RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 LRP5O75197 1615 aa13.84□□□□□ -0.19
VPS9D1-206ENST00000567379 MPRIPQ6WCQ1 1025 aa13.84□□□□□ -0.19
VPS9D1-206ENST00000567379 API5Q9BZZ5 524 aaKnown RBP13.84□□□□□ -0.19
VPS9D1-206ENST00000567379 KRT24Q2M2I5 525 aa13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 CENPQQ7L2Z9 268 aaPredicted RBP13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 IFNL2Q8IZJ0 200 aa13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 CARD10Q9BWT7 1032 aa13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 CHMP4AQ9BY43 222 aa13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 CHMP4BQ9H444 224 aaKnown RBP13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 DDX19BQ9UMR2 479 aa13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 MEGF6O75095 1541 aa13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 COL14A1Q05707 1796 aaKnown RBP13.83□□□□□ -0.2
VPS9D1-206ENST00000567379 PKD1L3Q7Z443 1732 aa13.82□□□□□ -0.2
VPS9D1-206ENST00000567379 PARP4Q9UKK3 1724 aaKnown RBP13.82□□□□□ -0.2
VPS9D1-206ENST00000567379 TCERG1O14776 1098 aaKnown RBP13.82□□□□□ -0.2
VPS9D1-206ENST00000567379 HSP90AB1P08238 724 aaKnown RBP13.82□□□□□ -0.2
VPS9D1-206ENST00000567379 ITPRIPQ8IWB1 547 aa13.82□□□□□ -0.2
VPS9D1-206ENST00000567379 KDM3BQ7LBC6 1761 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 BTBD11A6QL63 1104 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 PHKG2P15735 406 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 CCDC30Q5VVM6 783 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 TMEM57Q8N5G2 664 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 NGLY1Q96IV0 654 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 STK31Q9BXU1 1019 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 STRN4Q9NRL3 753 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 ADAMTS7Q9UKP4 1686 aa13.81□□□□□ -0.2
VPS9D1-206ENST00000567379 QTRT2Q9H974 415 aaKnown RBP13.8□□□□□ -0.2
VPS9D1-206ENST00000567379 PTPRCP08575 1304 aa13.8□□□□□ -0.2
VPS9D1-206ENST00000567379 KDM2BQ8NHM5 1336 aa13.8□□□□□ -0.2
VPS9D1-206ENST00000567379 SCN11AQ9UI33 1791 aa13.8□□□□□ -0.2
VPS9D1-206ENST00000567379 HOXB7P09629 217 aa13.79□□□□□ -0.2
VPS9D1-206ENST00000567379 CCDC125Q86Z20 511 aa13.79□□□□□ -0.2
VPS9D1-206ENST00000567379 BTG4Q9NY30 223 aa13.79□□□□□ -0.2
VPS9D1-206ENST00000567379 CACNA1FO60840 1977 aa13.79□□□□□ -0.2
VPS9D1-206ENST00000567379 SIPA1L3O60292 1781 aaPredicted RBP13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 SLC4A2P04920 1241 aa13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 IL2RBP14784 551 aa13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 EIF4A1P60842 406 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 LARP1Q6PKG0 1096 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 ZCRB1Q8TBF4 217 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 DCAF5Q96JK2 942 aa13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 ABCC4O15439 1325 aa13.78□□□□□ -0.2
VPS9D1-206ENST00000567379 PCDH11XQ9BZA7 1347 aa13.77□□□□□ -0.21
VPS9D1-206ENST00000567379 PCDH11YQ9BZA8 1340 aa13.77□□□□□ -0.21
VPS9D1-206ENST00000567379 RWDD1Q9H446 243 aaPredicted RBP13.77□□□□□ -0.21
VPS9D1-206ENST00000567379 KDM6AO15550 1401 aaPredicted RBP13.76□□□□□ -0.21
VPS9D1-206ENST00000567379 CYP27B1O15528 508 aa13.76□□□□□ -0.21
VPS9D1-206ENST00000567379 SLC52A2Q9HAB3 445 aa13.76□□□□□ -0.21
VPS9D1-206ENST00000567379 HDGFL1Q5TGJ6 251 aa13.75□□□□□ -0.21
VPS9D1-206ENST00000567379 C8orf37Q96NL8 207 aa13.75□□□□□ -0.21
VPS9D1-206ENST00000567379 TSHZ2Q9NRE2 1034 aa13.75□□□□□ -0.21
VPS9D1-206ENST00000567379 KCNQ3O43525 872 aa13.74□□□□□ -0.21
VPS9D1-206ENST00000567379 INTS3Q68E01 1043 aaKnown RBP13.74□□□□□ -0.21
VPS9D1-206ENST00000567379 ZBTB40Q9NUA8 1239 aa13.74□□□□□ -0.21
VPS9D1-206ENST00000567379 PCDHB15Q9Y5E8 787 aa13.74□□□□□ -0.21
VPS9D1-206ENST00000567379 MRC1P22897 1456 aa13.74□□□□□ -0.21
VPS9D1-206ENST00000567379 EP400Q96L91 3159 aa13.73□□□□□ -0.21
VPS9D1-206ENST00000567379 IGHDP01880 384 aa13.73□□□□□ -0.21
VPS9D1-206ENST00000567379 CABP4P57796 275 aa13.73□□□□□ -0.21
VPS9D1-206ENST00000567379 NECTIN2Q92692 538 aa13.73□□□□□ -0.21
VPS9D1-206ENST00000567379 PLCH1Q4KWH8 1693 aa13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 ZBTB7BO15156 539 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 ADAMTS2O95450 1211 aa13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 EIF2S2P20042 333 aaKnown RBP13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 NKX1-1Q15270 411 aaPredicted RBP13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 ZNF790Q6PG37 636 aa13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 G2E3Q7L622 706 aa13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 NFATC2IPQ8NCF5 419 aa13.72□□□□□ -0.21
VPS9D1-206ENST00000567379 ERVV-2B6SEH9 535 aa13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 GIGYF1O75420 1035 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 CCT4P50991 539 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 FLIIQ13045 1269 aa13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 TTC5Q8N0Z6 440 aa13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 DDX54Q8TDD1 881 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 USP35Q9P2H5 1018 aa13.71□□□□□ -0.21
VPS9D1-206ENST00000567379 HEG1Q9ULI3 1381 aa13.71□□□□□ -0.22
VPS9D1-206ENST00000567379 FKBP5Q13451 457 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-206ENST00000567379 HDAC1Q13547 482 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-206ENST00000567379 SHANK3Q9BYB0 1731 aa13.7□□□□□ -0.22
VPS9D1-206ENST00000567379 SLC39A6Q13433 755 aa13.69□□□□□ -0.22
VPS9D1-206ENST00000567379 CDCA7Q9BWT1 371 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-206ENST00000567379 DBF4Q9UBU7 674 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-206ENST00000567379 NRAPQ86VF7 1730 aa13.68□□□□□ -0.22
VPS9D1-206ENST00000567379 NWD2Q9ULI1 1742 aa13.68□□□□□ -0.22
VPS9D1-206ENST00000567379 DISP2A7MBM2 1401 aa13.68□□□□□ -0.22
VPS9D1-206ENST00000567379 SLC4A10Q6U841 1118 aa13.68□□□□□ -0.22
VPS9D1-206ENST00000567379 FMNL2Q96PY5 1086 aa13.68□□□□□ -0.22
VPS9D1-206ENST00000567379 CHPF2Q9P2E5 772 aa13.68□□□□□ -0.22
VPS9D1-206ENST00000567379 WNK3Q9BYP7 1800 aa13.67□□□□□ -0.22
VPS9D1-206ENST00000567379 F6X3S4 739 aa13.67□□□□□ -0.22
VPS9D1-206ENST00000567379 IFFO2Q5TF58 517 aa13.67□□□□□ -0.22
VPS9D1-206ENST00000567379 TRPC5Q9UL62 973 aaPredicted RBP13.67□□□□□ -0.22
VPS9D1-206ENST00000567379 THRAP3Q9Y2W1 955 aaKnown RBP13.67□□□□□ -0.22
VPS9D1-206ENST00000567379 PXDNLA1KZ92 1463 aa13.67□□□□□ -0.22
VPS9D1-206ENST00000567379 EXOC5O00471 708 aa13.66□□□□□ -0.22
VPS9D1-206ENST00000567379 SNRPA1P09661 255 aaKnown RBP13.66□□□□□ -0.22
VPS9D1-206ENST00000567379 HYPKQ9NX55 129 aa13.66□□□□□ -0.22
VPS9D1-206ENST00000567379 N4BP2Q86UW6 1770 aaPredicted RBP13.66□□□□□ -0.22
VPS9D1-206ENST00000567379 ZNF496Q96IT1 587 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-206ENST00000567379 PHAXQ9H814 394 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms