RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 ZC3H4Q9UPT8 1303 aaKnown RBP13.63□□□□□ -0.23
HERC1-210ENST00000560897 ITGB4P16144 1822 aa13.62□□□□□ -0.23
HERC1-210ENST00000560897 LOC102724428A0A0B4J2F2 783 aa13.62□□□□□ -0.23
HERC1-210ENST00000560897 CTCFP49711 727 aaPredicted RBP13.62□□□□□ -0.23
HERC1-210ENST00000560897 SIK1P57059 783 aa13.62□□□□□ -0.23
HERC1-210ENST00000560897 LINC00116Q8NCU8 138 aa13.62□□□□□ -0.23
HERC1-210ENST00000560897 DCAF5Q96JK2 942 aa13.62□□□□□ -0.23
HERC1-210ENST00000560897 MKRN1Q9UHC7 482 aaKnown RBP13.62□□□□□ -0.23
HERC1-210ENST00000560897 FOXN1O15353 648 aa13.61□□□□□ -0.23
HERC1-210ENST00000560897 TRAPPC3LQ5T215 181 aa13.61□□□□□ -0.23
HERC1-210ENST00000560897 POTEDQ86YR6 584 aa13.61□□□□□ -0.23
HERC1-210ENST00000560897 C4AP0C0L4 1744 aa13.61□□□□□ -0.23
HERC1-210ENST00000560897 SBF1O95248 1867 aa13.6□□□□□ -0.23
HERC1-210ENST00000560897 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
HERC1-210ENST00000560897 MLLT1Q03111 559 aaPredicted RBP13.6□□□□□ -0.23
HERC1-210ENST00000560897 USHBP1Q8N6Y0 703 aa13.6□□□□□ -0.23
HERC1-210ENST00000560897 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
HERC1-210ENST00000560897 TERF2IPQ9NYB0 399 aa13.6□□□□□ -0.23
HERC1-210ENST00000560897 RTCBQ9Y3I0 505 aaKnown RBP13.6□□□□□ -0.23
HERC1-210ENST00000560897 MAP3K19Q56UN5 1328 aa13.6□□□□□ -0.23
HERC1-210ENST00000560897 COG3Q96JB2 828 aa13.59□□□□□ -0.23
HERC1-210ENST00000560897 CD163L1Q9NR16 1453 aa13.59□□□□□ -0.23
HERC1-210ENST00000560897 GLTPD2A6NH11 291 aa13.58□□□□□ -0.24
HERC1-210ENST00000560897 NBPF6Q5VWK0 638 aa13.58□□□□□ -0.24
HERC1-210ENST00000560897 PIGBQ92521 554 aa13.58□□□□□ -0.24
HERC1-210ENST00000560897 NBPF4Q96M43 638 aa13.58□□□□□ -0.24
HERC1-210ENST00000560897 RTL1A6NKG5 1358 aa13.58□□□□□ -0.24
HERC1-210ENST00000560897 ROCK2O75116 1388 aaKnown RBP13.58□□□□□ -0.24
HERC1-210ENST00000560897 MAP2P11137 1827 aaKnown RBP13.57□□□□□ -0.24
HERC1-210ENST00000560897 ABHD8Q96I13 439 aa13.57□□□□□ -0.24
HERC1-210ENST00000560897 KCNA3P22001 575 aa13.56□□□□□ -0.24
HERC1-210ENST00000560897 RFC4P35249 363 aa13.56□□□□□ -0.24
HERC1-210ENST00000560897 TMOD3Q9NYL9 352 aa13.56□□□□□ -0.24
HERC1-210ENST00000560897 LMNB1P20700 586 aa13.55□□□□□ -0.24
HERC1-210ENST00000560897 ITPK1Q13572 414 aa13.55□□□□□ -0.24
HERC1-210ENST00000560897 A0A1W2PP64 1363 aa13.55□□□□□ -0.24
HERC1-210ENST00000560897 CYP27B1O15528 508 aa13.54□□□□□ -0.24
HERC1-210ENST00000560897 LBX1P52954 281 aa13.54□□□□□ -0.24
HERC1-210ENST00000560897 RASSF7Q02833 373 aa13.54□□□□□ -0.24
HERC1-210ENST00000560897 DPY19L2Q6NUT2 758 aa13.54□□□□□ -0.24
HERC1-210ENST00000560897 SLC12A5Q9H2X9 1139 aa13.54□□□□□ -0.24
HERC1-210ENST00000560897 CNTNAP1P78357 1384 aa13.54□□□□□ -0.24
HERC1-210ENST00000560897 TIAM2Q8IVF5 1701 aa13.53□□□□□ -0.24
HERC1-210ENST00000560897 CCDC85CA6NKD9 419 aa13.53□□□□□ -0.24
HERC1-210ENST00000560897 GYS1P13807 737 aa13.53□□□□□ -0.24
HERC1-210ENST00000560897 ARHGEF1Q92888 912 aaKnown RBP13.53□□□□□ -0.24
HERC1-210ENST00000560897 CHRNA5P30532 468 aa13.52□□□□□ -0.25
HERC1-210ENST00000560897 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
HERC1-210ENST00000560897 RRS1Q15050 365 aaKnown RBP13.51□□□□□ -0.25
HERC1-210ENST00000560897 ASAP1Q9ULH1 1129 aa13.51□□□□□ -0.25
HERC1-210ENST00000560897 SPG7Q9UQ90 795 aa13.51□□□□□ -0.25
HERC1-210ENST00000560897 KDM6AO15550 1401 aaPredicted RBP13.5□□□□□ -0.25
HERC1-210ENST00000560897 FBLN1P23142 703 aa13.5□□□□□ -0.25
HERC1-210ENST00000560897 CCDC88AQ3V6T2 1871 aa13.5□□□□□ -0.25
HERC1-210ENST00000560897 NKX1-1Q15270 411 aaPredicted RBP13.49□□□□□ -0.25
HERC1-210ENST00000560897 RC3H1Q5TC82 1133 aaKnown RBP13.49□□□□□ -0.25
HERC1-210ENST00000560897 CFAP44Q96MT7 982 aa13.49□□□□□ -0.25
HERC1-210ENST00000560897 CNTNAP4Q9C0A0 1308 aa13.48□□□□□ -0.25
HERC1-210ENST00000560897 RBM42Q9BTD8 480 aaKnown RBP13.48□□□□□ -0.25
HERC1-210ENST00000560897 WBP1LQ9NX94 342 aa13.48□□□□□ -0.25
HERC1-210ENST00000560897 RPS6KA4O75676 772 aa13.47□□□□□ -0.25
HERC1-210ENST00000560897 VEGFBP49765 207 aa13.47□□□□□ -0.25
HERC1-210ENST00000560897 RGS19P49795 217 aa13.47□□□□□ -0.25
HERC1-210ENST00000560897 INSRP06213 1382 aa13.46□□□□□ -0.25
HERC1-210ENST00000560897 HSPA8P11142 646 aaKnown RBP13.46□□□□□ -0.25
HERC1-210ENST00000560897 MAP2K1Q02750 393 aaPredicted RBP13.46□□□□□ -0.25
HERC1-210ENST00000560897 ATG3Q9NT62 314 aa13.46□□□□□ -0.25
HERC1-210ENST00000560897 FLT4P35916 1363 aa13.45□□□□□ -0.26
HERC1-210ENST00000560897 KDRP35968 1356 aa13.45□□□□□ -0.26
HERC1-210ENST00000560897 TMEM88BA6NKF7 163 aa13.45□□□□□ -0.26
HERC1-210ENST00000560897 HSP90AB2PQ58FF8 381 aa13.45□□□□□ -0.26
HERC1-210ENST00000560897 L3MBTL2Q969R5 705 aa13.45□□□□□ -0.26
HERC1-210ENST00000560897 VIRMAQ69YN4 1812 aaKnown RBP13.45□□□□□ -0.26
HERC1-210ENST00000560897 COL5A3P25940 1745 aaPredicted RBP13.44□□□□□ -0.26
HERC1-210ENST00000560897 POTECB2RU33 542 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 DDR1Q08345 913 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 FKBP8Q14318 412 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 ERFEQ4G0M1 354 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 IFNL2Q8IZJ0 200 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 TTLL6Q8N841 843 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 BEGAINQ9BUH8 593 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 ZNF831Q5JPB2 1677 aa13.44□□□□□ -0.26
HERC1-210ENST00000560897 SRP68Q9UHB9 627 aaKnown RBP13.43□□□□□ -0.26
HERC1-210ENST00000560897 PDE4DIPQ5VU43 2346 aa13.42□□□□□ -0.26
HERC1-210ENST00000560897 USP42Q9H9J4 1324 aaKnown RBP13.42□□□□□ -0.26
HERC1-210ENST00000560897 IQCA1LA6NCM1 817 aa13.42□□□□□ -0.26
HERC1-210ENST00000560897 LDHDQ86WU2 507 aa13.42□□□□□ -0.26
HERC1-210ENST00000560897 KIF24Q5T7B8 1368 aa13.42□□□□□ -0.26
HERC1-210ENST00000560897 PASKQ96RG2 1323 aa13.41□□□□□ -0.26
HERC1-210ENST00000560897 DICER1Q9UPY3 1922 aaKnown RBP13.41□□□□□ -0.26
HERC1-210ENST00000560897 POLRMTO00411 1230 aaKnown RBP13.41□□□□□ -0.26
HERC1-210ENST00000560897 ZPR1O75312 459 aa13.41□□□□□ -0.26
HERC1-210ENST00000560897 PHKG2P15735 406 aa13.41□□□□□ -0.26
HERC1-210ENST00000560897 PUS7Q96PZ0 661 aaKnown RBP13.41□□□□□ -0.26
HERC1-210ENST00000560897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.41□□□□□ -0.26
HERC1-210ENST00000560897 MYH14Q7Z406 1995 aaKnown RBP13.41□□□□□ -0.26
HERC1-210ENST00000560897 DLEC1Q9Y238 1755 aa13.4□□□□□ -0.26
HERC1-210ENST00000560897 NFKBIEO00221 500 aa13.4□□□□□ -0.26
HERC1-210ENST00000560897 POTEIP0CG38 1075 aa13.4□□□□□ -0.26
HERC1-210ENST00000560897 POTEJP0CG39 1038 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms