RNA–Protein interactions for RNA: ENST00000566347.5

CLN6-207, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best) BASIC

Gene CLN6, Length 981 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-207ENST00000566347 LINC00116Q8NCU8 138 aa27.37■■□□□ 1.97
CLN6-207ENST00000566347 NPC1L1Q9UHC9 1359 aa27.36■■□□□ 1.97
CLN6-207ENST00000566347 KDM6AO15550 1401 aaPredicted RBP27.36■■□□□ 1.97
CLN6-207ENST00000566347 MSL1Q68DK7 614 aa27.36■■□□□ 1.97
CLN6-207ENST00000566347 SSFA2P28290 1259 aa27.35■■□□□ 1.97
CLN6-207ENST00000566347 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.34■■□□□ 1.97
CLN6-207ENST00000566347 CABP4P57796 275 aa27.34■■□□□ 1.97
CLN6-207ENST00000566347 ITPK1Q13572 414 aa27.34■■□□□ 1.97
CLN6-207ENST00000566347 ZNF831Q5JPB2 1677 aa27.33■■□□□ 1.97
CLN6-207ENST00000566347 PHF14O94880 888 aa27.33■■□□□ 1.97
CLN6-207ENST00000566347 UTRNP46939 3433 aa27.32■■□□□ 1.96
CLN6-207ENST00000566347 GPR162Q16538 588 aa27.32■■□□□ 1.96
CLN6-207ENST00000566347 AMIGO3Q86WK7 504 aa27.32■■□□□ 1.96
CLN6-207ENST00000566347 CHD4Q14839 1912 aa27.3■■□□□ 1.96
CLN6-207ENST00000566347 GNPATO15228 680 aa27.3■■□□□ 1.96
CLN6-207ENST00000566347 DIAPH1O60610 1272 aaKnown RBP27.3■■□□□ 1.96
CLN6-207ENST00000566347 NLGN2Q8NFZ4 835 aa27.29■■□□□ 1.96
CLN6-207ENST00000566347 RBM42Q9BTD8 480 aaKnown RBP27.29■■□□□ 1.96
CLN6-207ENST00000566347 AKAP4Q5JQC9 854 aa27.28■■□□□ 1.96
CLN6-207ENST00000566347 SCN11AQ9UI33 1791 aa27.27■■□□□ 1.96
CLN6-207ENST00000566347 HMOX1P09601 288 aa27.26■■□□□ 1.95
CLN6-207ENST00000566347 SMIM5Q71RC9 77 aa27.26■■□□□ 1.95
CLN6-207ENST00000566347 NFATC2IPQ8NCF5 419 aa27.26■■□□□ 1.95
CLN6-207ENST00000566347 SLC4A9Q96Q91 983 aa27.26■■□□□ 1.95
CLN6-207ENST00000566347 CD2APQ9Y5K6 639 aa27.26■■□□□ 1.95
CLN6-207ENST00000566347 RC3H1Q5TC82 1133 aaKnown RBP27.25■■□□□ 1.95
CLN6-207ENST00000566347 COL5A3P25940 1745 aaPredicted RBP27.24■■□□□ 1.95
CLN6-207ENST00000566347 PELP1Q8IZL8 1130 aaKnown RBP27.24■■□□□ 1.95
CLN6-207ENST00000566347 RTCBQ9Y3I0 505 aaKnown RBP27.24■■□□□ 1.95
CLN6-207ENST00000566347 CNTNAP4Q9C0A0 1308 aa27.23■■□□□ 1.95
CLN6-207ENST00000566347 CNGB1Q14028 1251 aaPredicted RBP27.22■■□□□ 1.95
CLN6-207ENST00000566347 COL3A1P02461 1466 aaPredicted RBP27.21■■□□□ 1.95
CLN6-207ENST00000566347 ADRA2BP18089 450 aa27.21■■□□□ 1.95
CLN6-207ENST00000566347 TRAPPC3LQ5T215 181 aa27.21■■□□□ 1.95
CLN6-207ENST00000566347 GOLGB1Q14789 3259 aaKnown RBP27.21■■□□□ 1.95
CLN6-207ENST00000566347 PTCD1O75127 700 aaKnown RBP27.2■■□□□ 1.94
CLN6-207ENST00000566347 SLC52A2Q9HAB3 445 aa27.19■■□□□ 1.94
CLN6-207ENST00000566347 GRIN3BO60391 1043 aa27.18■■□□□ 1.94
CLN6-207ENST00000566347 MRC1P22897 1456 aa27.18■■□□□ 1.94
CLN6-207ENST00000566347 CICQ96RK0 1608 aaPredicted RBP27.17■■□□□ 1.94
CLN6-207ENST00000566347 RNMTO43148 476 aaKnown RBP27.17■■□□□ 1.94
CLN6-207ENST00000566347 RPS6KA4O75676 772 aa27.17■■□□□ 1.94
CLN6-207ENST00000566347 MTHFSDQ2M296 383 aaKnown RBP27.17■■□□□ 1.94
CLN6-207ENST00000566347 VIRMAQ69YN4 1812 aaKnown RBP27.16■■□□□ 1.94
CLN6-207ENST00000566347 U2SURPO15042 1029 aaKnown RBP27.16■■□□□ 1.94
CLN6-207ENST00000566347 ZNF784Q8NCA9 323 aaPredicted RBP27.16■■□□□ 1.94
CLN6-207ENST00000566347 LGR6Q9HBX8 967 aa27.16■■□□□ 1.94
CLN6-207ENST00000566347 MYH14Q7Z406 1995 aaKnown RBP27.15■■□□□ 1.94
CLN6-207ENST00000566347 ADAMTS7Q9UKP4 1686 aa27.14■■□□□ 1.94
CLN6-207ENST00000566347 YBX3P16989 372 aaKnown RBP eCLIP27.14■■□□□ 1.941e-7■■□□□ 13.8
CLN6-207ENST00000566347 NLGN1Q8N2Q7 840 aa27.14■■□□□ 1.94
CLN6-207ENST00000566347 ARHGEF1Q92888 912 aaKnown RBP27.14■■□□□ 1.94
CLN6-207ENST00000566347 CFAP53Q96M91 514 aa27.14■■□□□ 1.94
CLN6-207ENST00000566347 TJP1Q07157 1748 aa27.13■■□□□ 1.93
CLN6-207ENST00000566347 RFC4P35249 363 aa27.13■■□□□ 1.93
CLN6-207ENST00000566347 MMP10P09238 476 aa27.12■■□□□ 1.93
CLN6-207ENST00000566347 CRKLP46109 303 aaKnown RBP27.12■■□□□ 1.93
CLN6-207ENST00000566347 GAS2L2Q8NHY3 880 aa27.1■■□□□ 1.93
CLN6-207ENST00000566347 C4AP0C0L4 1744 aa27.09■■□□□ 1.93
CLN6-207ENST00000566347 GYS1P13807 737 aa27.08■■□□□ 1.93
CLN6-207ENST00000566347 SLC39A6Q13433 755 aa27.07■■□□□ 1.92
CLN6-207ENST00000566347 NUDCQ9Y266 331 aa27.06■■□□□ 1.92
CLN6-207ENST00000566347 KCPQ6ZWJ8 1503 aa27.06■■□□□ 1.92
CLN6-207ENST00000566347 KIF13BQ9NQT8 1826 aa27.05■■□□□ 1.92
CLN6-207ENST00000566347 GNAT3A8MTJ3 354 aa27.05■■□□□ 1.92
CLN6-207ENST00000566347 PPP2R1AP30153 589 aa27.05■■□□□ 1.92
CLN6-207ENST00000566347 INTS5Q6P9B9 1019 aaKnown RBP27.05■■□□□ 1.92
CLN6-207ENST00000566347 DNAJC10Q8IXB1 793 aa27.05■■□□□ 1.92
CLN6-207ENST00000566347 VSIG10Q8N0Z9 540 aa27.04■■□□□ 1.92
CLN6-207ENST00000566347 CCDC87Q9NVE4 849 aa27.04■■□□□ 1.92
CLN6-207ENST00000566347 USP42Q9H9J4 1324 aaKnown RBP27.03■■□□□ 1.92
CLN6-207ENST00000566347 PARP3Q9Y6F1 533 aa27.03■■□□□ 1.92
CLN6-207ENST00000566347 TEFQ10587 303 aa27.02■■□□□ 1.92
CLN6-207ENST00000566347 UBR2Q8IWV8 1755 aa27.02■■□□□ 1.92
CLN6-207ENST00000566347 C10orf71Q711Q0 1435 aa27.01■■□□□ 1.91
CLN6-207ENST00000566347 CYP19A1P11511 503 aaPredicted RBP27.01■■□□□ 1.91
CLN6-207ENST00000566347 PRKAR2BP31323 418 aa27.01■■□□□ 1.91
CLN6-207ENST00000566347 TGFB2P61812 414 aa27.01■■□□□ 1.91
CLN6-207ENST00000566347 TTC5Q8N0Z6 440 aa27.01■■□□□ 1.91
CLN6-207ENST00000566347 RSPH6AQ9H0K4 717 aa27.01■■□□□ 1.91
CLN6-207ENST00000566347 IL17REQ8NFR9 667 aa27■■□□□ 1.91
CLN6-207ENST00000566347 SRP68Q9UHB9 627 aaKnown RBP27■■□□□ 1.91
CLN6-207ENST00000566347 SOS1Q07889 1333 aaPredicted RBP26.99■■□□□ 1.91
CLN6-207ENST00000566347 PXDNLA1KZ92 1463 aa26.99■■□□□ 1.91
CLN6-207ENST00000566347 U2AF1L5P0DN76 240 aaPredicted RBP26.98■■□□□ 1.91
CLN6-207ENST00000566347 U2AF1Q01081 240 aaKnown RBP eCLIP26.98■■□□□ 1.91
CLN6-207ENST00000566347 PHACTR3Q96KR7 559 aa26.98■■□□□ 1.91
CLN6-207ENST00000566347 SIPA1L3O60292 1781 aaPredicted RBP26.97■■□□□ 1.91
CLN6-207ENST00000566347 ZPR1O75312 459 aa26.97■■□□□ 1.91
CLN6-207ENST00000566347 FKBP8Q14318 412 aa26.97■■□□□ 1.91
CLN6-207ENST00000566347 KIAA1551Q9HCM1 1747 aa26.96■■□□□ 1.91
CLN6-207ENST00000566347 WWC3Q9ULE0 1092 aa26.96■■□□□ 1.91
CLN6-207ENST00000566347 CEMIPQ8WUJ3 1361 aa26.96■■□□□ 1.91
CLN6-207ENST00000566347 FCHSD2O94868 740 aa26.95■■□□□ 1.9
CLN6-207ENST00000566347 STARD3NLO95772 234 aa26.95■■□□□ 1.9
CLN6-207ENST00000566347 ZNF790Q6PG37 636 aa26.95■■□□□ 1.9
CLN6-207ENST00000566347 COL15A1P39059 1388 aa26.95■■□□□ 1.9
CLN6-207ENST00000566347 N4BP2Q86UW6 1770 aaPredicted RBP26.94■■□□□ 1.9
CLN6-207ENST00000566347 ZBTB1Q9Y2K1 713 aa26.94■■□□□ 1.9
CLN6-207ENST00000566347 TEX13AQ9BXU3 409 aaPredicted RBP26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms