RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TMOD3Q9NYL9 352 aa26.13■■□□□ 1.77
VPS35-202ENST00000561713 ITPK1Q13572 414 aa26.12■■□□□ 1.77
VPS35-202ENST00000561713 EIF4A2Q14240 407 aaKnown RBP26.11■■□□□ 1.77
VPS35-202ENST00000561713 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.11■■□□□ 1.776e-7■■□□□ 12.6
VPS35-202ENST00000561713 GNPATO15228 680 aa26.1■■□□□ 1.77
VPS35-202ENST00000561713 PHKG2P15735 406 aa26.1■■□□□ 1.77
VPS35-202ENST00000561713 ATP6V1AP38606 617 aa26.1■■□□□ 1.77
VPS35-202ENST00000561713 IFNL2Q8IZJ0 200 aa26.09■■□□□ 1.77
VPS35-202ENST00000561713 ATG3Q9NT62 314 aa26.08■■□□□ 1.77
VPS35-202ENST00000561713 MMP10P09238 476 aa26.04■■□□□ 1.76
VPS35-202ENST00000561713 IFFO2Q5TF58 517 aa26.02■■□□□ 1.76
VPS35-202ENST00000561713 KIF7Q2M1P5 1343 aa26.02■■□□□ 1.76
VPS35-202ENST00000561713 HSPA6P17066 643 aa26.01■■□□□ 1.75
VPS35-202ENST00000561713 MORC1Q86VD1 984 aa26.01■■□□□ 1.75
VPS35-202ENST00000561713 SLC4A9Q96Q91 983 aa26.01■■□□□ 1.75
VPS35-202ENST00000561713 KDRP35968 1356 aa26■■□□□ 1.75
VPS35-202ENST00000561713 TRAPPC3LQ5T215 181 aa25.99■■□□□ 1.75
VPS35-202ENST00000561713 VIRMAQ69YN4 1812 aaKnown RBP25.99■■□□□ 1.75
VPS35-202ENST00000561713 PXDNLA1KZ92 1463 aa25.98■■□□□ 1.75
VPS35-202ENST00000561713 RBM42Q9BTD8 480 aaKnown RBP25.98■■□□□ 1.75
VPS35-202ENST00000561713 RTCBQ9Y3I0 505 aaKnown RBP25.98■■□□□ 1.75
VPS35-202ENST00000561713 AEBP1Q8IUX7 1158 aa25.97■■□□□ 1.75
VPS35-202ENST00000561713 KNSTRNQ9Y448 316 aa25.97■■□□□ 1.75
VPS35-202ENST00000561713 CICQ96RK0 1608 aaPredicted RBP25.96■■□□□ 1.75
VPS35-202ENST00000561713 ERVV-2B6SEH9 535 aa25.96■■□□□ 1.75
VPS35-202ENST00000561713 KIF3CO14782 793 aa25.96■■□□□ 1.75
VPS35-202ENST00000561713 COL5A3P25940 1745 aaPredicted RBP25.95■■□□□ 1.74
VPS35-202ENST00000561713 KIAA1551Q9HCM1 1747 aa25.95■■□□□ 1.74
VPS35-202ENST00000561713 A0A0G2JLW4 131 aa25.95■■□□□ 1.74
VPS35-202ENST00000561713 NLGN1Q8N2Q7 840 aa25.95■■□□□ 1.74
VPS35-202ENST00000561713 ARHGEF1Q92888 912 aaKnown RBP25.95■■□□□ 1.74
VPS35-202ENST00000561713 KDM6AO15550 1401 aaPredicted RBP25.95■■□□□ 1.74
VPS35-202ENST00000561713 KIF13BQ9NQT8 1826 aa25.95■■□□□ 1.74
VPS35-202ENST00000561713 N4BP2Q86UW6 1770 aaPredicted RBP25.95■■□□□ 1.74
VPS35-202ENST00000561713 TGFB2P61812 414 aa25.94■■□□□ 1.74
VPS35-202ENST00000561713 DCAF5Q96JK2 942 aa25.94■■□□□ 1.74
VPS35-202ENST00000561713 PLEKHG2Q9H7P9 1386 aa25.94■■□□□ 1.74
VPS35-202ENST00000561713 RC3H1Q5TC82 1133 aaKnown RBP25.93■■□□□ 1.74
VPS35-202ENST00000561713 BCS1LQ9Y276 419 aa25.93■■□□□ 1.74
VPS35-202ENST00000561713 SCN11AQ9UI33 1791 aa25.92■■□□□ 1.74
VPS35-202ENST00000561713 AMER1Q5JTC6 1135 aaPredicted RBP25.92■■□□□ 1.74
VPS35-202ENST00000561713 C10orf71Q711Q0 1435 aa25.91■■□□□ 1.74
VPS35-202ENST00000561713 ZNF831Q5JPB2 1677 aa25.91■■□□□ 1.74
VPS35-202ENST00000561713 HSP90AB1P08238 724 aaKnown RBP25.91■■□□□ 1.74
VPS35-202ENST00000561713 GYS1P13807 737 aa25.91■■□□□ 1.74
VPS35-202ENST00000561713 PLEKHO1Q53GL0 409 aaPredicted RBP25.91■■□□□ 1.74
VPS35-202ENST00000561713 CNTNAP4Q9C0A0 1308 aa25.9■■□□□ 1.74
VPS35-202ENST00000561713 ADRA2BP18089 450 aa25.9■■□□□ 1.74
VPS35-202ENST00000561713 RFC4P35249 363 aa25.9■■□□□ 1.74
VPS35-202ENST00000561713 ZNF530Q6P9A1 599 aaPredicted RBP25.9■■□□□ 1.74
VPS35-202ENST00000561713 RPS6KA4O75676 772 aa25.89■■□□□ 1.74
VPS35-202ENST00000561713 DPEP1P16444 411 aa25.89■■□□□ 1.74
VPS35-202ENST00000561713 CABP4P57796 275 aa25.89■■□□□ 1.74
VPS35-202ENST00000561713 ARHGAP27Q6ZUM4 889 aa25.88■■□□□ 1.73
VPS35-202ENST00000561713 CCDC87Q9NVE4 849 aa25.88■■□□□ 1.73
VPS35-202ENST00000561713 C4AP0C0L4 1744 aa25.88■■□□□ 1.73
VPS35-202ENST00000561713 PARP3Q9Y6F1 533 aa25.87■■□□□ 1.73
VPS35-202ENST00000561713 MYH14Q7Z406 1995 aaKnown RBP25.86■■□□□ 1.73
VPS35-202ENST00000561713 PTCD1O75127 700 aaKnown RBP25.86■■□□□ 1.73
VPS35-202ENST00000561713 CNGB1Q14028 1251 aaPredicted RBP25.86■■□□□ 1.73
VPS35-202ENST00000561713 AMOTQ4VCS5 1084 aa25.86■■□□□ 1.73
VPS35-202ENST00000561713 SULT6B1Q6IMI4 303 aa25.86■■□□□ 1.73
VPS35-202ENST00000561713 TJP1Q07157 1748 aa25.85■■□□□ 1.73
VPS35-202ENST00000561713 FCHSD2O94868 740 aa25.85■■□□□ 1.73
VPS35-202ENST00000561713 MTHFSP49914 203 aa25.85■■□□□ 1.73
VPS35-202ENST00000561713 CC2D1BQ5T0F9 858 aaKnown RBP25.85■■□□□ 1.73
VPS35-202ENST00000561713 IL13P35225 146 aa25.84■■□□□ 1.73
VPS35-202ENST00000561713 KCNA3P22001 575 aa25.83■■□□□ 1.73
VPS35-202ENST00000561713 NFATC2IPQ8NCF5 419 aa25.83■■□□□ 1.73
VPS35-202ENST00000561713 CRKLP46109 303 aaKnown RBP25.82■■□□□ 1.72
VPS35-202ENST00000561713 C1orf141Q5JVX7 400 aa25.82■■□□□ 1.72
VPS35-202ENST00000561713 SRP68Q9UHB9 627 aaKnown RBP25.82■■□□□ 1.72
VPS35-202ENST00000561713 TOMM70O94826 608 aa25.81■■□□□ 1.72
VPS35-202ENST00000561713 NMRK2Q9NPI5 230 aa25.81■■□□□ 1.72
VPS35-202ENST00000561713 BRCA1P38398 1863 aaKnown RBP25.81■■□□□ 1.72
VPS35-202ENST00000561713 COL3A1P02461 1466 aaPredicted RBP25.79■■□□□ 1.72
VPS35-202ENST00000561713 APLP1P51693 650 aa25.79■■□□□ 1.72
VPS35-202ENST00000561713 FKBP8Q14318 412 aa25.79■■□□□ 1.72
VPS35-202ENST00000561713 PER1O15534 1290 aaPredicted RBP25.78■■□□□ 1.72
VPS35-202ENST00000561713 HMOX1P09601 288 aa25.78■■□□□ 1.72
VPS35-202ENST00000561713 DDR1Q08345 913 aa25.78■■□□□ 1.72
VPS35-202ENST00000561713 USP42Q9H9J4 1324 aaKnown RBP25.78■■□□□ 1.72
VPS35-202ENST00000561713 C9orf131Q5VYM1 1079 aa25.77■■□□□ 1.72
VPS35-202ENST00000561713 PIM2Q9P1W9 311 aa25.77■■□□□ 1.72
VPS35-202ENST00000561713 ADAMTS7Q9UKP4 1686 aa25.75■■□□□ 1.71
VPS35-202ENST00000561713 MRC1P22897 1456 aa25.75■■□□□ 1.71
VPS35-202ENST00000561713 INTS5Q6P9B9 1019 aaKnown RBP25.75■■□□□ 1.71
VPS35-202ENST00000561713 DALRD3Q5D0E6 543 aaKnown RBP25.74■■□□□ 1.71
VPS35-202ENST00000561713 DNAJC5GQ8N7S2 189 aa25.74■■□□□ 1.71
VPS35-202ENST00000561713 ARFGEF1Q9Y6D6 1849 aa25.74■■□□□ 1.71
VPS35-202ENST00000561713 CHRNA5P30532 468 aa25.73■■□□□ 1.71
VPS35-202ENST00000561713 POLRMTO00411 1230 aaKnown RBP25.71■■□□□ 1.71
VPS35-202ENST00000561713 TM4SF1P30408 202 aa25.7■■□□□ 1.7
VPS35-202ENST00000561713 DNAJC10Q8IXB1 793 aa25.7■■□□□ 1.7
VPS35-202ENST00000561713 LGR6Q9HBX8 967 aa25.7■■□□□ 1.7
VPS35-202ENST00000561713 UBR2Q8IWV8 1755 aa25.69■■□□□ 1.7
VPS35-202ENST00000561713 RBM46Q8TBY0 533 aaKnown RBP25.69■■□□□ 1.7
VPS35-202ENST00000561713 DIAPH1O60610 1272 aaKnown RBP25.68■■□□□ 1.7
VPS35-202ENST00000561713 AKAP4Q5JQC9 854 aa25.68■■□□□ 1.7
VPS35-202ENST00000561713 USPL1Q5W0Q7 1092 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms