RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 TWISTNBQ3B726 338 aaPredicted RBP17.96■□□□□ 0.47
CLK3-209ENST00000562670 GLI3P10071 1580 aa17.96■□□□□ 0.46
CLK3-209ENST00000562670 VAMP4O75379 141 aa17.95■□□□□ 0.46
CLK3-209ENST00000562670 HOXB7P09629 217 aa17.95■□□□□ 0.46
CLK3-209ENST00000562670 FBXO41Q8TF61 875 aa17.95■□□□□ 0.46
CLK3-209ENST00000562670 GTF3C3Q9Y5Q9 886 aa17.95■□□□□ 0.46
CLK3-209ENST00000562670 AFF2P51816 1311 aa17.95■□□□□ 0.46
CLK3-209ENST00000562670 HEG1Q9ULI3 1381 aa17.94■□□□□ 0.46
CLK3-209ENST00000562670 EXOC5O00471 708 aa17.93■□□□□ 0.46
CLK3-209ENST00000562670 C8orf58Q8NAV2 365 aa17.93■□□□□ 0.46
CLK3-209ENST00000562670 CHMP4AQ9BY43 222 aa17.93■□□□□ 0.46
CLK3-209ENST00000562670 UBR2Q8IWV8 1755 aa17.93■□□□□ 0.46
CLK3-209ENST00000562670 KIF16BQ96L93 1317 aa17.93■□□□□ 0.46
CLK3-209ENST00000562670 BTBD11A6QL63 1104 aa17.92■□□□□ 0.46
CLK3-209ENST00000562670 TSPYL6Q8N831 410 aa17.92■□□□□ 0.46
CLK3-209ENST00000562670 BCAR3O75815 825 aa17.91■□□□□ 0.46
CLK3-209ENST00000562670 DDB1Q16531 1140 aa17.91■□□□□ 0.46
CLK3-209ENST00000562670 SSH1Q8WYL5 1049 aa17.91■□□□□ 0.46
CLK3-209ENST00000562670 TRPC5Q9UL62 973 aaPredicted RBP17.91■□□□□ 0.46
CLK3-209ENST00000562670 EIF4A1P60842 406 aaKnown RBP17.9■□□□□ 0.46
CLK3-209ENST00000562670 SMC4Q9NTJ3 1288 aa17.9■□□□□ 0.46
CLK3-209ENST00000562670 MIS18AQ9NYP9 233 aa17.9■□□□□ 0.46
CLK3-209ENST00000562670 CCDC9Q9Y3X0 531 aaKnown RBP17.9■□□□□ 0.46
CLK3-209ENST00000562670 BCL9O00512 1426 aa17.89■□□□□ 0.46
CLK3-209ENST00000562670 PDE3AQ14432 1141 aa17.89■□□□□ 0.45
CLK3-209ENST00000562670 DDX54Q8TDD1 881 aaKnown RBP17.89■□□□□ 0.45
CLK3-209ENST00000562670 GJD4Q96KN9 370 aaPredicted RBP17.89■□□□□ 0.45
CLK3-209ENST00000562670 DOT1LQ8TEK3 1739 aa17.89■□□□□ 0.45
CLK3-209ENST00000562670 ONECUT3O60422 494 aaPredicted RBP17.88■□□□□ 0.45
CLK3-209ENST00000562670 CABP4P57796 275 aa17.88■□□□□ 0.45
CLK3-209ENST00000562670 FKBP8Q14318 412 aa17.88■□□□□ 0.45
CLK3-209ENST00000562670 ZNF790Q6PG37 636 aa17.88■□□□□ 0.45
CLK3-209ENST00000562670 CACNA1FO60840 1977 aa17.88■□□□□ 0.45
CLK3-209ENST00000562670 LAMB4A4D0S4 1761 aa17.87■□□□□ 0.45
CLK3-209ENST00000562670 ITGB4P16144 1822 aa17.87■□□□□ 0.45
CLK3-209ENST00000562670 KRT24Q2M2I5 525 aa17.87■□□□□ 0.45
CLK3-209ENST00000562670 NFATC2IPQ8NCF5 419 aa17.87■□□□□ 0.45
CLK3-209ENST00000562670 KCPQ6ZWJ8 1503 aa17.87■□□□□ 0.45
CLK3-209ENST00000562670 MS4A1P11836 297 aa17.86■□□□□ 0.45
CLK3-209ENST00000562670 FAM98CQ17RN3 349 aaKnown RBP17.86■□□□□ 0.45
CLK3-209ENST00000562670 MRPL50Q8N5N7 158 aaKnown RBP17.86■□□□□ 0.45
CLK3-209ENST00000562670 ARHGAP45Q92619 1136 aa17.86■□□□□ 0.45
CLK3-209ENST00000562670 IPO8O15397 1037 aaKnown RBP17.85■□□□□ 0.45
CLK3-209ENST00000562670 ZKSCAN2Q63HK3 967 aa17.85■□□□□ 0.45
CLK3-209ENST00000562670 C5P01031 1676 aa17.84■□□□□ 0.45
CLK3-209ENST00000562670 CICQ96RK0 1608 aaPredicted RBP17.84■□□□□ 0.45
CLK3-209ENST00000562670 ELL2O00472 640 aaPredicted RBP17.84■□□□□ 0.45
CLK3-209ENST00000562670 CCDC30Q5VVM6 783 aa17.84■□□□□ 0.45
CLK3-209ENST00000562670 BCL2L13Q9BXK5 485 aa17.84■□□□□ 0.45
CLK3-209ENST00000562670 TMOD3Q9NYL9 352 aa17.84■□□□□ 0.45
CLK3-209ENST00000562670 KCNQ3O43525 872 aa17.83■□□□□ 0.44
CLK3-209ENST00000562670 PLIN1O60240 522 aa17.83■□□□□ 0.44
CLK3-209ENST00000562670 GIGYF1O75420 1035 aaPredicted RBP17.83■□□□□ 0.44
CLK3-209ENST00000562670 CANXP27824 592 aaKnown RBP17.83■□□□□ 0.44
CLK3-209ENST00000562670 ZNF772Q68DY9 489 aaPredicted RBP17.83■□□□□ 0.44
CLK3-209ENST00000562670 TTC5Q8N0Z6 440 aa17.83■□□□□ 0.44
CLK3-209ENST00000562670 MARCH10Q8NA82 808 aaPredicted RBP17.83■□□□□ 0.44
CLK3-209ENST00000562670 PTPRCP08575 1304 aa17.82■□□□□ 0.44
CLK3-209ENST00000562670 ATF7IPQ6VMQ6 1270 aa17.82■□□□□ 0.44
CLK3-209ENST00000562670 FMNL2Q96PY5 1086 aa17.82■□□□□ 0.44
CLK3-209ENST00000562670 HDGFL1Q5TGJ6 251 aa17.81■□□□□ 0.44
CLK3-209ENST00000562670 STK31Q9BXU1 1019 aa17.81■□□□□ 0.44
CLK3-209ENST00000562670 NHSQ6T4R5 1651 aa17.8■□□□□ 0.44
CLK3-209ENST00000562670 TRIM27P14373 513 aa17.8■□□□□ 0.44
CLK3-209ENST00000562670 IRX6P78412 446 aaPredicted RBP17.8■□□□□ 0.44
CLK3-209ENST00000562670 AAMPQ13685 434 aa17.8■□□□□ 0.44
CLK3-209ENST00000562670 FRAT1Q92837 279 aaPredicted RBP17.8■□□□□ 0.44
CLK3-209ENST00000562670 ZNF496Q96IT1 587 aaPredicted RBP17.8■□□□□ 0.44
CLK3-209ENST00000562670 QTRT2Q9H974 415 aaKnown RBP17.8■□□□□ 0.44
CLK3-209ENST00000562670 RGS12O14924 1447 aa17.8■□□□□ 0.44
CLK3-209ENST00000562670 N4BP2Q86UW6 1770 aaPredicted RBP17.79■□□□□ 0.44
CLK3-209ENST00000562670 ABCC4O15439 1325 aa17.79■□□□□ 0.44
CLK3-209ENST00000562670 SNRPA1P09661 255 aaKnown RBP17.79■□□□□ 0.44
CLK3-209ENST00000562670 SLC39A6Q13433 755 aa17.79■□□□□ 0.44
CLK3-209ENST00000562670 C20orf194Q5TEA3 1177 aa17.79■□□□□ 0.44
CLK3-209ENST00000562670 PIGBQ92521 554 aa17.79■□□□□ 0.44
CLK3-209ENST00000562670 API5Q9BZZ5 524 aaKnown RBP17.79■□□□□ 0.44
CLK3-209ENST00000562670 NOB1Q9ULX3 412 aaKnown RBP17.79■□□□□ 0.44
CLK3-209ENST00000562670 ZNF831Q5JPB2 1677 aa17.79■□□□□ 0.44
CLK3-209ENST00000562670 ERBB4Q15303 1308 aa17.78■□□□□ 0.44
CLK3-209ENST00000562670 PXDNLA1KZ92 1463 aa17.78■□□□□ 0.44
CLK3-209ENST00000562670 DZIP1LQ8IYY4 767 aaKnown RBP17.78■□□□□ 0.44
CLK3-209ENST00000562670 VSIG10Q8N0Z9 540 aa17.78■□□□□ 0.44
CLK3-209ENST00000562670 FTSJ3Q8IY81 847 aaKnown RBP17.77■□□□□ 0.44
CLK3-209ENST00000562670 SLC4A2P04920 1241 aa17.76■□□□□ 0.43
CLK3-209ENST00000562670 CRBNQ96SW2 442 aa17.76■□□□□ 0.43
CLK3-209ENST00000562670 PPP4R2Q9NY27 417 aa17.76■□□□□ 0.43
CLK3-209ENST00000562670 DBF4Q9UBU7 674 aaPredicted RBP17.76■□□□□ 0.43
CLK3-209ENST00000562670 RBM6P78332 1123 aaKnown RBP17.75■□□□□ 0.43
CLK3-209ENST00000562670 ATG3Q9NT62 314 aa17.75■□□□□ 0.43
CLK3-209ENST00000562670 RLBP1P12271 317 aa17.74■□□□□ 0.43
CLK3-209ENST00000562670 PRIM1P49642 420 aaKnown RBP17.74■□□□□ 0.43
CLK3-209ENST00000562670 MVPQ14764 893 aaKnown RBP17.74■□□□□ 0.43
CLK3-209ENST00000562670 SEPT12Q8IYM1 358 aa17.74■□□□□ 0.43
CLK3-209ENST00000562670 EXOC6Q8TAG9 804 aa17.74■□□□□ 0.43
CLK3-209ENST00000562670 A0A0G2JS52 829 aa17.73■□□□□ 0.43
CLK3-209ENST00000562670 MYT1Q01538 1121 aa17.73■□□□□ 0.43
CLK3-209ENST00000562670 FLIIQ13045 1269 aa17.73■□□□□ 0.43
CLK3-209ENST00000562670 PANK1Q8TE04 598 aa17.73■□□□□ 0.43
CLK3-209ENST00000562670 TEX13AQ9BXU3 409 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms