RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CNKSR1Q969H4 720 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 NLRP3Q96P20 1036 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 SLC4A9Q96Q91 983 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 ZNF395Q9H8N7 513 aaPredicted RBP6.66□□□□□ -1.34
VPS35-203ENST00000562420 VRTNQ9H8Y1 702 aa6.66□□□□□ -1.34
VPS35-203ENST00000562420 DNAAF2Q9NVR5 837 aaKnown RBP6.66□□□□□ -1.34
VPS35-203ENST00000562420 TMEM229AB2RXF0 380 aa6.65□□□□□ -1.34
VPS35-203ENST00000562420 ZBTB7BO15156 539 aaPredicted RBP6.65□□□□□ -1.34
VPS35-203ENST00000562420 SRPK2P78362 688 aaKnown RBP6.65□□□□□ -1.34
VPS35-203ENST00000562420 MTFR1Q15390 333 aa6.65□□□□□ -1.34
VPS35-203ENST00000562420 OGFOD1Q8N543 542 aa6.65□□□□□ -1.34
VPS35-203ENST00000562420 FHDC1Q9C0D6 1143 aaPredicted RBP6.65□□□□□ -1.34
VPS35-203ENST00000562420 GRIP2Q9C0E4 1043 aa6.65□□□□□ -1.34
VPS35-203ENST00000562420 POLMQ9NP87 494 aaPredicted RBP6.65□□□□□ -1.34
VPS35-203ENST00000562420 DNMT3LQ9UJW3 386 aa6.65□□□□□ -1.34
VPS35-203ENST00000562420 MEN1O00255 615 aa6.64□□□□□ -1.35
VPS35-203ENST00000562420 BACH1O14867 736 aa6.64□□□□□ -1.35
VPS35-203ENST00000562420 MAN1A2O60476 641 aa6.64□□□□□ -1.35
VPS35-203ENST00000562420 DKK1O94907 266 aa6.64□□□□□ -1.35
VPS35-203ENST00000562420 ELOAQ14241 798 aaKnown RBP6.64□□□□□ -1.35
VPS35-203ENST00000562420 PBXIP1Q96AQ6 731 aa6.64□□□□□ -1.35
VPS35-203ENST00000562420 USP17L15C9J2P7 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L10C9JJH3 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L13C9JLJ4 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L12C9JPN9 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L11C9JVI0 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L21D6R901 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L18D6R9N7 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L22D6RA61 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L17D6RBQ6 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L19D6RCP7 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L20D6RJB6 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 PPP1R15AO75807 674 aaPredicted RBP6.63□□□□□ -1.35
VPS35-203ENST00000562420 RASA1P20936 1047 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 PSME1Q06323 249 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 USP17L24Q0WX57 530 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 PTK7Q13308 1070 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 CCDC102BQ68D86 513 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 LARP1Q6PKG0 1096 aaKnown RBP6.63□□□□□ -1.35
VPS35-203ENST00000562420 LYSMD3Q7Z3D4 306 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 NBPF15Q8N660 670 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 RAB6BQ9NRW1 208 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 KIAA1024Q9UPX6 916 aa6.63□□□□□ -1.35
VPS35-203ENST00000562420 ATG7O95352 703 aa6.62□□□□□ -1.35
VPS35-203ENST00000562420 SMTNP53814 917 aa6.62□□□□□ -1.35
VPS35-203ENST00000562420 CENPCQ03188 943 aa6.62□□□□□ -1.35
VPS35-203ENST00000562420 PPARGC1BQ86YN6 1023 aaKnown RBP6.62□□□□□ -1.35
VPS35-203ENST00000562420 TPCN2Q8NHX9 752 aa6.62□□□□□ -1.35
VPS35-203ENST00000562420 ZSCAN10Q96SZ4 725 aaPredicted RBP6.62□□□□□ -1.35
VPS35-203ENST00000562420 ZNF358Q9NW07 568 aa6.62□□□□□ -1.35
VPS35-203ENST00000562420 RBM19Q9Y4C8 960 aaKnown RBP6.62□□□□□ -1.35
VPS35-203ENST00000562420 EPHA4P54764 986 aa6.61□□□□□ -1.35
VPS35-203ENST00000562420 TLR1Q15399 786 aa6.61□□□□□ -1.35
VPS35-203ENST00000562420 CRTC2Q53ET0 693 aaPredicted RBP6.61□□□□□ -1.35
VPS35-203ENST00000562420 SLC27A3Q5K4L6 730 aa6.61□□□□□ -1.35
VPS35-203ENST00000562420 A6NJY4 79 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 CDK2AP1O14519 115 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 GTF2E1P29083 439 aaPredicted RBP6.6□□□□□ -1.35
VPS35-203ENST00000562420 SEC13P55735 322 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 TAS1R3Q7RTX0 852 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 ANKMY2Q8IV38 441 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 ZNF295-AS1Q8N0V1 137 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 RHBDD1Q8TEB9 315 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 ARXQ96QS3 562 aa6.6□□□□□ -1.35
VPS35-203ENST00000562420 IQSEC3Q9UPP2 1182 aaPredicted RBP6.6□□□□□ -1.35
VPS35-203ENST00000562420 FOXK2Q01167 660 aa6.59□□□□□ -1.35
VPS35-203ENST00000562420 GNASQ5JWF2 1037 aa6.59□□□□□ -1.35
VPS35-203ENST00000562420 NBPF10Q6P3W6 841 aaKnown RBP6.59□□□□□ -1.35
VPS35-203ENST00000562420 POTEAQ6S8J7 498 aa6.59□□□□□ -1.35
VPS35-203ENST00000562420 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS35-203ENST00000562420 ZNF594Q96JF6 807 aaPredicted RBP6.59□□□□□ -1.35
VPS35-203ENST00000562420 SCHIP1Q9P0W5 487 aaPredicted RBP6.59□□□□□ -1.35
VPS35-203ENST00000562420 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.58□□□□□ -1.36
VPS35-203ENST00000562420 SLC35F4A4IF30 521 aa6.58□□□□□ -1.36
VPS35-203ENST00000562420 STAU1O95793 577 aaKnown RBP6.58□□□□□ -1.36
VPS35-203ENST00000562420 PTSQ03393 145 aa6.58□□□□□ -1.36
VPS35-203ENST00000562420 SWI5Q1ZZU3 235 aa6.58□□□□□ -1.36
VPS35-203ENST00000562420 GAS2L2Q8NHY3 880 aa6.58□□□□□ -1.36
VPS35-203ENST00000562420 DYRK1BQ9Y463 629 aa6.58□□□□□ -1.36
VPS35-203ENST00000562420 SENP3-EIF4A1A0A087X0R7 540 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 FIGNL2A6NMB9 653 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 RFX1P22670 979 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 HIRAP54198 1017 aaPredicted RBP6.57□□□□□ -1.36
VPS35-203ENST00000562420 DPYDQ12882 1025 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 TMEM214Q6NUQ4 689 aaKnown RBP6.57□□□□□ -1.36
VPS35-203ENST00000562420 STAG2Q8N3U4 1231 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 C1orf216Q8TAB5 229 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 GMCL1Q96IK5 515 aa6.57□□□□□ -1.36
VPS35-203ENST00000562420 NIFKQ9BYG3 293 aaKnown RBP6.57□□□□□ -1.36
VPS35-203ENST00000562420 NOVA2Q9UNW9 492 aaKnown RBP6.57□□□□□ -1.36
VPS35-203ENST00000562420 ACIN1Q9UKV3 1341 aaKnown RBP6.56□□□□□ -1.36
VPS35-203ENST00000562420 A0A1B0GTH6 734 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 SUPT5HO00267 1087 aaKnown RBP6.56□□□□□ -1.36
VPS35-203ENST00000562420 PPFIA3O75145 1194 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 VSIG8P0DPA2 414 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 PRICKLE2Q7Z3G6 844 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 FAM200AQ8TCP9 573 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 SERTAD1Q9UHV2 236 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 ZMIZ1Q9ULJ6 1067 aa6.56□□□□□ -1.36
VPS35-203ENST00000562420 SFI1A8K8P3 1242 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms