RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	UBR3	Q6ZT12	1888 aa		11.78	□□□□□ -0.52
CKLF-208	ENST00000563092	NSD3	Q9BZ95	1437 aa		11.78	□□□□□ -0.52
CKLF-208	ENST00000563092	CYP27B1	O15528	508 aa		11.78	□□□□□ -0.52
CKLF-208	ENST00000563092	NEUROD1	Q13562	356 aa		11.78	□□□□□ -0.52
CKLF-208	ENST00000563092	MAP2	P11137	1827 aa	Known RBP	11.78	□□□□□ -0.52
CKLF-208	ENST00000563092	FYB1	O15117	783 aa		11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	RRS1	Q15050	365 aa	Known RBP	11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	NKX1-1	Q15270	411 aa	Predicted RBP	11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	USHBP1	Q8N6Y0	703 aa		11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	RAPGEF4	Q8WZA2	1011 aa		11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	SMARCC1	Q92922	1105 aa	Predicted RBP	11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	PKD1L3	Q7Z443	1732 aa		11.77	□□□□□ -0.53
CKLF-208	ENST00000563092	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.76	□□□□□ -0.53
CKLF-208	ENST00000563092	TAT	P17735	454 aa	Predicted RBP	11.76	□□□□□ -0.53
CKLF-208	ENST00000563092	SSFA2	P28290	1259 aa		11.76	□□□□□ -0.53
CKLF-208	ENST00000563092	ZNF526	Q8TF50	670 aa	Predicted RBP	11.76	□□□□□ -0.53
CKLF-208	ENST00000563092	KIAA1551	Q9HCM1	1747 aa		11.76	□□□□□ -0.53
CKLF-208	ENST00000563092	SMG6	Q86US8	1419 aa	Known RBP	11.76	□□□□□ -0.53
CKLF-208	ENST00000563092	KIF13B	Q9NQT8	1826 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	APLP1	P51693	650 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	HSP90AB2P	Q58FF8	381 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	MPRIP	Q6WCQ1	1025 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	PIGB	Q92521	554 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	AK7	Q96M32	723 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	PXDNL	A1KZ92	1463 aa		11.75	□□□□□ -0.53
CKLF-208	ENST00000563092	ITGB4	P16144	1822 aa		11.74	□□□□□ -0.53
CKLF-208	ENST00000563092	SLC24A1	O60721	1099 aa		11.74	□□□□□ -0.53
CKLF-208	ENST00000563092	SMIM5	Q71RC9	77 aa		11.74	□□□□□ -0.53
CKLF-208	ENST00000563092	LINC00116	Q8NCU8	138 aa		11.74	□□□□□ -0.53
CKLF-208	ENST00000563092	FLT4	P35916	1363 aa		11.74	□□□□□ -0.53
CKLF-208	ENST00000563092	ST20-MTHFS	A0A0A6YYL1	179 aa		11.73	□□□□□ -0.53
CKLF-208	ENST00000563092	LOC102724428	A0A0B4J2F2	783 aa		11.73	□□□□□ -0.53
CKLF-208	ENST00000563092	TOMM70	O94826	608 aa		11.73	□□□□□ -0.53
CKLF-208	ENST00000563092	SIK1	P57059	783 aa		11.73	□□□□□ -0.53
CKLF-208	ENST00000563092	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.73	□□□□□ -0.53
CKLF-208	ENST00000563092	TONSL	Q96HA7	1378 aa		11.72	□□□□□ -0.53
CKLF-208	ENST00000563092	CD44	P16070	742 aa	Known RBP	11.72	□□□□□ -0.53
CKLF-208	ENST00000563092	ITPK1	Q13572	414 aa		11.72	□□□□□ -0.53
CKLF-208	ENST00000563092	GGNBP2	Q9H3C7	697 aa		11.72	□□□□□ -0.53
CKLF-208	ENST00000563092	C10orf71	Q711Q0	1435 aa		11.71	□□□□□ -0.53
CKLF-208	ENST00000563092	PHF14	O94880	888 aa		11.71	□□□□□ -0.53
CKLF-208	ENST00000563092	TGFB2	P61812	414 aa		11.71	□□□□□ -0.53
CKLF-208	ENST00000563092	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
CKLF-208	ENST00000563092	KDR	P35968	1356 aa		11.7	□□□□□ -0.54
CKLF-208	ENST00000563092	PLEKHG2	Q9H7P9	1386 aa		11.7	□□□□□ -0.54
CKLF-208	ENST00000563092	ANKRD26	Q9UPS8	1709 aa		11.7	□□□□□ -0.54
CKLF-208	ENST00000563092	ZNF831	Q5JPB2	1677 aa		11.7	□□□□□ -0.54
CKLF-208	ENST00000563092	MMP10	P09238	476 aa		11.69	□□□□□ -0.54
CKLF-208	ENST00000563092	JMY	Q8N9B5	988 aa		11.69	□□□□□ -0.54
CKLF-208	ENST00000563092	WWC3	Q9ULE0	1092 aa		11.69	□□□□□ -0.54
CKLF-208	ENST00000563092	ASAP1	Q9ULH1	1129 aa		11.69	□□□□□ -0.54
CKLF-208	ENST00000563092	GNPAT	O15228	680 aa		11.68	□□□□□ -0.54
CKLF-208	ENST00000563092	RBM46	Q8TBY0	533 aa	Known RBP	11.68	□□□□□ -0.54
CKLF-208	ENST00000563092	BRCA1	P38398	1863 aa	Known RBP	11.68	□□□□□ -0.54
CKLF-208	ENST00000563092	WASHC2A	Q641Q2	1341 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	WDR90	Q96KV7	1748 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	KCNA3	P22001	575 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	NLGN1	Q8N2Q7	840 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	SLC4A9	Q96Q91	983 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	CARD14	Q9BXL6	1004 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	NMRK2	Q9NPI5	230 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	ATG3	Q9NT62	314 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	SPG7	Q9UQ90	795 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	EMILIN1	Q9Y6C2	1016 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	KIF20B	Q96Q89	1820 aa		11.67	□□□□□ -0.54
CKLF-208	ENST00000563092	PCNT	O95613	3336 aa		11.66	□□□□□ -0.54
CKLF-208	ENST00000563092		A0A0G2JLW4	131 aa		11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	PHKG2	P15735	406 aa		11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	ATP6V1A	P38606	617 aa		11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	RC3H1	Q5TC82	1133 aa	Known RBP	11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	TMOD3	Q9NYL9	352 aa		11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	C4A	P0C0L4	1744 aa		11.66	□□□□□ -0.54
CKLF-208	ENST00000563092	GYS1	P13807	737 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	DPEP1	P16444	411 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	TMF1	P82094	1093 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	FSTL1	Q12841	308 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	KLRG1	Q96E93	195 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	EYA1	Q99502	592 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	BCS1L	Q9Y276	419 aa		11.65	□□□□□ -0.54
CKLF-208	ENST00000563092	CNTNAP4	Q9C0A0	1308 aa		11.64	□□□□□ -0.55
CKLF-208	ENST00000563092	COL5A3	P25940	1745 aa	Predicted RBP	11.64	□□□□□ -0.55
CKLF-208	ENST00000563092	TRAPPC3L	Q5T215	181 aa		11.64	□□□□□ -0.55
CKLF-208	ENST00000563092	IFNL2	Q8IZJ0	200 aa		11.64	□□□□□ -0.55
CKLF-208	ENST00000563092	ARHGEF1	Q92888	912 aa	Known RBP	11.64	□□□□□ -0.55
CKLF-208	ENST00000563092	ARFGEF1	Q9Y6D6	1849 aa		11.63	□□□□□ -0.55
CKLF-208	ENST00000563092	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.63	□□□□□ -0.55
CKLF-208	ENST00000563092	ARHGAP27	Q6ZUM4	889 aa		11.63	□□□□□ -0.55
CKLF-208	ENST00000563092	DCAF5	Q96JK2	942 aa		11.63	□□□□□ -0.55
CKLF-208	ENST00000563092	CCDC87	Q9NVE4	849 aa		11.63	□□□□□ -0.55
CKLF-208	ENST00000563092	RTCB	Q9Y3I0	505 aa	Known RBP	11.63	□□□□□ -0.55
CKLF-208	ENST00000563092	ERVV-2	B6SEH9	535 aa		11.62	□□□□□ -0.55
CKLF-208	ENST00000563092	RPS6KA4	O75676	772 aa		11.62	□□□□□ -0.55
CKLF-208	ENST00000563092	C9orf131	Q5VYM1	1079 aa		11.62	□□□□□ -0.55
CKLF-208	ENST00000563092	LHX8	Q68G74	356 aa		11.62	□□□□□ -0.55
CKLF-208	ENST00000563092	FCHSD2	O94868	740 aa		11.61	□□□□□ -0.55
CKLF-208	ENST00000563092	POLK	Q9UBT6	870 aa		11.61	□□□□□ -0.55
CKLF-208	ENST00000563092	KDM6A	O15550	1401 aa	Predicted RBP	11.6	□□□□□ -0.55
CKLF-208	ENST00000563092	HTRA3	P83110	453 aa		11.6	□□□□□ -0.55
CKLF-208	ENST00000563092	CDCA8	Q53HL2	280 aa		11.6	□□□□□ -0.55

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