00000568029 ACIN1Q9UKV3 1341 aaKnown RBP8.8□□□□□ -1
VPS39-209ENST00000568029 MED14O60244 1454 aa8.79□□□□□ -1
VPS39-209ENST00000568029 ARHGAP35Q9NRY4 1499 aa8.79□□□□□ -1
VPS39-209ENST00000568029 USP17L3A6NCW0 530 aa8.79□□□□□ -1
VPS39-209ENST00000568029 USP17L4A6NCW7 530 aa8.79□□□□□ -1
VPS39-209ENST00000568029 GIGYF1O75420 1035 aaPredicted RBP8.79□□□□□ -1
VPS39-209ENST00000568029 USP17L2Q6R6M4 530 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 172.4 ms