RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 HRH3Q9Y5N1 445 aa11.87□□□□□ -0.51
SMG1-204ENST00000561940 PHKA2P46019 1235 aa11.86□□□□□ -0.51
SMG1-204ENST00000561940 TLR1Q15399 786 aa11.86□□□□□ -0.51
SMG1-204ENST00000561940 CFAP70Q5T0N1 1121 aa11.86□□□□□ -0.51
SMG1-204ENST00000561940 ZNF594Q96JF6 807 aaPredicted RBP11.86□□□□□ -0.51
SMG1-204ENST00000561940 DNAAF2Q9NVR5 837 aaKnown RBP11.86□□□□□ -0.51
SMG1-204ENST00000561940 PPFIA3O75145 1194 aa11.85□□□□□ -0.51
SMG1-204ENST00000561940 RASA1P20936 1047 aa11.85□□□□□ -0.51
SMG1-204ENST00000561940 TMEM214Q6NUQ4 689 aaKnown RBP11.85□□□□□ -0.51
SMG1-204ENST00000561940 CCDC155Q8N6L0 562 aa11.85□□□□□ -0.51
SMG1-204ENST00000561940 TPCN2Q8NHX9 752 aa11.85□□□□□ -0.51
SMG1-204ENST00000561940 FHDC1Q9C0D6 1143 aaPredicted RBP11.85□□□□□ -0.51
SMG1-204ENST00000561940 SERPINA10Q9UK55 444 aa11.85□□□□□ -0.51
SMG1-204ENST00000561940 WFS1O76024 890 aa11.84□□□□□ -0.51
SMG1-204ENST00000561940 ATP1A2P50993 1020 aa11.84□□□□□ -0.51
SMG1-204ENST00000561940 NFX1Q12986 1120 aaKnown RBP11.84□□□□□ -0.51
SMG1-204ENST00000561940 CCDC102BQ68D86 513 aa11.84□□□□□ -0.51
SMG1-204ENST00000561940 SENP3-EIF4A1A0A087X0R7 540 aa11.83□□□□□ -0.52
SMG1-204ENST00000561940 SLC35F4A4IF30 521 aa11.83□□□□□ -0.52
SMG1-204ENST00000561940 KANK4Q5T7N3 995 aaPredicted RBP11.83□□□□□ -0.52
SMG1-204ENST00000561940 VRTNQ9H8Y1 702 aa11.83□□□□□ -0.52
SMG1-204ENST00000561940 ZNF358Q9NW07 568 aa11.83□□□□□ -0.52
SMG1-204ENST00000561940 GTF2E1P29083 439 aaPredicted RBP11.82□□□□□ -0.52
SMG1-204ENST00000561940 SMTNP53814 917 aa11.82□□□□□ -0.52
SMG1-204ENST00000561940 NBPF10Q6P3W6 841 aaKnown RBP11.82□□□□□ -0.52
SMG1-204ENST00000561940 TREML4Q6UXN2 200 aa11.82□□□□□ -0.52
SMG1-204ENST00000561940 NBPF15Q8N660 670 aa11.82□□□□□ -0.52
SMG1-204ENST00000561940 SLC16A10Q8TF71 515 aa11.81□□□□□ -0.52
SMG1-204ENST00000561940 SFI1A8K8P3 1242 aa11.8□□□□□ -0.52
SMG1-204ENST00000561940 H3BM21 787 aa11.8□□□□□ -0.52
SMG1-204ENST00000561940 WASLO00401 505 aaPredicted RBP11.8□□□□□ -0.52
SMG1-204ENST00000561940 CRTC2Q53ET0 693 aaPredicted RBP11.8□□□□□ -0.52
SMG1-204ENST00000561940 GNASQ5JWF2 1037 aa11.8□□□□□ -0.52
SMG1-204ENST00000561940 LARP1Q6PKG0 1096 aaKnown RBP11.8□□□□□ -0.52
SMG1-204ENST00000561940 TAS1R3Q7RTX0 852 aa11.8□□□□□ -0.52
SMG1-204ENST00000561940 TNS4Q8IZW8 715 aa11.8□□□□□ -0.52
SMG1-204ENST00000561940 GAS2L1Q99501 681 aaPredicted RBP11.8□□□□□ -0.52
SMG1-204ENST00000561940 SPATA31C2B4DYI2 1134 aa11.79□□□□□ -0.52
SMG1-204ENST00000561940 LCE2CQ5TA81 110 aa11.79□□□□□ -0.52
SMG1-204ENST00000561940 LARGE2Q8N3Y3 721 aa11.79□□□□□ -0.52
SMG1-204ENST00000561940 TIMMDC1Q9NPL8 285 aa11.79□□□□□ -0.52
SMG1-204ENST00000561940 USP3Q9Y6I4 520 aa11.79□□□□□ -0.52
SMG1-204ENST00000561940 A6NJY4 79 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 BACH1O14867 736 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 LGR5O75473 907 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 C4orf17Q53FE4 359 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 TBCELQ5QJ74 424 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 PPARGC1BQ86YN6 1023 aaKnown RBP11.78□□□□□ -0.52
SMG1-204ENST00000561940 SLC4A9Q96Q91 983 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 ERBB4Q15303 1308 aa11.78□□□□□ -0.52
SMG1-204ENST00000561940 RIPOR1Q6ZS17 1223 aa11.77□□□□□ -0.53
SMG1-204ENST00000561940 RBM19Q9Y4C8 960 aaKnown RBP11.77□□□□□ -0.53
SMG1-204ENST00000561940 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.76□□□□□ -0.53
SMG1-204ENST00000561940 CDC14CA4D256 554 aa11.76□□□□□ -0.53
SMG1-204ENST00000561940 ITGA6P23229 1130 aa11.76□□□□□ -0.53
SMG1-204ENST00000561940 NPAS3Q8IXF0 933 aa11.76□□□□□ -0.53
SMG1-204ENST00000561940 RHBDD1Q8TEB9 315 aa11.76□□□□□ -0.53
SMG1-204ENST00000561940 CUEDC1Q9NWM3 386 aaPredicted RBP11.76□□□□□ -0.53
SMG1-204ENST00000561940 USP17L15C9J2P7 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L10C9JJH3 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L13C9JLJ4 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L12C9JPN9 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L11C9JVI0 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L21D6R901 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L18D6R9N7 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L22D6RA61 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L17D6RBQ6 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L19D6RCP7 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L20D6RJB6 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 DKK1O94907 266 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 PLA2G4AP47712 749 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 USP17L24Q0WX57 530 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 DPYDQ12882 1025 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 PTK7Q13308 1070 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 VWA5B2Q8N398 1253 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 TSEN2Q8NCE0 465 aaKnown RBP11.75□□□□□ -0.53
SMG1-204ENST00000561940 GPAMQ9HCL2 828 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 PARP3Q9Y6F1 533 aa11.75□□□□□ -0.53
SMG1-204ENST00000561940 MTFR1Q15390 333 aa11.74□□□□□ -0.53
SMG1-204ENST00000561940 LCE2AQ5TA79 106 aaPredicted RBP11.74□□□□□ -0.53
SMG1-204ENST00000561940 SIX5Q8N196 739 aa11.74□□□□□ -0.53
SMG1-204ENST00000561940 IRF7Q92985 503 aa11.74□□□□□ -0.53
SMG1-204ENST00000561940 AIDAQ96BJ3 306 aa11.74□□□□□ -0.53
SMG1-204ENST00000561940 CABP1Q9NZU7 370 aa11.74□□□□□ -0.53
SMG1-204ENST00000561940 CDK2AP1O14519 115 aa11.73□□□□□ -0.53
SMG1-204ENST00000561940 DYRK1BQ9Y463 629 aa11.73□□□□□ -0.53
SMG1-204ENST00000561940 SEC13P55735 322 aa11.72□□□□□ -0.53
SMG1-204ENST00000561940 GPR161Q8N6U8 529 aaKnown RBP11.72□□□□□ -0.53
SMG1-204ENST00000561940 NIFKQ9BYG3 293 aaKnown RBP11.72□□□□□ -0.53
SMG1-204ENST00000561940 IQSEC3Q9UPP2 1182 aaPredicted RBP11.72□□□□□ -0.53
SMG1-204ENST00000561940 GMPRP36959 345 aa11.71□□□□□ -0.53
SMG1-204ENST00000561940 WDR44Q5JSH3 913 aa11.71□□□□□ -0.53
SMG1-204ENST00000561940 ANKMY2Q8IV38 441 aa11.71□□□□□ -0.53
SMG1-204ENST00000561940 HINFPQ9BQA5 517 aa11.71□□□□□ -0.53
SMG1-204ENST00000561940 SCHIP1Q9P0W5 487 aaPredicted RBP11.71□□□□□ -0.53
SMG1-204ENST00000561940 FAM196BA6NMK8 535 aa11.7□□□□□ -0.54
SMG1-204ENST00000561940 EPHA4P54764 986 aa11.7□□□□□ -0.54
SMG1-204ENST00000561940 DBN1Q16643 649 aa11.7□□□□□ -0.54
SMG1-204ENST00000561940 SLC9A9Q8IVB4 645 aa11.7□□□□□ -0.54
SMG1-204ENST00000561940 GAS2L2Q8NHY3 880 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 159.6 ms