RNA–Protein interactions for RNA: ENST00000561367.1

KNSTRN-215, Transcript of kinetochore localized astrin (SPAG5) binding protein, human

TSL 2

Gene KNSTRN, Length 630 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KNSTRN-215	ENST00000561367	EYA1	Q99502	592 aa		13.21	□□□□□ -0.29
KNSTRN-215	ENST00000561367	ONECUT3	O60422	494 aa	Predicted RBP	13.2	□□□□□ -0.3
KNSTRN-215	ENST00000561367	NBPF6	Q5VWK0	638 aa		13.2	□□□□□ -0.3
KNSTRN-215	ENST00000561367	SLAIN1	Q8ND83	568 aa		13.2	□□□□□ -0.3
KNSTRN-215	ENST00000561367	NBPF4	Q96M43	638 aa		13.2	□□□□□ -0.3
KNSTRN-215	ENST00000561367	RGPD1	P0DJD0	1748 aa		13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	FCHSD2	O94868	740 aa		13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	RXRB	P28702	533 aa		13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	WDR43	Q15061	677 aa	Known RBP eCLIP	13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	RAPGEF4	Q8WZA2	1011 aa		13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	MRS2	Q9HD23	443 aa		13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	RGS17	Q9UGC6	210 aa	Predicted RBP	13.19	□□□□□ -0.3
KNSTRN-215	ENST00000561367	U2SURP	O15042	1029 aa	Known RBP	13.18	□□□□□ -0.3
KNSTRN-215	ENST00000561367	IL2RB	P14784	551 aa		13.18	□□□□□ -0.3
KNSTRN-215	ENST00000561367	GLI3	P10071	1580 aa		13.17	□□□□□ -0.3
KNSTRN-215	ENST00000561367	DISP2	A7MBM2	1401 aa		13.17	□□□□□ -0.3
KNSTRN-215	ENST00000561367	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.17	□□□□□ -0.3
KNSTRN-215	ENST00000561367	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
KNSTRN-215	ENST00000561367	NEFM	P07197	916 aa		13.16	□□□□□ -0.3
KNSTRN-215	ENST00000561367	TAT	P17735	454 aa	Predicted RBP	13.16	□□□□□ -0.3
KNSTRN-215	ENST00000561367	AMOT	Q4VCS5	1084 aa		13.16	□□□□□ -0.3
KNSTRN-215	ENST00000561367	SULT6B1	Q6IMI4	303 aa		13.16	□□□□□ -0.3
KNSTRN-215	ENST00000561367	USP35	Q9P2H5	1018 aa		13.16	□□□□□ -0.3
KNSTRN-215	ENST00000561367	OVOS2	A0A0G2JMS6	1433 aa		13.15	□□□□□ -0.3
KNSTRN-215	ENST00000561367	PNISR	Q8TF01	805 aa	Known RBP	13.15	□□□□□ -0.3
KNSTRN-215	ENST00000561367	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.15	□□□□□ -0.3
KNSTRN-215	ENST00000561367	PARP4	Q9UKK3	1724 aa	Known RBP	13.15	□□□□□ -0.3
KNSTRN-215	ENST00000561367	FAM98C	Q17RN3	349 aa	Known RBP	13.14	□□□□□ -0.31
KNSTRN-215	ENST00000561367	POTEA	Q6S8J7	498 aa		13.14	□□□□□ -0.31
KNSTRN-215	ENST00000561367	SPG7	Q9UQ90	795 aa		13.14	□□□□□ -0.31
KNSTRN-215	ENST00000561367	THSD7A	Q9UPZ6	1657 aa		13.14	□□□□□ -0.31
KNSTRN-215	ENST00000561367	EXOC5	O00471	708 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	DDB1	Q16531	1140 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	USHBP1	Q8N6Y0	703 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	MS4A4A	Q96JQ5	239 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	RSPH6A	Q9H0K4	717 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	WNK3	Q9BYP7	1800 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	TNS2	Q63HR2	1409 aa		13.13	□□□□□ -0.31
KNSTRN-215	ENST00000561367	RGPD2	P0DJD1	1756 aa		13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	ZCRB1	Q8TBF4	217 aa	Known RBP	13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	FAM163A	Q96GL9	167 aa	Predicted RBP	13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	MEGF6	O75095	1541 aa		13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PCDH11X	Q9BZA7	1347 aa		13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PCDH11Y	Q9BZA8	1340 aa		13.12	□□□□□ -0.31
KNSTRN-215	ENST00000561367	HMOX1	P09601	288 aa		13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367	AEBP1	Q8IUX7	1158 aa		13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367	SEPT12	Q8IYM1	358 aa		13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367	GAS2L2	Q8NHY3	880 aa		13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367	ADAMTS8	Q9UP79	889 aa		13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367	MAPK8IP3	Q9UPT6	1336 aa		13.11	□□□□□ -0.31
KNSTRN-215	ENST00000561367		A0A0G2JS52	829 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	HSP90AB1	P08238	724 aa	Known RBP	13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PRKAR2B	P31323	418 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	MYT1	Q01538	1121 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PDE3B	Q13370	1112 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	CCDC184	Q52MB2	194 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	RUNDC1	Q96C34	613 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PKD1L3	Q7Z443	1732 aa		13.1	□□□□□ -0.31
KNSTRN-215	ENST00000561367	POTEM	A6NI47	508 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	BCL9	O00512	1426 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	NGEF	Q8N5V2	710 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	PLEKHF1	Q96S99	279 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	BOLA1	Q9Y3E2	137 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	STK24	Q9Y6E0	443 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	LRRC37A3	O60309	1634 aa		13.09	□□□□□ -0.31
KNSTRN-215	ENST00000561367	RGS12	O14924	1447 aa		13.08	□□□□□ -0.32
KNSTRN-215	ENST00000561367	IFNL2	Q8IZJ0	200 aa		13.08	□□□□□ -0.32
KNSTRN-215	ENST00000561367	STK25	O00506	426 aa		13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	HTATSF1	O43719	755 aa	Known RBP	13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	AKAP4	Q5JQC9	854 aa		13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	C1orf141	Q5JVX7	400 aa		13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	POTEG	Q6S5H5	508 aa		13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	C3orf67	Q6ZVT6	689 aa		13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	KRT27	Q7Z3Y8	459 aa		13.07	□□□□□ -0.32
KNSTRN-215	ENST00000561367	NKX1-1	Q15270	411 aa	Predicted RBP	13.06	□□□□□ -0.32
KNSTRN-215	ENST00000561367	TAOK2	Q9UL54	1235 aa		13.06	□□□□□ -0.32
KNSTRN-215	ENST00000561367	PHKG2	P15735	406 aa		13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	LMOD3	Q0VAK6	560 aa		13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	MTHFSD	Q2M296	383 aa	Known RBP	13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	FAM9B	Q8IZU0	186 aa		13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	FBXO22	Q8NEZ5	403 aa		13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.05	□□□□□ -0.32
KNSTRN-215	ENST00000561367	GNAT3	A8MTJ3	354 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	CYP27B1	O15528	508 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	NFE2L2	Q16236	605 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	FAM196A	Q6ZSG2	479 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	DDX54	Q8TDD1	881 aa	Known RBP	13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	DCAF5	Q96JK2	942 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	PHACTR3	Q96KR7	559 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	MAP3K5	Q99683	1374 aa		13.04	□□□□□ -0.32
KNSTRN-215	ENST00000561367	MARCH10	Q8NA82	808 aa	Predicted RBP	13.03	□□□□□ -0.32
KNSTRN-215	ENST00000561367	MFRP	Q9BY79	579 aa		13.03	□□□□□ -0.32
KNSTRN-215	ENST00000561367	SHANK3	Q9BYB0	1731 aa		13.02	□□□□□ -0.32
KNSTRN-215	ENST00000561367	TMPO	P42166	694 aa	Known RBP	13.02	□□□□□ -0.33
KNSTRN-215	ENST00000561367	RTF1	Q92541	710 aa	Known RBP	13.02	□□□□□ -0.33
KNSTRN-215	ENST00000561367	ERVV-2	B6SEH9	535 aa		13.01	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms