RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ZNF831Q5JPB2 1677 aa23.7■■□□□ 1.38
CDH3-205ENST00000566808 FSTL1Q12841 308 aa23.69■■□□□ 1.38
CDH3-205ENST00000566808 ANKRD26Q9UPS8 1709 aa23.68■■□□□ 1.38
CDH3-205ENST00000566808 NKX1-1Q15270 411 aaPredicted RBP23.67■■□□□ 1.38
CDH3-205ENST00000566808 HSP90AB2PQ58FF8 381 aa23.67■■□□□ 1.38
CDH3-205ENST00000566808 ARHGAP27Q6ZUM4 889 aa23.67■■□□□ 1.38
CDH3-205ENST00000566808 COL5A3P25940 1745 aaPredicted RBP23.67■■□□□ 1.38
CDH3-205ENST00000566808 CAPN15O75808 1086 aa23.66■■□□□ 1.38
CDH3-205ENST00000566808 A0A0G2JLW4 131 aa23.65■■□□□ 1.38
CDH3-205ENST00000566808 ITPK1Q13572 414 aa23.65■■□□□ 1.38
CDH3-205ENST00000566808 TNS4Q8IZW8 715 aa23.65■■□□□ 1.38
CDH3-205ENST00000566808 GGNBP2Q9H3C7 697 aa23.65■■□□□ 1.38
CDH3-205ENST00000566808 TMOD3Q9NYL9 352 aa23.65■■□□□ 1.38
CDH3-205ENST00000566808 KCPQ6ZWJ8 1503 aa23.64■■□□□ 1.38
CDH3-205ENST00000566808 FYB1O15117 783 aa23.64■■□□□ 1.37
CDH3-205ENST00000566808 PRELPP51888 382 aa23.64■■□□□ 1.37
CDH3-205ENST00000566808 HTRA3P83110 453 aa23.64■■□□□ 1.37
CDH3-205ENST00000566808 TESK2Q96S53 571 aa23.64■■□□□ 1.37
CDH3-205ENST00000566808 KDM2BQ8NHM5 1336 aa23.63■■□□□ 1.37
CDH3-205ENST00000566808 FCHSD2O94868 740 aa23.63■■□□□ 1.37
CDH3-205ENST00000566808 ATP6V1AP38606 617 aa23.63■■□□□ 1.37
CDH3-205ENST00000566808 NLGN1Q8N2Q7 840 aa23.63■■□□□ 1.37
CDH3-205ENST00000566808 CCDC87Q9NVE4 849 aa23.63■■□□□ 1.37
CDH3-205ENST00000566808 KDRP35968 1356 aa23.63■■□□□ 1.37
CDH3-205ENST00000566808 C9orf131Q5VYM1 1079 aa23.62■■□□□ 1.37
CDH3-205ENST00000566808 SPG7Q9UQ90 795 aa23.62■■□□□ 1.37
CDH3-205ENST00000566808 SBF1O95248 1867 aa23.62■■□□□ 1.37
CDH3-205ENST00000566808 SLC24A1O60721 1099 aa23.61■■□□□ 1.37
CDH3-205ENST00000566808 DPEP1P16444 411 aa23.61■■□□□ 1.37
CDH3-205ENST00000566808 TMF1P82094 1093 aa23.61■■□□□ 1.37
CDH3-205ENST00000566808 ASAP1Q9ULH1 1129 aa23.61■■□□□ 1.37
CDH3-205ENST00000566808 RTCBQ9Y3I0 505 aaKnown RBP23.6■■□□□ 1.37
CDH3-205ENST00000566808 ADRA2BP18089 450 aa23.59■■□□□ 1.37
CDH3-205ENST00000566808 TRAPPC3LQ5T215 181 aa23.58■■□□□ 1.37
CDH3-205ENST00000566808 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.58■■□□□ 1.37
CDH3-205ENST00000566808 TONSLQ96HA7 1378 aa23.56■■□□□ 1.36
CDH3-205ENST00000566808 PARP3Q9Y6F1 533 aa23.56■■□□□ 1.36
CDH3-205ENST00000566808 MYH14Q7Z406 1995 aaKnown RBP23.55■■□□□ 1.36
CDH3-205ENST00000566808 ST20-MTHFSA0A0A6YYL1 179 aa23.55■■□□□ 1.36
CDH3-205ENST00000566808 SMC1BQ8NDV3 1235 aa23.55■■□□□ 1.36
CDH3-205ENST00000566808 DCAF5Q96JK2 942 aa23.55■■□□□ 1.36
CDH3-205ENST00000566808 ATG3Q9NT62 314 aa23.55■■□□□ 1.36
CDH3-205ENST00000566808 CNTNAP4Q9C0A0 1308 aa23.55■■□□□ 1.36
CDH3-205ENST00000566808 GYS1P13807 737 aa23.54■■□□□ 1.36
CDH3-205ENST00000566808 RNF181Q9P0P0 153 aa23.54■■□□□ 1.36
CDH3-205ENST00000566808 KCNA3P22001 575 aa23.53■■□□□ 1.36
CDH3-205ENST00000566808 IFNL2Q8IZJ0 200 aa23.53■■□□□ 1.36
CDH3-205ENST00000566808 PIM2Q9P1W9 311 aa23.53■■□□□ 1.36
CDH3-205ENST00000566808 PHKG2P15735 406 aa23.52■■□□□ 1.36
CDH3-205ENST00000566808 RC3H1Q5TC82 1133 aaKnown RBP23.52■■□□□ 1.36
CDH3-205ENST00000566808 ARHGEF1Q92888 912 aaKnown RBP23.52■■□□□ 1.36
CDH3-205ENST00000566808 EMILIN1Q9Y6C2 1016 aa23.52■■□□□ 1.36
CDH3-205ENST00000566808 RFC4P35249 363 aa23.51■■□□□ 1.35
CDH3-205ENST00000566808 DALRD3Q5D0E6 543 aaKnown RBP23.51■■□□□ 1.35
CDH3-205ENST00000566808 ZC3H4Q9UPT8 1303 aaKnown RBP23.51■■□□□ 1.35
CDH3-205ENST00000566808 RRAGCQ9HB90 399 aa23.5■■□□□ 1.35
CDH3-205ENST00000566808 TIAM2Q8IVF5 1701 aa23.5■■□□□ 1.35
CDH3-205ENST00000566808 RPS6KA4O75676 772 aa23.48■■□□□ 1.35
CDH3-205ENST00000566808 HSPA1AP0DMV8 641 aaKnown RBP23.48■■□□□ 1.35
CDH3-205ENST00000566808 HSPA1BP0DMV9 641 aaKnown RBP23.48■■□□□ 1.35
CDH3-205ENST00000566808 SLC4A9Q96Q91 983 aa23.48■■□□□ 1.35
CDH3-205ENST00000566808 KDM6AO15550 1401 aaPredicted RBP23.47■■□□□ 1.35
CDH3-205ENST00000566808 DLEC1Q9Y238 1755 aa23.47■■□□□ 1.35
CDH3-205ENST00000566808 WASHC2AQ641Q2 1341 aa23.46■■□□□ 1.35
CDH3-205ENST00000566808 EYA1Q99502 592 aa23.46■■□□□ 1.35
CDH3-205ENST00000566808 RBM42Q9BTD8 480 aaKnown RBP23.46■■□□□ 1.35
CDH3-205ENST00000566808 TJP1Q07157 1748 aa23.45■■□□□ 1.34
CDH3-205ENST00000566808 PPM1GO15355 546 aaPredicted RBP23.44■■□□□ 1.34
CDH3-205ENST00000566808 ERVV-2B6SEH9 535 aa23.43■■□□□ 1.34
CDH3-205ENST00000566808 ADAMTS7Q9UKP4 1686 aa23.43■■□□□ 1.34
CDH3-205ENST00000566808 CCDC88AQ3V6T2 1871 aa23.42■■□□□ 1.34
CDH3-205ENST00000566808 USP42Q9H9J4 1324 aaKnown RBP23.41■■□□□ 1.34
CDH3-205ENST00000566808 DDR1Q08345 913 aa23.41■■□□□ 1.34
CDH3-205ENST00000566808 AFDNP55196 1824 aaKnown RBP23.4■■□□□ 1.34
CDH3-205ENST00000566808 HSP90AB1P08238 724 aaKnown RBP23.39■■□□□ 1.33
CDH3-205ENST00000566808 VEGFAP15692 232 aaPredicted RBP23.39■■□□□ 1.33
CDH3-205ENST00000566808 CHRNA5P30532 468 aa23.39■■□□□ 1.33
CDH3-205ENST00000566808 NRXN2Q9P2S2 1712 aa23.39■■□□□ 1.33
CDH3-205ENST00000566808 FKBP8Q14318 412 aa23.38■■□□□ 1.33
CDH3-205ENST00000566808 CDCA8Q53HL2 280 aa23.38■■□□□ 1.33
CDH3-205ENST00000566808 SRP68Q9UHB9 627 aaKnown RBP23.38■■□□□ 1.33
CDH3-205ENST00000566808 GLTPD2A6NH11 291 aa23.37■■□□□ 1.33
CDH3-205ENST00000566808 CRKLP46109 303 aaKnown RBP23.37■■□□□ 1.33
CDH3-205ENST00000566808 RASSF7Q02833 373 aa23.37■■□□□ 1.33
CDH3-205ENST00000566808 LMNB1P20700 586 aa23.36■■□□□ 1.33
CDH3-205ENST00000566808 CARD14Q9BXL6 1004 aa23.36■■□□□ 1.33
CDH3-205ENST00000566808 POLRMTO00411 1230 aaKnown RBP23.35■■□□□ 1.33
CDH3-205ENST00000566808 DICER1Q9UPY3 1922 aaKnown RBP23.33■■□□□ 1.33
CDH3-205ENST00000566808 CABP4P57796 275 aa23.32■■□□□ 1.32
CDH3-205ENST00000566808 EIF4A2Q14240 407 aaKnown RBP23.32■■□□□ 1.32
CDH3-205ENST00000566808 PTCD1O75127 700 aaKnown RBP23.31■■□□□ 1.32
CDH3-205ENST00000566808 POLKQ9UBT6 870 aa23.31■■□□□ 1.32
CDH3-205ENST00000566808 SCN11AQ9UI33 1791 aa23.31■■□□□ 1.32
CDH3-205ENST00000566808 TM4SF1P30408 202 aa23.3■■□□□ 1.32
CDH3-205ENST00000566808 ZNF530Q6P9A1 599 aaPredicted RBP23.29■■□□□ 1.32
CDH3-205ENST00000566808 PLEKHO1Q53GL0 409 aaPredicted RBP23.28■■□□□ 1.32
CDH3-205ENST00000566808 AMOTQ4VCS5 1084 aa23.27■■□□□ 1.32
CDH3-205ENST00000566808 CREBZFQ9NS37 354 aa23.27■■□□□ 1.32
CDH3-205ENST00000566808 FER1L6Q2WGJ9 1857 aa23.26■■□□□ 1.31
CDH3-205ENST00000566808 ZPR1O75312 459 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms