RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZNF496Q96IT1 587 aaPredicted RBP11.3□□□□□ -0.6
VPS39-205ENST00000562258 LRRFIP2Q9Y608 721 aaKnown RBP11.3□□□□□ -0.6
VPS39-205ENST00000562258 IFIT5Q13325 482 aaKnown RBP11.29□□□□□ -0.6
VPS39-205ENST00000562258 AFF2P51816 1311 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 SPATA31A3Q5VYP0 1347 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 ADGRL3Q9HAR2 1447 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 CDCA7Q9BWT1 371 aaPredicted RBP11.29□□□□□ -0.6
VPS39-205ENST00000562258 AXIN2Q9Y2T1 843 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 GCC2Q8IWJ2 1684 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 ERC2O15083 957 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 AACSQ86V21 672 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 SEPT12Q8IYM1 358 aa11.29□□□□□ -0.6
VPS39-205ENST00000562258 PARD3Q8TEW0 1356 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 PIK3R4Q99570 1358 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 KCNQ3O43525 872 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 DHX16O60231 1041 aaKnown RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 TRIM27P14373 513 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 CCDC158Q5M9N0 1113 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 BAG6P46379 1132 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 LRRFIP1Q32MZ4 808 aaKnown RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 LDHAL6AQ6ZMR3 332 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 PHAXQ9H814 394 aaKnown RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 CT47B1P0C2W7 299 aaPredicted RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 HSP90AB3PQ58FF7 597 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 TTC39AQ5SRH9 613 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 AMOTL1Q8IY63 956 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 CWF19L2Q2TBE0 894 aaKnown RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 FOXD4L5Q5VV16 416 aaPredicted RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 MSL1Q68DK7 614 aa11.28□□□□□ -0.6
VPS39-205ENST00000562258 FOXD4L4Q8WXT5 416 aaPredicted RBP11.28□□□□□ -0.6
VPS39-205ENST00000562258 SLC4A3P48751 1232 aa11.27□□□□□ -0.6
VPS39-205ENST00000562258 TRAPPC3LQ5T215 181 aa11.27□□□□□ -0.6
VPS39-205ENST00000562258 ZNF772Q68DY9 489 aaPredicted RBP11.27□□□□□ -0.6
VPS39-205ENST00000562258 NUTM1Q86Y26 1132 aa11.27□□□□□ -0.6
VPS39-205ENST00000562258 MAP3K5Q99683 1374 aa11.27□□□□□ -0.61
VPS39-205ENST00000562258 CWC25Q9NXE8 425 aaPredicted RBP11.27□□□□□ -0.61
VPS39-205ENST00000562258 IQSEC3Q9UPP2 1182 aaPredicted RBP11.27□□□□□ -0.61
VPS39-205ENST00000562258 POLR3AO14802 1390 aaPredicted RBP11.27□□□□□ -0.61
VPS39-205ENST00000562258 SMARCA5O60264 1052 aaPredicted RBP11.27□□□□□ -0.61
VPS39-205ENST00000562258 IDH1O75874 414 aaKnown RBP11.27□□□□□ -0.61
VPS39-205ENST00000562258 STK32BQ9NY57 414 aa11.27□□□□□ -0.61
VPS39-205ENST00000562258 PDZRN3Q9UPQ7 1066 aa11.27□□□□□ -0.61
VPS39-205ENST00000562258 GOLGA6L22H0YM25 854 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 FOXD4L6Q3SYB3 417 aaPredicted RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 FOXD4L3Q6VB84 417 aaPredicted RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 SKAP1Q86WV1 359 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 UNC5CLQ8IV45 518 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 CCDC8Q9H0W5 538 aaPredicted RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 GNL3LQ9NVN8 582 aaKnown RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 ASAP1Q9ULH1 1129 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 PLXNC1O60486 1568 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 CLTCQ00610 1675 aaKnown RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 DDX46Q7L014 1031 aaKnown RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 RUFY2Q8WXA3 655 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 ABCA6Q8N139 1617 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 HMGB2P26583 209 aaKnown RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 KRT27Q7Z3Y8 459 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 ZSCAN29Q8IWY8 852 aaPredicted RBP11.26□□□□□ -0.61
VPS39-205ENST00000562258 LRRCC1Q9C099 1032 aa11.26□□□□□ -0.61
VPS39-205ENST00000562258 GOLGA6L4A6NEF3 574 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 ZRSR1Q15695 479 aaKnown RBP11.25□□□□□ -0.61
VPS39-205ENST00000562258 VPS53Q5VIR6 699 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 PPP1R42Q7Z4L9 355 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 IL17REQ8NFR9 667 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 RAI14Q9P0K7 980 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 TNNQ9UQP3 1299 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 ERBB3P21860 1342 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 KDM4AO75164 1064 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 RRP12Q5JTH9 1297 aaKnown RBP11.25□□□□□ -0.61
VPS39-205ENST00000562258 LRP2BPQ9P2M1 347 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 USP16Q9Y5T5 823 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 USP6P35125 1406 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 LRRIQ1Q96JM4 1722 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 NLRP3Q96P20 1036 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 SLC52A2Q9HAB3 445 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 TET3O43151 1660 aa11.25□□□□□ -0.61
VPS39-205ENST00000562258 ATP2B2Q01814 1243 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 TRDNQ13061 729 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 FAM89AQ96GI7 184 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 CARD10Q9BWT7 1032 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 SNRKQ9NRH2 765 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 KIDINS220Q9ULH0 1771 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 G2E3Q7L622 706 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 HELBQ8NG08 1087 aaPredicted RBP11.24□□□□□ -0.61
VPS39-205ENST00000562258 MEIS3Q99687 375 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 RNF17Q9BXT8 1623 aaKnown RBP11.24□□□□□ -0.61
VPS39-205ENST00000562258 KIF1BO60333 1816 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 PHKG2P15735 406 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 ZKSCAN1P17029 563 aaPredicted RBP11.24□□□□□ -0.61
VPS39-205ENST00000562258 POLD1P28340 1107 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 WDR17Q8IZU2 1322 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 ANKRD18BA2A2Z9 1011 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 LMBR1LQ6UX01 489 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 TPTE2Q6XPS3 522 aa11.24□□□□□ -0.61
VPS39-205ENST00000562258 ANP32BQ92688 251 aaKnown RBP11.23□□□□□ -0.61
VPS39-205ENST00000562258 NSFL1CQ9UNZ2 370 aaKnown RBP11.23□□□□□ -0.61
VPS39-205ENST00000562258 CEP152O94986 1710 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 HCLS1P14317 486 aaPredicted RBP11.23□□□□□ -0.61
VPS39-205ENST00000562258 ALDH1L2Q3SY69 923 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 BOLA2Q9H3K6 86 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms