RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 DCAF5Q96JK2 942 aa21.69■■□□□ 1.06
LMX1B-204ENST00000561065 AMOTQ4VCS5 1084 aa21.68■■□□□ 1.06
LMX1B-204ENST00000561065 MSL1Q68DK7 614 aa21.68■■□□□ 1.06
LMX1B-204ENST00000561065 TJP1Q07157 1748 aa21.68■■□□□ 1.06
LMX1B-204ENST00000561065 CICQ96RK0 1608 aaPredicted RBP21.68■■□□□ 1.06
LMX1B-204ENST00000561065 ERVV-2B6SEH9 535 aa21.67■■□□□ 1.06
LMX1B-204ENST00000561065 CNGB1Q14028 1251 aaPredicted RBP21.67■■□□□ 1.06
LMX1B-204ENST00000561065 SLC4A9Q96Q91 983 aa21.67■■□□□ 1.06
LMX1B-204ENST00000561065 MRC1P22897 1456 aa21.67■■□□□ 1.06
LMX1B-204ENST00000561065 MSH5O43196 834 aa21.66■■□□□ 1.06
LMX1B-204ENST00000561065 HSP90AB1P08238 724 aaKnown RBP21.66■■□□□ 1.06
LMX1B-204ENST00000561065 AK7Q96M32 723 aa21.66■■□□□ 1.06
LMX1B-204ENST00000561065 MYH14Q7Z406 1995 aaKnown RBP21.66■■□□□ 1.06
LMX1B-204ENST00000561065 HMOX1P09601 288 aa21.65■■□□□ 1.06
LMX1B-204ENST00000561065 POLD1P28340 1107 aa21.65■■□□□ 1.06
LMX1B-204ENST00000561065 C4AP0C0L4 1744 aa21.65■■□□□ 1.06
LMX1B-204ENST00000561065 PHF14O94880 888 aa21.63■■□□□ 1.05
LMX1B-204ENST00000561065 ATP6V1AP38606 617 aa21.63■■□□□ 1.05
LMX1B-204ENST00000561065 C1orf141Q5JVX7 400 aa21.63■■□□□ 1.05
LMX1B-204ENST00000561065 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.62■■□□□ 1.05
LMX1B-204ENST00000561065 DIAPH1O60610 1272 aaKnown RBP21.62■■□□□ 1.05
LMX1B-204ENST00000561065 KLHL34Q8N239 644 aa21.62■■□□□ 1.05
LMX1B-204ENST00000561065 CHD4Q14839 1912 aa21.62■■□□□ 1.05
LMX1B-204ENST00000561065 FLAD1Q8NFF5 587 aa21.61■■□□□ 1.05
LMX1B-204ENST00000561065 NLGN2Q8NFZ4 835 aa21.61■■□□□ 1.05
LMX1B-204ENST00000561065 YY1P25490 414 aa21.6■■□□□ 1.05
LMX1B-204ENST00000561065 SSFA2P28290 1259 aa21.6■■□□□ 1.05
LMX1B-204ENST00000561065 CABP4P57796 275 aa21.6■■□□□ 1.05
LMX1B-204ENST00000561065 GNPATO15228 680 aa21.59■■□□□ 1.05
LMX1B-204ENST00000561065 UBR2Q8IWV8 1755 aa21.59■■□□□ 1.05
LMX1B-204ENST00000561065 AKAP4Q5JQC9 854 aa21.58■■□□□ 1.05
LMX1B-204ENST00000561065 NFATC2IPQ8NCF5 419 aa21.58■■□□□ 1.05
LMX1B-204ENST00000561065 RBM42Q9BTD8 480 aaKnown RBP21.58■■□□□ 1.05
LMX1B-204ENST00000561065 SIPA1L3O60292 1781 aaPredicted RBP21.58■■□□□ 1.05
LMX1B-204ENST00000561065 DCAF8L1A6NGE4 600 aa21.57■■□□□ 1.04
LMX1B-204ENST00000561065 HMGB2P26583 209 aaKnown RBP21.57■■□□□ 1.04
LMX1B-204ENST00000561065 MTHFSDQ2M296 383 aaKnown RBP21.57■■□□□ 1.04
LMX1B-204ENST00000561065 KCPQ6ZWJ8 1503 aa21.57■■□□□ 1.04
LMX1B-204ENST00000561065 LGR6Q9HBX8 967 aa21.56■■□□□ 1.04
LMX1B-204ENST00000561065 CNTNAP4Q9C0A0 1308 aa21.56■■□□□ 1.04
LMX1B-204ENST00000561065 KIAA1551Q9HCM1 1747 aa21.54■■□□□ 1.04
LMX1B-204ENST00000561065 RNMTO43148 476 aaKnown RBP21.54■■□□□ 1.04
LMX1B-204ENST00000561065 PTCD1O75127 700 aaKnown RBP21.54■■□□□ 1.04
LMX1B-204ENST00000561065 SLC52A2Q9HAB3 445 aa21.54■■□□□ 1.04
LMX1B-204ENST00000561065 KIF13BQ9NQT8 1826 aa21.53■■□□□ 1.04
LMX1B-204ENST00000561065 U2SURPO15042 1029 aaKnown RBP21.53■■□□□ 1.04
LMX1B-204ENST00000561065 PPP2R1AP30153 589 aa21.51■■□□□ 1.03
LMX1B-204ENST00000561065 RC3H1Q5TC82 1133 aaKnown RBP21.51■■□□□ 1.03
LMX1B-204ENST00000561065 RTCBQ9Y3I0 505 aaKnown RBP21.5■■□□□ 1.03
LMX1B-204ENST00000561065 YBX3P16989 372 aaKnown RBP eCLIP21.49■■□□□ 1.03
LMX1B-204ENST00000561065 SLC39A6Q13433 755 aa21.49■■□□□ 1.03
LMX1B-204ENST00000561065 CRKLP46109 303 aaKnown RBP21.48■■□□□ 1.03
LMX1B-204ENST00000561065 GPR162Q16538 588 aa21.48■■□□□ 1.03
LMX1B-204ENST00000561065 RSPH6AQ9H0K4 717 aa21.48■■□□□ 1.03
LMX1B-204ENST00000561065 CD2APQ9Y5K6 639 aa21.48■■□□□ 1.03
LMX1B-204ENST00000561065 RPS6KA4O75676 772 aa21.47■■□□□ 1.03
LMX1B-204ENST00000561065 PELP1Q8IZL8 1130 aaKnown RBP21.47■■□□□ 1.03
LMX1B-204ENST00000561065 ARHGEF1Q92888 912 aaKnown RBP21.47■■□□□ 1.03
LMX1B-204ENST00000561065 TRAPPC3LQ5T215 181 aa21.46■■□□□ 1.03
LMX1B-204ENST00000561065 DNAJC10Q8IXB1 793 aa21.46■■□□□ 1.03
LMX1B-204ENST00000561065 N4BP2Q86UW6 1770 aaPredicted RBP21.46■■□□□ 1.03
LMX1B-204ENST00000561065 MMP10P09238 476 aa21.45■■□□□ 1.02
LMX1B-204ENST00000561065 ADRA2BP18089 450 aa21.45■■□□□ 1.02
LMX1B-204ENST00000561065 PRKAR2BP31323 418 aa21.45■■□□□ 1.02
LMX1B-204ENST00000561065 PHACTR3Q96KR7 559 aa21.45■■□□□ 1.02
LMX1B-204ENST00000561065 GYS1P13807 737 aa21.44■■□□□ 1.02
LMX1B-204ENST00000561065 ZEB1P37275 1124 aaPredicted RBP21.44■■□□□ 1.02
LMX1B-204ENST00000561065 INTS5Q6P9B9 1019 aaKnown RBP21.44■■□□□ 1.02
LMX1B-204ENST00000561065 IL17REQ8NFR9 667 aa21.44■■□□□ 1.02
LMX1B-204ENST00000561065 GAS2L2Q8NHY3 880 aa21.44■■□□□ 1.02
LMX1B-204ENST00000561065 CFAP53Q96M91 514 aa21.44■■□□□ 1.02
LMX1B-204ENST00000561065 C10orf71Q711Q0 1435 aa21.44■■□□□ 1.02
LMX1B-204ENST00000561065 BRCA1P38398 1863 aaKnown RBP21.43■■□□□ 1.02
LMX1B-204ENST00000561065 PXDNLA1KZ92 1463 aa21.43■■□□□ 1.02
LMX1B-204ENST00000561065 CEMIPQ8WUJ3 1361 aa21.42■■□□□ 1.02
LMX1B-204ENST00000561065 SRP68Q9UHB9 627 aaKnown RBP21.42■■□□□ 1.02
LMX1B-204ENST00000561065 DLG5Q8TDM6 1919 aa21.41■■□□□ 1.02
LMX1B-204ENST00000561065 GNAT3A8MTJ3 354 aa21.41■■□□□ 1.02
LMX1B-204ENST00000561065 ZNF784Q8NCA9 323 aaPredicted RBP21.41■■□□□ 1.02
LMX1B-204ENST00000561065 USP42Q9H9J4 1324 aaKnown RBP21.41■■□□□ 1.02
LMX1B-204ENST00000561065 CYP19A1P11511 503 aaPredicted RBP21.4■■□□□ 1.02
LMX1B-204ENST00000561065 RFC4P35249 363 aa21.4■■□□□ 1.02
LMX1B-204ENST00000561065 SOS1Q07889 1333 aaPredicted RBP21.4■■□□□ 1.02
LMX1B-204ENST00000561065 CCDC87Q9NVE4 849 aa21.39■■□□□ 1.01
LMX1B-204ENST00000561065 WWC3Q9ULE0 1092 aa21.39■■□□□ 1.01
LMX1B-204ENST00000561065 U2AF1L5P0DN76 240 aaPredicted RBP21.38■■□□□ 1.01
LMX1B-204ENST00000561065 U2AF1Q01081 240 aaKnown RBP eCLIP21.38■■□□□ 1.01
LMX1B-204ENST00000561065 NLGN1Q8N2Q7 840 aa21.38■■□□□ 1.01
LMX1B-204ENST00000561065 ZBTB1Q9Y2K1 713 aa21.38■■□□□ 1.01
LMX1B-204ENST00000561065 SCN7AQ01118 1682 aa21.38■■□□□ 1.01
LMX1B-204ENST00000561065 NUDCQ9Y266 331 aa21.37■■□□□ 1.01
LMX1B-204ENST00000561065 AFDNP55196 1824 aaKnown RBP21.37■■□□□ 1.01
LMX1B-204ENST00000561065 COL15A1P39059 1388 aa21.37■■□□□ 1.01
LMX1B-204ENST00000561065 TEFQ10587 303 aa21.36■■□□□ 1.01
LMX1B-204ENST00000561065 FKBP8Q14318 412 aa21.36■■□□□ 1.01
LMX1B-204ENST00000561065 NRXN2Q9P2S2 1712 aa21.36■■□□□ 1.01
LMX1B-204ENST00000561065 DDR1Q08345 913 aa21.35■■□□□ 1.01
LMX1B-204ENST00000561065 VSIG10Q8N0Z9 540 aa21.35■■□□□ 1.01
LMX1B-204ENST00000561065 ZNF496Q96IT1 587 aaPredicted RBP21.35■■□□□ 1.01
LMX1B-204ENST00000561065 HEG1Q9ULI3 1381 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms