RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 LINC00116Q8NCU8 138 aa23.96■■□□□ 1.43
NME3-205ENST00000563854 ERVV-2B6SEH9 535 aa23.95■■□□□ 1.42
NME3-205ENST00000563854 HMOX1P09601 288 aa23.95■■□□□ 1.42
NME3-205ENST00000563854 CABP4P57796 275 aa23.95■■□□□ 1.42
NME3-205ENST00000563854 FLAD1Q8NFF5 587 aa23.95■■□□□ 1.42
NME3-205ENST00000563854 KDRP35968 1356 aa23.94■■□□□ 1.42
NME3-205ENST00000563854 MAP3K5Q99683 1374 aa23.94■■□□□ 1.42
NME3-205ENST00000563854 ITPK1Q13572 414 aa23.94■■□□□ 1.42
NME3-205ENST00000563854 AMIGO3Q86WK7 504 aa23.94■■□□□ 1.42
NME3-205ENST00000563854 RBM42Q9BTD8 480 aaKnown RBP23.94■■□□□ 1.42
NME3-205ENST00000563854 PELP1Q8IZL8 1130 aaKnown RBP23.92■■□□□ 1.42
NME3-205ENST00000563854 UBR3Q6ZT12 1888 aa23.92■■□□□ 1.42
NME3-205ENST00000563854 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.91■■□□□ 1.42
NME3-205ENST00000563854 GNPATO15228 680 aa23.91■■□□□ 1.42
NME3-205ENST00000563854 DIAPH1O60610 1272 aaKnown RBP23.91■■□□□ 1.42
NME3-205ENST00000563854 NLGN2Q8NFZ4 835 aa23.89■■□□□ 1.41
NME3-205ENST00000563854 NPC1L1Q9UHC9 1359 aa23.89■■□□□ 1.41
NME3-205ENST00000563854 GPR162Q16538 588 aa23.88■■□□□ 1.41
NME3-205ENST00000563854 SSFA2P28290 1259 aa23.87■■□□□ 1.41
NME3-205ENST00000563854 U2SURPO15042 1029 aaKnown RBP23.86■■□□□ 1.41
NME3-205ENST00000563854 PTCD1O75127 700 aaKnown RBP23.86■■□□□ 1.41
NME3-205ENST00000563854 AKAP4Q5JQC9 854 aa23.86■■□□□ 1.41
NME3-205ENST00000563854 NFATC2IPQ8NCF5 419 aa23.86■■□□□ 1.41
NME3-205ENST00000563854 SLC4A9Q96Q91 983 aa23.86■■□□□ 1.41
NME3-205ENST00000563854 COL3A1P02461 1466 aaPredicted RBP23.85■■□□□ 1.41
NME3-205ENST00000563854 SCN11AQ9UI33 1791 aa23.85■■□□□ 1.41
NME3-205ENST00000563854 RTCBQ9Y3I0 505 aaKnown RBP23.82■■□□□ 1.4
NME3-205ENST00000563854 ZNF831Q5JPB2 1677 aa23.82■■□□□ 1.4
NME3-205ENST00000563854 COL5A3P25940 1745 aaPredicted RBP23.81■■□□□ 1.4
NME3-205ENST00000563854 MTHFSDQ2M296 383 aaKnown RBP23.81■■□□□ 1.4
NME3-205ENST00000563854 LGR6Q9HBX8 967 aa23.81■■□□□ 1.4
NME3-205ENST00000563854 RNMTO43148 476 aaKnown RBP23.79■■□□□ 1.4
NME3-205ENST00000563854 SLC52A2Q9HAB3 445 aa23.79■■□□□ 1.4
NME3-205ENST00000563854 CNTNAP4Q9C0A0 1308 aa23.79■■□□□ 1.4
NME3-205ENST00000563854 TRAPPC3LQ5T215 181 aa23.78■■□□□ 1.4
NME3-205ENST00000563854 CFAP53Q96M91 514 aa23.78■■□□□ 1.4
NME3-205ENST00000563854 VIRMAQ69YN4 1812 aaKnown RBP23.77■■□□□ 1.4
NME3-205ENST00000563854 TJP1Q07157 1748 aa23.76■■□□□ 1.39
NME3-205ENST00000563854 MRC1P22897 1456 aa23.76■■□□□ 1.39
NME3-205ENST00000563854 RC3H1Q5TC82 1133 aaKnown RBP23.76■■□□□ 1.39
NME3-205ENST00000563854 CD2APQ9Y5K6 639 aa23.76■■□□□ 1.39
NME3-205ENST00000563854 UTRNP46939 3433 aa23.75■■□□□ 1.39
NME3-205ENST00000563854 CRKLP46109 303 aaKnown RBP23.75■■□□□ 1.39
NME3-205ENST00000563854 SLC39A6Q13433 755 aa23.75■■□□□ 1.39
NME3-205ENST00000563854 CHD4Q14839 1912 aa23.74■■□□□ 1.39
NME3-205ENST00000563854 RPS6KA4O75676 772 aa23.74■■□□□ 1.39
NME3-205ENST00000563854 MMP10P09238 476 aa23.74■■□□□ 1.39
NME3-205ENST00000563854 RFC4P35249 363 aa23.74■■□□□ 1.39
NME3-205ENST00000563854 ARHGEF1Q92888 912 aaKnown RBP23.74■■□□□ 1.39
NME3-205ENST00000563854 YBX3P16989 372 aaKnown RBP eCLIP23.73■■□□□ 1.39
NME3-205ENST00000563854 WWC3Q9ULE0 1092 aa23.73■■□□□ 1.39
NME3-205ENST00000563854 ADRA2BP18089 450 aa23.72■■□□□ 1.39
NME3-205ENST00000563854 PPP2R1AP30153 589 aa23.72■■□□□ 1.39
NME3-205ENST00000563854 C4AP0C0L4 1744 aa23.72■■□□□ 1.39
NME3-205ENST00000563854 MYH14Q7Z406 1995 aaKnown RBP23.71■■□□□ 1.39
NME3-205ENST00000563854 ADAMTS7Q9UKP4 1686 aa23.71■■□□□ 1.39
NME3-205ENST00000563854 DNAJC10Q8IXB1 793 aa23.71■■□□□ 1.39
NME3-205ENST00000563854 GAS2L2Q8NHY3 880 aa23.71■■□□□ 1.39
NME3-205ENST00000563854 CICQ96RK0 1608 aaPredicted RBP23.7■■□□□ 1.39
NME3-205ENST00000563854 GOLGB1Q14789 3259 aaKnown RBP23.7■■□□□ 1.38
NME3-205ENST00000563854 PRKAR2BP31323 418 aa23.7■■□□□ 1.38
NME3-205ENST00000563854 ZNF784Q8NCA9 323 aaPredicted RBP23.7■■□□□ 1.38
NME3-205ENST00000563854 NUDCQ9Y266 331 aa23.7■■□□□ 1.38
NME3-205ENST00000563854 KCPQ6ZWJ8 1503 aa23.69■■□□□ 1.38
NME3-205ENST00000563854 GNAT3A8MTJ3 354 aa23.68■■□□□ 1.38
NME3-205ENST00000563854 GRIN3BO60391 1043 aa23.68■■□□□ 1.38
NME3-205ENST00000563854 U2AF1L5P0DN76 240 aaPredicted RBP23.68■■□□□ 1.38
NME3-205ENST00000563854 GYS1P13807 737 aa23.68■■□□□ 1.38
NME3-205ENST00000563854 U2AF1Q01081 240 aaKnown RBP eCLIP23.68■■□□□ 1.38
NME3-205ENST00000563854 NLGN1Q8N2Q7 840 aa23.68■■□□□ 1.38
NME3-205ENST00000563854 TEFQ10587 303 aa23.67■■□□□ 1.38
NME3-205ENST00000563854 TTC5Q8N0Z6 440 aa23.67■■□□□ 1.38
NME3-205ENST00000563854 RSPH6AQ9H0K4 717 aa23.67■■□□□ 1.38
NME3-205ENST00000563854 CCDC87Q9NVE4 849 aa23.67■■□□□ 1.38
NME3-205ENST00000563854 SRP68Q9UHB9 627 aaKnown RBP23.67■■□□□ 1.38
NME3-205ENST00000563854 INTS5Q6P9B9 1019 aaKnown RBP23.65■■□□□ 1.38
NME3-205ENST00000563854 PHACTR3Q96KR7 559 aa23.65■■□□□ 1.38
NME3-205ENST00000563854 IL17REQ8NFR9 667 aa23.64■■□□□ 1.37
NME3-205ENST00000563854 PARP3Q9Y6F1 533 aa23.64■■□□□ 1.37
NME3-205ENST00000563854 USP42Q9H9J4 1324 aaKnown RBP23.63■■□□□ 1.37
NME3-205ENST00000563854 CYP19A1P11511 503 aaPredicted RBP23.63■■□□□ 1.37
NME3-205ENST00000563854 UBR2Q8IWV8 1755 aa23.62■■□□□ 1.37
NME3-205ENST00000563854 ZBTB1Q9Y2K1 713 aa23.61■■□□□ 1.37
NME3-205ENST00000563854 SOS1Q07889 1333 aaPredicted RBP23.6■■□□□ 1.37
NME3-205ENST00000563854 C10orf71Q711Q0 1435 aa23.6■■□□□ 1.37
NME3-205ENST00000563854 FKBP8Q14318 412 aa23.6■■□□□ 1.37
NME3-205ENST00000563854 PXDNLA1KZ92 1463 aa23.6■■□□□ 1.37
NME3-205ENST00000563854 ZPR1O75312 459 aa23.59■■□□□ 1.37
NME3-205ENST00000563854 COL15A1P39059 1388 aa23.59■■□□□ 1.37
NME3-205ENST00000563854 SIPA1L3O60292 1781 aaPredicted RBP23.59■■□□□ 1.37
NME3-205ENST00000563854 N4BP2Q86UW6 1770 aaPredicted RBP23.58■■□□□ 1.37
NME3-205ENST00000563854 CANXP27824 592 aaKnown RBP23.58■■□□□ 1.37
NME3-205ENST00000563854 USPL1Q5W0Q7 1092 aa23.58■■□□□ 1.37
NME3-205ENST00000563854 ZNF790Q6PG37 636 aa23.58■■□□□ 1.37
NME3-205ENST00000563854 VSIG10Q8N0Z9 540 aa23.58■■□□□ 1.37
NME3-205ENST00000563854 ZNF496Q96IT1 587 aaPredicted RBP23.58■■□□□ 1.37
NME3-205ENST00000563854 KIF13BQ9NQT8 1826 aa23.58■■□□□ 1.37
NME3-205ENST00000563854 A0A0G2JLW4 131 aa23.57■■□□□ 1.36
NME3-205ENST00000563854 RTF1Q92541 710 aaKnown RBP23.57■■□□□ 1.36
NME3-205ENST00000563854 KIAA1551Q9HCM1 1747 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms