RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 C10orf71Q711Q0 1435 aa13.3□□□□□ -0.28
HERC1-209ENST00000560519 HSP90AB1P08238 724 aaKnown RBP13.29□□□□□ -0.28
HERC1-209ENST00000560519 ATP6V1AP38606 617 aa13.29□□□□□ -0.28
HERC1-209ENST00000560519 TRIM26Q12899 539 aaPredicted RBP13.29□□□□□ -0.28
HERC1-209ENST00000560519 LINC00116Q8NCU8 138 aa13.29□□□□□ -0.28
HERC1-209ENST00000560519 CARD14Q9BXL6 1004 aa13.29□□□□□ -0.28
HERC1-209ENST00000560519 TNRC6CQ9HCJ0 1690 aaKnown RBP13.28□□□□□ -0.28
HERC1-209ENST00000560519 HSPA6P17066 643 aa13.28□□□□□ -0.28
HERC1-209ENST00000560519 ADRA2BP18089 450 aa13.28□□□□□ -0.28
HERC1-209ENST00000560519 IFFO2Q5TF58 517 aa13.28□□□□□ -0.28
HERC1-209ENST00000560519 ZNF526Q8TF50 670 aaPredicted RBP13.28□□□□□ -0.28
HERC1-209ENST00000560519 EYA1Q99502 592 aa13.28□□□□□ -0.28
HERC1-209ENST00000560519 TIMELESSQ9UNS1 1208 aa13.28□□□□□ -0.28
HERC1-209ENST00000560519 WDR90Q96KV7 1748 aa13.27□□□□□ -0.28
HERC1-209ENST00000560519 AMIGO3Q86WK7 504 aa13.27□□□□□ -0.29
HERC1-209ENST00000560519 RTCBQ9Y3I0 505 aaKnown RBP13.27□□□□□ -0.29
HERC1-209ENST00000560519 MMP10P09238 476 aa13.26□□□□□ -0.29
HERC1-209ENST00000560519 TGFB2P61812 414 aa13.26□□□□□ -0.29
HERC1-209ENST00000560519 CNTNAP4Q9C0A0 1308 aa13.26□□□□□ -0.29
HERC1-209ENST00000560519 ASAP1Q9ULH1 1129 aa13.26□□□□□ -0.29
HERC1-209ENST00000560519 DLEC1Q9Y238 1755 aa13.25□□□□□ -0.29
HERC1-209ENST00000560519 ERVV-2B6SEH9 535 aa13.25□□□□□ -0.29
HERC1-209ENST00000560519 ITPK1Q13572 414 aa13.25□□□□□ -0.29
HERC1-209ENST00000560519 NLGN1Q8N2Q7 840 aa13.25□□□□□ -0.29
HERC1-209ENST00000560519 ATG3Q9NT62 314 aa13.25□□□□□ -0.29
HERC1-209ENST00000560519 POLKQ9UBT6 870 aa13.25□□□□□ -0.29
HERC1-209ENST00000560519 CLSPNQ9HAW4 1339 aa13.24□□□□□ -0.29
HERC1-209ENST00000560519 EIF4A2Q14240 407 aaKnown RBP13.24□□□□□ -0.29
HERC1-209ENST00000560519 TRAPPC3LQ5T215 181 aa13.24□□□□□ -0.29
HERC1-209ENST00000560519 DCAF5Q96JK2 942 aa13.24□□□□□ -0.29
HERC1-209ENST00000560519 CCDC87Q9NVE4 849 aa13.24□□□□□ -0.29
HERC1-209ENST00000560519 KDM6AO15550 1401 aaPredicted RBP13.23□□□□□ -0.29
HERC1-209ENST00000560519 AMOTQ4VCS5 1084 aa13.23□□□□□ -0.29
HERC1-209ENST00000560519 WWC3Q9ULE0 1092 aa13.23□□□□□ -0.29
HERC1-209ENST00000560519 MYH14Q7Z406 1995 aaKnown RBP13.23□□□□□ -0.29
HERC1-209ENST00000560519 ADAMTS7Q9UKP4 1686 aa13.22□□□□□ -0.29
HERC1-209ENST00000560519 RFC4P35249 363 aa13.22□□□□□ -0.29
HERC1-209ENST00000560519 PLEKHO1Q53GL0 409 aaPredicted RBP13.22□□□□□ -0.29
HERC1-209ENST00000560519 RC3H1Q5TC82 1133 aaKnown RBP13.22□□□□□ -0.29
HERC1-209ENST00000560519 TIAM2Q8IVF5 1701 aa13.22□□□□□ -0.29
HERC1-209ENST00000560519 CEP350Q5VT06 3117 aa13.22□□□□□ -0.29
HERC1-209ENST00000560519 C1orf141Q5JVX7 400 aa13.21□□□□□ -0.29
HERC1-209ENST00000560519 SMIM5Q71RC9 77 aa13.21□□□□□ -0.29
HERC1-209ENST00000560519 RBM42Q9BTD8 480 aaKnown RBP13.21□□□□□ -0.29
HERC1-209ENST00000560519 BCS1LQ9Y276 419 aa13.21□□□□□ -0.29
HERC1-209ENST00000560519 PARP3Q9Y6F1 533 aa13.21□□□□□ -0.29
HERC1-209ENST00000560519 MRC1P22897 1456 aa13.21□□□□□ -0.3
HERC1-209ENST00000560519 KIF3CO14782 793 aa13.2□□□□□ -0.3
HERC1-209ENST00000560519 APLP1P51693 650 aa13.2□□□□□ -0.3
HERC1-209ENST00000560519 CABP4P57796 275 aa13.2□□□□□ -0.3
HERC1-209ENST00000560519 POLR3GLQ9BT43 218 aa13.2□□□□□ -0.3
HERC1-209ENST00000560519 UBR2Q8IWV8 1755 aa13.2□□□□□ -0.3
HERC1-209ENST00000560519 NRXN2Q9P2S2 1712 aa13.19□□□□□ -0.3
HERC1-209ENST00000560519 AFDNP55196 1824 aaKnown RBP13.19□□□□□ -0.3
HERC1-209ENST00000560519 RPS6KA4O75676 772 aa13.19□□□□□ -0.3
HERC1-209ENST00000560519 TOMM70O94826 608 aa13.19□□□□□ -0.3
HERC1-209ENST00000560519 GYS1P13807 737 aa13.19□□□□□ -0.3
HERC1-209ENST00000560519 TNNT2P45379 298 aaPredicted RBP13.19□□□□□ -0.3
HERC1-209ENST00000560519 ZNF530Q6P9A1 599 aaPredicted RBP13.19□□□□□ -0.3
HERC1-209ENST00000560519 ARHGEF1Q92888 912 aaKnown RBP13.18□□□□□ -0.3
HERC1-209ENST00000560519 SBF1O95248 1867 aa13.18□□□□□ -0.3
HERC1-209ENST00000560519 FCHSD2O94868 740 aa13.17□□□□□ -0.3
HERC1-209ENST00000560519 MTHFSP49914 203 aa13.17□□□□□ -0.3
HERC1-209ENST00000560519 SCN7AQ01118 1682 aa13.17□□□□□ -0.3
HERC1-209ENST00000560519 KDM2BQ8NHM5 1336 aa13.16□□□□□ -0.3
HERC1-209ENST00000560519 USP42Q9H9J4 1324 aaKnown RBP13.16□□□□□ -0.3
HERC1-209ENST00000560519 A0A0G2JLW4 131 aa13.16□□□□□ -0.3
HERC1-209ENST00000560519 EIF4G2P78344 907 aaKnown RBP eCLIP13.16□□□□□ -0.3
HERC1-209ENST00000560519 ARHGAP27Q6ZUM4 889 aa13.16□□□□□ -0.3
HERC1-209ENST00000560519 C16orf71Q8IYS4 520 aaPredicted RBP13.16□□□□□ -0.3
HERC1-209ENST00000560519 SLC4A9Q96Q91 983 aa13.16□□□□□ -0.3
HERC1-209ENST00000560519 DPEP1P16444 411 aa13.15□□□□□ -0.3
HERC1-209ENST00000560519 CRKLP46109 303 aaKnown RBP13.15□□□□□ -0.3
HERC1-209ENST00000560519 PIM2Q9P1W9 311 aa13.15□□□□□ -0.3
HERC1-209ENST00000560519 ZC3H4Q9UPT8 1303 aaKnown RBP13.14□□□□□ -0.31
HERC1-209ENST00000560519 KCPQ6ZWJ8 1503 aa13.14□□□□□ -0.31
HERC1-209ENST00000560519 PTCD1O75127 700 aaKnown RBP13.13□□□□□ -0.31
HERC1-209ENST00000560519 DALRD3Q5D0E6 543 aaKnown RBP13.13□□□□□ -0.31
HERC1-209ENST00000560519 MORC1Q86VD1 984 aa13.13□□□□□ -0.31
HERC1-209ENST00000560519 RBM46Q8TBY0 533 aaKnown RBP13.13□□□□□ -0.31
HERC1-209ENST00000560519 SIPA1L3O60292 1781 aaPredicted RBP13.12□□□□□ -0.31
HERC1-209ENST00000560519 AKAP4Q5JQC9 854 aa13.12□□□□□ -0.31
HERC1-209ENST00000560519 SULT6B1Q6IMI4 303 aa13.12□□□□□ -0.31
HERC1-209ENST00000560519 PANK3Q9H999 370 aa13.12□□□□□ -0.31
HERC1-209ENST00000560519 ARFGEF2Q9Y6D5 1785 aa13.12□□□□□ -0.31
HERC1-209ENST00000560519 COL15A1P39059 1388 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 CCDC88AQ3V6T2 1871 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 ZPR1O75312 459 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 FSTL1Q12841 308 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 C9orf131Q5VYM1 1079 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 AEBP1Q8IUX7 1158 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 NFATC2IPQ8NCF5 419 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 NMRK2Q9NPI5 230 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 BCORQ6W2J9 1755 aa13.11□□□□□ -0.31
HERC1-209ENST00000560519 DICER1Q9UPY3 1922 aaKnown RBP13.1□□□□□ -0.31
HERC1-209ENST00000560519 KCNA3P22001 575 aa13.1□□□□□ -0.31
HERC1-209ENST00000560519 FKBP8Q14318 412 aa13.1□□□□□ -0.31
HERC1-209ENST00000560519 RNF181Q9P0P0 153 aa13.1□□□□□ -0.31
HERC1-209ENST00000560519 KNSTRNQ9Y448 316 aa13.1□□□□□ -0.31
HERC1-209ENST00000560519 CACNA1SQ13698 1873 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms