RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ERVV-2B6SEH9 535 aa14.71□□□□□ -0.05
VPS39-208ENST00000564994 HSP90AB1P08238 724 aaKnown RBP14.71□□□□□ -0.05
VPS39-208ENST00000564994 POLD1P28340 1107 aa14.71□□□□□ -0.05
VPS39-208ENST00000564994 CNGB1Q14028 1251 aaPredicted RBP14.71□□□□□ -0.05
VPS39-208ENST00000564994 COL5A3P25940 1745 aaPredicted RBP14.7□□□□□ -0.06
VPS39-208ENST00000564994 DCAF8L1A6NGE4 600 aa14.7□□□□□ -0.06
VPS39-208ENST00000564994 MSL1Q68DK7 614 aa14.7□□□□□ -0.06
VPS39-208ENST00000564994 AK7Q96M32 723 aa14.7□□□□□ -0.06
VPS39-208ENST00000564994 SLC4A9Q96Q91 983 aa14.7□□□□□ -0.06
VPS39-208ENST00000564994 COL3A1P02461 1466 aaPredicted RBP14.69□□□□□ -0.06
VPS39-208ENST00000564994 HMOX1P09601 288 aa14.69□□□□□ -0.06
VPS39-208ENST00000564994 YY1P25490 414 aa14.69□□□□□ -0.06
VPS39-208ENST00000564994 HMGB2P26583 209 aaKnown RBP14.69□□□□□ -0.06
VPS39-208ENST00000564994 ATP6V1AP38606 617 aa14.69□□□□□ -0.06
VPS39-208ENST00000564994 FLAD1Q8NFF5 587 aa14.69□□□□□ -0.06
VPS39-208ENST00000564994 CHD4Q14839 1912 aa14.68□□□□□ -0.06
VPS39-208ENST00000564994 MYH14Q7Z406 1995 aaKnown RBP14.68□□□□□ -0.06
VPS39-208ENST00000564994 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.68□□□□□ -0.06
VPS39-208ENST00000564994 PHF14O94880 888 aa14.68□□□□□ -0.06
VPS39-208ENST00000564994 C1orf141Q5JVX7 400 aa14.68□□□□□ -0.06
VPS39-208ENST00000564994 KLHL34Q8N239 644 aa14.68□□□□□ -0.06
VPS39-208ENST00000564994 DIAPH1O60610 1272 aaKnown RBP14.67□□□□□ -0.06
VPS39-208ENST00000564994 CABP4P57796 275 aa14.67□□□□□ -0.06
VPS39-208ENST00000564994 NLGN2Q8NFZ4 835 aa14.67□□□□□ -0.06
VPS39-208ENST00000564994 ADAMTS7Q9UKP4 1686 aa14.66□□□□□ -0.06
VPS39-208ENST00000564994 NFATC2IPQ8NCF5 419 aa14.66□□□□□ -0.06
VPS39-208ENST00000564994 RBM42Q9BTD8 480 aaKnown RBP14.66□□□□□ -0.06
VPS39-208ENST00000564994 GNPATO15228 680 aa14.65□□□□□ -0.06
VPS39-208ENST00000564994 SSFA2P28290 1259 aa14.65□□□□□ -0.06
VPS39-208ENST00000564994 AKAP4Q5JQC9 854 aa14.65□□□□□ -0.06
VPS39-208ENST00000564994 TJP1Q07157 1748 aa14.65□□□□□ -0.06
VPS39-208ENST00000564994 LGR6Q9HBX8 967 aa14.64□□□□□ -0.07
VPS39-208ENST00000564994 MRC1P22897 1456 aa14.63□□□□□ -0.07
VPS39-208ENST00000564994 CICQ96RK0 1608 aaPredicted RBP14.63□□□□□ -0.07
VPS39-208ENST00000564994 MTHFSDQ2M296 383 aaKnown RBP14.63□□□□□ -0.07
VPS39-208ENST00000564994 C4AP0C0L4 1744 aa14.63□□□□□ -0.07
VPS39-208ENST00000564994 PTCD1O75127 700 aaKnown RBP14.62□□□□□ -0.07
VPS39-208ENST00000564994 CNTNAP4Q9C0A0 1308 aa14.62□□□□□ -0.07
VPS39-208ENST00000564994 U2SURPO15042 1029 aaKnown RBP14.61□□□□□ -0.07
VPS39-208ENST00000564994 RNMTO43148 476 aaKnown RBP14.61□□□□□ -0.07
VPS39-208ENST00000564994 GPR162Q16538 588 aa14.61□□□□□ -0.07
VPS39-208ENST00000564994 RC3H1Q5TC82 1133 aaKnown RBP14.61□□□□□ -0.07
VPS39-208ENST00000564994 SLC52A2Q9HAB3 445 aa14.61□□□□□ -0.07
VPS39-208ENST00000564994 RTCBQ9Y3I0 505 aaKnown RBP14.6□□□□□ -0.07
VPS39-208ENST00000564994 PPP2R1AP30153 589 aa14.59□□□□□ -0.07
VPS39-208ENST00000564994 TRAPPC3LQ5T215 181 aa14.59□□□□□ -0.07
VPS39-208ENST00000564994 PELP1Q8IZL8 1130 aaKnown RBP14.59□□□□□ -0.07
VPS39-208ENST00000564994 CD2APQ9Y5K6 639 aa14.59□□□□□ -0.07
VPS39-208ENST00000564994 SIPA1L3O60292 1781 aaPredicted RBP14.59□□□□□ -0.07
VPS39-208ENST00000564994 UBR2Q8IWV8 1755 aa14.59□□□□□ -0.07
VPS39-208ENST00000564994 KCPQ6ZWJ8 1503 aa14.58□□□□□ -0.08
VPS39-208ENST00000564994 KIF13BQ9NQT8 1826 aa14.58□□□□□ -0.08
VPS39-208ENST00000564994 RPS6KA4O75676 772 aa14.58□□□□□ -0.08
VPS39-208ENST00000564994 YBX3P16989 372 aaKnown RBP eCLIP14.58□□□□□ -0.08
VPS39-208ENST00000564994 SLC39A6Q13433 755 aa14.58□□□□□ -0.08
VPS39-208ENST00000564994 ARHGEF1Q92888 912 aaKnown RBP14.58□□□□□ -0.08
VPS39-208ENST00000564994 ADRA2BP18089 450 aa14.57□□□□□ -0.08
VPS39-208ENST00000564994 CRKLP46109 303 aaKnown RBP14.57□□□□□ -0.08
VPS39-208ENST00000564994 KIAA1551Q9HCM1 1747 aa14.56□□□□□ -0.08
VPS39-208ENST00000564994 INTS5Q6P9B9 1019 aaKnown RBP14.56□□□□□ -0.08
VPS39-208ENST00000564994 DNAJC10Q8IXB1 793 aa14.56□□□□□ -0.08
VPS39-208ENST00000564994 MMP10P09238 476 aa14.55□□□□□ -0.08
VPS39-208ENST00000564994 GYS1P13807 737 aa14.55□□□□□ -0.08
VPS39-208ENST00000564994 ZNF784Q8NCA9 323 aaPredicted RBP14.55□□□□□ -0.08
VPS39-208ENST00000564994 IL17REQ8NFR9 667 aa14.55□□□□□ -0.08
VPS39-208ENST00000564994 PHACTR3Q96KR7 559 aa14.55□□□□□ -0.08
VPS39-208ENST00000564994 CFAP53Q96M91 514 aa14.55□□□□□ -0.08
VPS39-208ENST00000564994 RSPH6AQ9H0K4 717 aa14.55□□□□□ -0.08
VPS39-208ENST00000564994 PRKAR2BP31323 418 aa14.54□□□□□ -0.08
VPS39-208ENST00000564994 RFC4P35249 363 aa14.54□□□□□ -0.08
VPS39-208ENST00000564994 GAS2L2Q8NHY3 880 aa14.54□□□□□ -0.08
VPS39-208ENST00000564994 N4BP2Q86UW6 1770 aaPredicted RBP14.54□□□□□ -0.08
VPS39-208ENST00000564994 GNAT3A8MTJ3 354 aa14.53□□□□□ -0.08
VPS39-208ENST00000564994 NLGN1Q8N2Q7 840 aa14.53□□□□□ -0.08
VPS39-208ENST00000564994 SRP68Q9UHB9 627 aaKnown RBP14.53□□□□□ -0.08
VPS39-208ENST00000564994 CYP19A1P11511 503 aaPredicted RBP14.52□□□□□ -0.09
VPS39-208ENST00000564994 CCDC87Q9NVE4 849 aa14.52□□□□□ -0.09
VPS39-208ENST00000564994 WWC3Q9ULE0 1092 aa14.52□□□□□ -0.09
VPS39-208ENST00000564994 CEMIPQ8WUJ3 1361 aa14.51□□□□□ -0.09
VPS39-208ENST00000564994 USP42Q9H9J4 1324 aaKnown RBP14.51□□□□□ -0.09
VPS39-208ENST00000564994 GRIN3BO60391 1043 aa14.51□□□□□ -0.09
VPS39-208ENST00000564994 U2AF1L5P0DN76 240 aaPredicted RBP14.51□□□□□ -0.09
VPS39-208ENST00000564994 U2AF1Q01081 240 aaKnown RBP eCLIP14.51□□□□□ -0.09
VPS39-208ENST00000564994 NUDCQ9Y266 331 aa14.51□□□□□ -0.09
VPS39-208ENST00000564994 PXDNLA1KZ92 1463 aa14.5□□□□□ -0.09
VPS39-208ENST00000564994 BRCA1P38398 1863 aaKnown RBP14.5□□□□□ -0.09
VPS39-208ENST00000564994 C10orf71Q711Q0 1435 aa14.5□□□□□ -0.09
VPS39-208ENST00000564994 SOS1Q07889 1333 aaPredicted RBP14.5□□□□□ -0.09
VPS39-208ENST00000564994 TEFQ10587 303 aa14.5□□□□□ -0.09
VPS39-208ENST00000564994 FKBP8Q14318 412 aa14.5□□□□□ -0.09
VPS39-208ENST00000564994 VSIG10Q8N0Z9 540 aa14.5□□□□□ -0.09
VPS39-208ENST00000564994 ZBTB1Q9Y2K1 713 aa14.5□□□□□ -0.09
VPS39-208ENST00000564994 DLG5Q8TDM6 1919 aa14.49□□□□□ -0.09
VPS39-208ENST00000564994 ZNF496Q96IT1 587 aaPredicted RBP14.49□□□□□ -0.09
VPS39-208ENST00000564994 AFDNP55196 1824 aaKnown RBP14.48□□□□□ -0.09
VPS39-208ENST00000564994 FCHSD2O94868 740 aa14.48□□□□□ -0.09
VPS39-208ENST00000564994 DDR1Q08345 913 aa14.48□□□□□ -0.09
VPS39-208ENST00000564994 ZNF790Q6PG37 636 aa14.48□□□□□ -0.09
VPS39-208ENST00000564994 TTC5Q8N0Z6 440 aa14.48□□□□□ -0.09
VPS39-208ENST00000564994 PARP3Q9Y6F1 533 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms