RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZNF784Q8NCA9 323 aaPredicted RBP21.95■■□□□ 1.1
CLN3-229ENST00000567963 PHF14O94880 888 aa21.94■■□□□ 1.1
CLN3-229ENST00000567963 SSFA2P28290 1259 aa21.94■■□□□ 1.1
CLN3-229ENST00000567963 ITPK1Q13572 414 aa21.94■■□□□ 1.1
CLN3-229ENST00000567963 SMIM5Q71RC9 77 aa21.94■■□□□ 1.1
CLN3-229ENST00000567963 AEBP1Q8IUX7 1158 aa21.94■■□□□ 1.1
CLN3-229ENST00000567963 PELP1Q8IZL8 1130 aaKnown RBP21.93■■□□□ 1.1
CLN3-229ENST00000567963 IL13P35225 146 aa21.92■■□□□ 1.1
CLN3-229ENST00000567963 ZNF530Q6P9A1 599 aaPredicted RBP21.92■■□□□ 1.1
CLN3-229ENST00000567963 SULT6B1Q6IMI4 303 aa21.91■■□□□ 1.1
CLN3-229ENST00000567963 PER1O15534 1290 aaPredicted RBP21.9■■□□□ 1.1
CLN3-229ENST00000567963 CD2APQ9Y5K6 639 aa21.9■■□□□ 1.1
CLN3-229ENST00000567963 KDRP35968 1356 aa21.9■■□□□ 1.1
CLN3-229ENST00000567963 GNPATO15228 680 aa21.9■■□□□ 1.1
CLN3-229ENST00000567963 KDM6AO15550 1401 aaPredicted RBP21.9■■□□□ 1.1
CLN3-229ENST00000567963 MTHFSP49914 203 aa21.89■■□□□ 1.09
CLN3-229ENST00000567963 CABP4P57796 275 aa21.89■■□□□ 1.09
CLN3-229ENST00000567963 C1orf141Q5JVX7 400 aa21.89■■□□□ 1.09
CLN3-229ENST00000567963 SLC4A9Q96Q91 983 aa21.89■■□□□ 1.09
CLN3-229ENST00000567963 YBX3P16989 372 aaKnown RBP eCLIP21.88■■□□□ 1.09
CLN3-229ENST00000567963 RBM42Q9BTD8 480 aaKnown RBP21.88■■□□□ 1.09
CLN3-229ENST00000567963 ZNF831Q5JPB2 1677 aa21.86■■□□□ 1.09
CLN3-229ENST00000567963 GRIN3BO60391 1043 aa21.86■■□□□ 1.09
CLN3-229ENST00000567963 NFATC2IPQ8NCF5 419 aa21.84■■□□□ 1.09
CLN3-229ENST00000567963 CC2D1BQ5T0F9 858 aaKnown RBP21.83■■□□□ 1.09
CLN3-229ENST00000567963 TRAPPC3LQ5T215 181 aa21.83■■□□□ 1.09
CLN3-229ENST00000567963 RC3H1Q5TC82 1133 aaKnown RBP21.83■■□□□ 1.09
CLN3-229ENST00000567963 RTCBQ9Y3I0 505 aaKnown RBP21.83■■□□□ 1.09
CLN3-229ENST00000567963 COL5A3P25940 1745 aaPredicted RBP21.81■■□□□ 1.08
CLN3-229ENST00000567963 CNTNAP4Q9C0A0 1308 aa21.81■■□□□ 1.08
CLN3-229ENST00000567963 AKAP4Q5JQC9 854 aa21.81■■□□□ 1.08
CLN3-229ENST00000567963 PTCD1O75127 700 aaKnown RBP21.8■■□□□ 1.08
CLN3-229ENST00000567963 SCN11AQ9UI33 1791 aa21.8■■□□□ 1.08
CLN3-229ENST00000567963 RPS6KA4O75676 772 aa21.79■■□□□ 1.08
CLN3-229ENST00000567963 HMOX1P09601 288 aa21.79■■□□□ 1.08
CLN3-229ENST00000567963 ADRA2BP18089 450 aa21.79■■□□□ 1.08
CLN3-229ENST00000567963 ARHGEF1Q92888 912 aaKnown RBP21.79■■□□□ 1.08
CLN3-229ENST00000567963 DIAPH1O60610 1272 aaKnown RBP21.78■■□□□ 1.08
CLN3-229ENST00000567963 MYH14Q7Z406 1995 aaKnown RBP21.78■■□□□ 1.08
CLN3-229ENST00000567963 MMP10P09238 476 aa21.77■■□□□ 1.08
CLN3-229ENST00000567963 NLGN1Q8N2Q7 840 aa21.77■■□□□ 1.08
CLN3-229ENST00000567963 LGR6Q9HBX8 967 aa21.77■■□□□ 1.08
CLN3-229ENST00000567963 NPC1L1Q9UHC9 1359 aa21.77■■□□□ 1.08
CLN3-229ENST00000567963 RFC4P35249 363 aa21.76■■□□□ 1.07
CLN3-229ENST00000567963 SLC52A2Q9HAB3 445 aa21.76■■□□□ 1.07
CLN3-229ENST00000567963 CRKLP46109 303 aaKnown RBP21.75■■□□□ 1.07
CLN3-229ENST00000567963 RNMTO43148 476 aaKnown RBP21.74■■□□□ 1.07
CLN3-229ENST00000567963 GYS1P13807 737 aa21.74■■□□□ 1.07
CLN3-229ENST00000567963 MTHFSDQ2M296 383 aaKnown RBP21.74■■□□□ 1.07
CLN3-229ENST00000567963 CNGB1Q14028 1251 aaPredicted RBP21.72■■□□□ 1.07
CLN3-229ENST00000567963 WWC3Q9ULE0 1092 aa21.72■■□□□ 1.07
CLN3-229ENST00000567963 CICQ96RK0 1608 aaPredicted RBP21.72■■□□□ 1.07
CLN3-229ENST00000567963 VIRMAQ69YN4 1812 aaKnown RBP21.72■■□□□ 1.07
CLN3-229ENST00000567963 C1QTNF8P60827 252 aa21.71■■□□□ 1.07
CLN3-229ENST00000567963 TJP1Q07157 1748 aa21.71■■□□□ 1.07
CLN3-229ENST00000567963 KIF13BQ9NQT8 1826 aa21.7■■□□□ 1.07
CLN3-229ENST00000567963 C4AP0C0L4 1744 aa21.7■■□□□ 1.06
CLN3-229ENST00000567963 COL3A1P02461 1466 aaPredicted RBP21.7■■□□□ 1.06
CLN3-229ENST00000567963 MRC1P22897 1456 aa21.7■■□□□ 1.06
CLN3-229ENST00000567963 TGFB2P61812 414 aa21.7■■□□□ 1.06
CLN3-229ENST00000567963 INTS5Q6P9B9 1019 aaKnown RBP21.7■■□□□ 1.06
CLN3-229ENST00000567963 SLC39A6Q13433 755 aa21.69■■□□□ 1.06
CLN3-229ENST00000567963 ADAMTS7Q9UKP4 1686 aa21.68■■□□□ 1.06
CLN3-229ENST00000567963 GIGYF1O75420 1035 aaPredicted RBP21.68■■□□□ 1.06
CLN3-229ENST00000567963 DNAJC10Q8IXB1 793 aa21.68■■□□□ 1.06
CLN3-229ENST00000567963 PARP3Q9Y6F1 533 aa21.68■■□□□ 1.06
CLN3-229ENST00000567963 PXDNLA1KZ92 1463 aa21.68■■□□□ 1.06
CLN3-229ENST00000567963 U2SURPO15042 1029 aaKnown RBP21.67■■□□□ 1.06
CLN3-229ENST00000567963 CCDC87Q9NVE4 849 aa21.67■■□□□ 1.06
CLN3-229ENST00000567963 SRP68Q9UHB9 627 aaKnown RBP21.67■■□□□ 1.06
CLN3-229ENST00000567963 USP42Q9H9J4 1324 aaKnown RBP21.67■■□□□ 1.06
CLN3-229ENST00000567963 C10orf71Q711Q0 1435 aa21.66■■□□□ 1.06
CLN3-229ENST00000567963 KIAA1551Q9HCM1 1747 aa21.66■■□□□ 1.06
CLN3-229ENST00000567963 N4BP2Q86UW6 1770 aaPredicted RBP21.66■■□□□ 1.06
CLN3-229ENST00000567963 A0A0G2JLW4 131 aa21.65■■□□□ 1.06
CLN3-229ENST00000567963 ATP10DQ9P241 1426 aa21.65■■□□□ 1.06
CLN3-229ENST00000567963 CYP19A1P11511 503 aaPredicted RBP21.64■■□□□ 1.06
CLN3-229ENST00000567963 FKBP8Q14318 412 aa21.64■■□□□ 1.06
CLN3-229ENST00000567963 KCPQ6ZWJ8 1503 aa21.64■■□□□ 1.05
CLN3-229ENST00000567963 ADCY9O60503 1353 aa21.63■■□□□ 1.05
CLN3-229ENST00000567963 VSIG10Q8N0Z9 540 aa21.63■■□□□ 1.05
CLN3-229ENST00000567963 GNAT3A8MTJ3 354 aa21.62■■□□□ 1.05
CLN3-229ENST00000567963 DPEP1P16444 411 aa21.62■■□□□ 1.05
CLN3-229ENST00000567963 GAS2L2Q8NHY3 880 aa21.62■■□□□ 1.05
CLN3-229ENST00000567963 SOS1Q07889 1333 aaPredicted RBP21.62■■□□□ 1.05
CLN3-229ENST00000567963 ZPR1O75312 459 aa21.61■■□□□ 1.05
CLN3-229ENST00000567963 IL17REQ8NFR9 667 aa21.61■■□□□ 1.05
CLN3-229ENST00000567963 BCS1LQ9Y276 419 aa21.61■■□□□ 1.05
CLN3-229ENST00000567963 SENP3-EIF4A1A0A087X0R7 540 aa21.6■■□□□ 1.05
CLN3-229ENST00000567963 TM4SF1P30408 202 aa21.6■■□□□ 1.05
CLN3-229ENST00000567963 DDR1Q08345 913 aa21.6■■□□□ 1.05
CLN3-229ENST00000567963 USPL1Q5W0Q7 1092 aa21.6■■□□□ 1.05
CLN3-229ENST00000567963 CFAP53Q96M91 514 aa21.6■■□□□ 1.05
CLN3-229ENST00000567963 UBR2Q8IWV8 1755 aa21.6■■□□□ 1.05
CLN3-229ENST00000567963 KCNA3P22001 575 aa21.59■■□□□ 1.05
CLN3-229ENST00000567963 GPBP1L1Q9HC44 474 aaPredicted RBP21.59■■□□□ 1.05
CLN3-229ENST00000567963 ZBTB1Q9Y2K1 713 aa21.59■■□□□ 1.05
CLN3-229ENST00000567963 TEFQ10587 303 aa21.58■■□□□ 1.05
CLN3-229ENST00000567963 TTC5Q8N0Z6 440 aa21.58■■□□□ 1.05
CLN3-229ENST00000567963 BRCA1P38398 1863 aaKnown RBP21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms