RNA–Protein interactions for RNA: ENST00000562039.1

NSMCE1-203, Transcript of NSE1 homolog, SMC5-SMC6 complex component, humanhuman

TSL 3

Gene NSMCE1, Length 260 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE1-203ENST00000562039 ERVV-2B6SEH9 535 aa12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 PTCD1O75127 700 aaKnown RBP12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 HSP90AB1P08238 724 aaKnown RBP12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 SLC4A9Q96Q91 983 aa12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 KDRP35968 1356 aa12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 NPC1L1Q9UHC9 1359 aa12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 COL3A1P02461 1466 aaPredicted RBP12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 TAF1LQ8IZX4 1826 aa12.76□□□□□ -0.37
NSMCE1-203ENST00000562039 POLD1P28340 1107 aa12.75□□□□□ -0.37
NSMCE1-203ENST00000562039 C4BP0C0L5 1744 aa12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 GNPATO15228 680 aa12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 DDX10Q13206 875 aaKnown RBP12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 SLC39A6Q13433 755 aa12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 AKAP4Q5JQC9 854 aa12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 CFAP53Q96M91 514 aa12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 SYT17Q9BSW7 474 aa12.74□□□□□ -0.37
NSMCE1-203ENST00000562039 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.73□□□□□ -0.37
NSMCE1-203ENST00000562039 RNMTO43148 476 aaKnown RBP12.73□□□□□ -0.37
NSMCE1-203ENST00000562039 PELP1Q8IZL8 1130 aaKnown RBP12.73□□□□□ -0.37
NSMCE1-203ENST00000562039 SLC16A10Q8TF71 515 aa12.73□□□□□ -0.37
NSMCE1-203ENST00000562039 QSER1Q2KHR3 1735 aa12.72□□□□□ -0.37
NSMCE1-203ENST00000562039 U2AF1L5P0DN76 240 aaPredicted RBP12.72□□□□□ -0.37
NSMCE1-203ENST00000562039 PRKAR2BP31323 418 aa12.72□□□□□ -0.37
NSMCE1-203ENST00000562039 U2AF1Q01081 240 aaKnown RBP eCLIP12.72□□□□□ -0.37
NSMCE1-203ENST00000562039 NLGN2Q8NFZ4 835 aa12.71□□□□□ -0.37
NSMCE1-203ENST00000562039 PHACTR3Q96KR7 559 aa12.71□□□□□ -0.37
NSMCE1-203ENST00000562039 SLC52A2Q9HAB3 445 aa12.71□□□□□ -0.37
NSMCE1-203ENST00000562039 WWC3Q9ULE0 1092 aa12.71□□□□□ -0.37
NSMCE1-203ENST00000562039 DCAF8L1A6NGE4 600 aa12.7□□□□□ -0.38
NSMCE1-203ENST00000562039 SCN11AQ9UI33 1791 aa12.7□□□□□ -0.38
NSMCE1-203ENST00000562039 UBR3Q6ZT12 1888 aa12.7□□□□□ -0.38
NSMCE1-203ENST00000562039 PLEKHG2Q9H7P9 1386 aa12.69□□□□□ -0.38
NSMCE1-203ENST00000562039 DNAJC10Q8IXB1 793 aa12.69□□□□□ -0.38
NSMCE1-203ENST00000562039 RSPH6AQ9H0K4 717 aa12.69□□□□□ -0.38
NSMCE1-203ENST00000562039 NUDCQ9Y266 331 aa12.69□□□□□ -0.38
NSMCE1-203ENST00000562039 VIRMAQ69YN4 1812 aaKnown RBP12.68□□□□□ -0.38
NSMCE1-203ENST00000562039 FLAD1Q8NFF5 587 aa12.68□□□□□ -0.38
NSMCE1-203ENST00000562039 IL17REQ8NFR9 667 aa12.68□□□□□ -0.38
NSMCE1-203ENST00000562039 SSFA2P28290 1259 aa12.67□□□□□ -0.38
NSMCE1-203ENST00000562039 CRKLP46109 303 aaKnown RBP12.67□□□□□ -0.38
NSMCE1-203ENST00000562039 TRAPPC3LQ5T215 181 aa12.67□□□□□ -0.38
NSMCE1-203ENST00000562039 GAS2L2Q8NHY3 880 aa12.67□□□□□ -0.38
NSMCE1-203ENST00000562039 RTCBQ9Y3I0 505 aaKnown RBP12.67□□□□□ -0.38
NSMCE1-203ENST00000562039 MAP3K5Q99683 1374 aa12.67□□□□□ -0.38
NSMCE1-203ENST00000562039 GNAT3A8MTJ3 354 aa12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 YY1P25490 414 aa12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 DCTN1Q14203 1278 aa12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 GPR162Q16538 588 aa12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 ARHGEF1Q92888 912 aaKnown RBP12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 SRP68Q9UHB9 627 aaKnown RBP12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 MYH14Q7Z406 1995 aaKnown RBP12.66□□□□□ -0.38
NSMCE1-203ENST00000562039 KCNQ3O43525 872 aa12.65□□□□□ -0.38
NSMCE1-203ENST00000562039 RPS6KA4O75676 772 aa12.65□□□□□ -0.38
NSMCE1-203ENST00000562039 TEFQ10587 303 aa12.65□□□□□ -0.38
NSMCE1-203ENST00000562039 MCM10Q7L590 875 aa12.65□□□□□ -0.38
NSMCE1-203ENST00000562039 CNTNAP4Q9C0A0 1308 aa12.64□□□□□ -0.39
NSMCE1-203ENST00000562039 RFC4P35249 363 aa12.64□□□□□ -0.39
NSMCE1-203ENST00000562039 COL5A3P25940 1745 aaPredicted RBP12.64□□□□□ -0.39
NSMCE1-203ENST00000562039 TJP1Q07157 1748 aa12.64□□□□□ -0.39
NSMCE1-203ENST00000562039 COL24A1Q17RW2 1714 aa12.63□□□□□ -0.39
NSMCE1-203ENST00000562039 MMP10P09238 476 aa12.63□□□□□ -0.39
NSMCE1-203ENST00000562039 HMGB2P26583 209 aaKnown RBP12.63□□□□□ -0.39
NSMCE1-203ENST00000562039 INTS5Q6P9B9 1019 aaKnown RBP12.63□□□□□ -0.39
NSMCE1-203ENST00000562039 TTC5Q8N0Z6 440 aa12.63□□□□□ -0.39
NSMCE1-203ENST00000562039 MRC1P22897 1456 aa12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 CANXP27824 592 aaKnown RBP12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 RC3H1Q5TC82 1133 aaKnown RBP12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 CCDC87Q9NVE4 849 aa12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 ZBTB1Q9Y2K1 713 aa12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 ZNF330Q9Y3S2 320 aaPredicted RBP12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 KCPQ6ZWJ8 1503 aa12.62□□□□□ -0.39
NSMCE1-203ENST00000562039 BTBD11A6QL63 1104 aa12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 FCHSD2O94868 740 aa12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 CYP19A1P11511 503 aaPredicted RBP12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 GYS1P13807 737 aa12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 YBX3P16989 372 aaKnown RBP eCLIP12.61□□□□□ -0.392e-10■□□□□ 9.6
NSMCE1-203ENST00000562039 RTF1Q92541 710 aaKnown RBP12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 ZNF496Q96IT1 587 aaPredicted RBP12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 MIS18AQ9NYP9 233 aa12.61□□□□□ -0.39
NSMCE1-203ENST00000562039 PRAMEF22A3QJZ6 481 aa12.6□□□□□ -0.39
NSMCE1-203ENST00000562039 PIP4K2AP48426 406 aaPredicted RBP12.6□□□□□ -0.39
NSMCE1-203ENST00000562039 FKBP8Q14318 412 aa12.6□□□□□ -0.39
NSMCE1-203ENST00000562039 THUMPD2Q9BTF0 503 aaKnown RBP12.6□□□□□ -0.39
NSMCE1-203ENST00000562039 ADAMTS7Q9UKP4 1686 aa12.6□□□□□ -0.39
NSMCE1-203ENST00000562039 USPL1Q5W0Q7 1092 aa12.59□□□□□ -0.39
NSMCE1-203ENST00000562039 ZNF790Q6PG37 636 aa12.59□□□□□ -0.39
NSMCE1-203ENST00000562039 CCDC146Q8IYE0 955 aa12.59□□□□□ -0.39
NSMCE1-203ENST00000562039 C4AP0C0L4 1744 aa12.59□□□□□ -0.39
NSMCE1-203ENST00000562039 ZNF831Q5JPB2 1677 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 NEFMP07197 916 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 ADRA2BP18089 450 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 RALBP1Q15311 655 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 NLGN1Q8N2Q7 840 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 CD2APQ9Y5K6 639 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 PARP3Q9Y6F1 533 aa12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 CICQ96RK0 1608 aaPredicted RBP12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 SOS1Q07889 1333 aaPredicted RBP12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 USP42Q9H9J4 1324 aaKnown RBP12.58□□□□□ -0.4
NSMCE1-203ENST00000562039 HEG1Q9ULI3 1381 aa12.57□□□□□ -0.4
NSMCE1-203ENST00000562039 A1BGP04217 495 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms