RNA–Protein interactions for RNA: ENST00000559941.1

CHRNA3-207, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 4

Gene CHRNA3, Length 592 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-207ENST00000559941 ZNF831Q5JPB2 1677 aa27.7■■■□□ 2.02
CHRNA3-207ENST00000559941 SCN11AQ9UI33 1791 aa27.7■■■□□ 2.02
CHRNA3-207ENST00000559941 DIAPH1O60610 1272 aaKnown RBP27.69■■■□□ 2.02
CHRNA3-207ENST00000559941 ATP6V1AP38606 617 aa27.69■■■□□ 2.02
CHRNA3-207ENST00000559941 CABP4P57796 275 aa27.69■■■□□ 2.02
CHRNA3-207ENST00000559941 ITPK1Q13572 414 aa27.69■■■□□ 2.02
CHRNA3-207ENST00000559941 CNGB1Q14028 1251 aaPredicted RBP27.67■■■□□ 2.02
CHRNA3-207ENST00000559941 AMIGO3Q86WK7 504 aa27.67■■■□□ 2.02
CHRNA3-207ENST00000559941 HMOX1P09601 288 aa27.66■■■□□ 2.02
CHRNA3-207ENST00000559941 COL3A1P02461 1466 aaPredicted RBP27.65■■■□□ 2.02
CHRNA3-207ENST00000559941 VIRMAQ69YN4 1812 aaKnown RBP27.65■■■□□ 2.02
CHRNA3-207ENST00000559941 YY1P25490 414 aa27.65■■■□□ 2.02
CHRNA3-207ENST00000559941 SSFA2P28290 1259 aa27.65■■■□□ 2.02
CHRNA3-207ENST00000559941 AKAP4Q5JQC9 854 aa27.65■■■□□ 2.02
CHRNA3-207ENST00000559941 MSL1Q68DK7 614 aa27.65■■■□□ 2.02
CHRNA3-207ENST00000559941 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.64■■■□□ 2.02
CHRNA3-207ENST00000559941 KLHL34Q8N239 644 aa27.64■■■□□ 2.02
CHRNA3-207ENST00000559941 SLC4A9Q96Q91 983 aa27.64■■■□□ 2.02
CHRNA3-207ENST00000559941 PHF14O94880 888 aa27.63■■■□□ 2.01
CHRNA3-207ENST00000559941 SMIM5Q71RC9 77 aa27.63■■■□□ 2.01
CHRNA3-207ENST00000559941 NFATC2IPQ8NCF5 419 aa27.63■■■□□ 2.01
CHRNA3-207ENST00000559941 RBM42Q9BTD8 480 aaKnown RBP27.63■■■□□ 2.01
CHRNA3-207ENST00000559941 COL5A3P25940 1745 aaPredicted RBP27.63■■■□□ 2.01
CHRNA3-207ENST00000559941 GNPATO15228 680 aa27.61■■■□□ 2.01
CHRNA3-207ENST00000559941 CHD4Q14839 1912 aa27.6■■■□□ 2.01
CHRNA3-207ENST00000559941 RC3H1Q5TC82 1133 aaKnown RBP27.58■■■□□ 2.01
CHRNA3-207ENST00000559941 MYH14Q7Z406 1995 aaKnown RBP27.57■■■□□ 2
CHRNA3-207ENST00000559941 MTHFSDQ2M296 383 aaKnown RBP27.57■■■□□ 2
CHRNA3-207ENST00000559941 NLGN2Q8NFZ4 835 aa27.57■■■□□ 2
CHRNA3-207ENST00000559941 LGR6Q9HBX8 967 aa27.57■■■□□ 2
CHRNA3-207ENST00000559941 ADAMTS7Q9UKP4 1686 aa27.56■■■□□ 2
CHRNA3-207ENST00000559941 UTRNP46939 3433 aa27.56■■■□□ 2
CHRNA3-207ENST00000559941 RNMTO43148 476 aaKnown RBP27.56■■■□□ 2
CHRNA3-207ENST00000559941 SLC52A2Q9HAB3 445 aa27.56■■■□□ 2
CHRNA3-207ENST00000559941 U2SURPO15042 1029 aaKnown RBP27.55■■■□□ 2
CHRNA3-207ENST00000559941 RTCBQ9Y3I0 505 aaKnown RBP27.55■■■□□ 2
CHRNA3-207ENST00000559941 MRC1P22897 1456 aa27.55■■■□□ 2
CHRNA3-207ENST00000559941 PTCD1O75127 700 aaKnown RBP27.54■■■□□ 2
CHRNA3-207ENST00000559941 CICQ96RK0 1608 aaPredicted RBP27.54■■■□□ 2
CHRNA3-207ENST00000559941 CNTNAP4Q9C0A0 1308 aa27.54■■■□□ 2
CHRNA3-207ENST00000559941 GPR162Q16538 588 aa27.53■■■□□ 2
CHRNA3-207ENST00000559941 CD2APQ9Y5K6 639 aa27.53■■■□□ 2
CHRNA3-207ENST00000559941 TJP1Q07157 1748 aa27.53■■■□□ 2
CHRNA3-207ENST00000559941 TRAPPC3LQ5T215 181 aa27.52■■■□□ 2
CHRNA3-207ENST00000559941 CFAP53Q96M91 514 aa27.52■■■□□ 2
CHRNA3-207ENST00000559941 RPS6KA4O75676 772 aa27.5■■□□□ 1.99
CHRNA3-207ENST00000559941 ADRA2BP18089 450 aa27.5■■□□□ 1.99
CHRNA3-207ENST00000559941 PPP2R1AP30153 589 aa27.5■■□□□ 1.99
CHRNA3-207ENST00000559941 ARHGEF1Q92888 912 aaKnown RBP27.48■■□□□ 1.99
CHRNA3-207ENST00000559941 PELP1Q8IZL8 1130 aaKnown RBP27.47■■□□□ 1.99
CHRNA3-207ENST00000559941 CRKLP46109 303 aaKnown RBP27.46■■□□□ 1.99
CHRNA3-207ENST00000559941 GAS2L2Q8NHY3 880 aa27.46■■□□□ 1.99
CHRNA3-207ENST00000559941 C4AP0C0L4 1744 aa27.46■■□□□ 1.99
CHRNA3-207ENST00000559941 SLC39A6Q13433 755 aa27.45■■□□□ 1.98
CHRNA3-207ENST00000559941 NUDCQ9Y266 331 aa27.45■■□□□ 1.98
CHRNA3-207ENST00000559941 NLGN1Q8N2Q7 840 aa27.44■■□□□ 1.98
CHRNA3-207ENST00000559941 KCPQ6ZWJ8 1503 aa27.43■■□□□ 1.98
CHRNA3-207ENST00000559941 GOLGB1Q14789 3259 aaKnown RBP27.43■■□□□ 1.98
CHRNA3-207ENST00000559941 GNAT3A8MTJ3 354 aa27.43■■□□□ 1.98
CHRNA3-207ENST00000559941 RFC4P35249 363 aa27.43■■□□□ 1.98
CHRNA3-207ENST00000559941 RSPH6AQ9H0K4 717 aa27.43■■□□□ 1.98
CHRNA3-207ENST00000559941 UBR2Q8IWV8 1755 aa27.43■■□□□ 1.98
CHRNA3-207ENST00000559941 MMP10P09238 476 aa27.42■■□□□ 1.98
CHRNA3-207ENST00000559941 DNAJC10Q8IXB1 793 aa27.42■■□□□ 1.98
CHRNA3-207ENST00000559941 SIPA1L3O60292 1781 aaPredicted RBP27.41■■□□□ 1.98
CHRNA3-207ENST00000559941 GYS1P13807 737 aa27.41■■□□□ 1.98
CHRNA3-207ENST00000559941 YBX3P16989 372 aaKnown RBP eCLIP27.41■■□□□ 1.98
CHRNA3-207ENST00000559941 PRKAR2BP31323 418 aa27.41■■□□□ 1.98
CHRNA3-207ENST00000559941 IL17REQ8NFR9 667 aa27.41■■□□□ 1.98
CHRNA3-207ENST00000559941 GRIN3BO60391 1043 aa27.4■■□□□ 1.98
CHRNA3-207ENST00000559941 INTS5Q6P9B9 1019 aaKnown RBP27.4■■□□□ 1.98
CHRNA3-207ENST00000559941 PHACTR3Q96KR7 559 aa27.4■■□□□ 1.98
CHRNA3-207ENST00000559941 KIF13BQ9NQT8 1826 aa27.39■■□□□ 1.98
CHRNA3-207ENST00000559941 U2AF1L5P0DN76 240 aaPredicted RBP27.38■■□□□ 1.97
CHRNA3-207ENST00000559941 U2AF1Q01081 240 aaKnown RBP eCLIP27.38■■□□□ 1.97
CHRNA3-207ENST00000559941 VSIG10Q8N0Z9 540 aa27.38■■□□□ 1.97
CHRNA3-207ENST00000559941 CYP19A1P11511 503 aaPredicted RBP27.37■■□□□ 1.97
CHRNA3-207ENST00000559941 TEFQ10587 303 aa27.37■■□□□ 1.97
CHRNA3-207ENST00000559941 CCDC87Q9NVE4 849 aa27.37■■□□□ 1.97
CHRNA3-207ENST00000559941 FCHSD2O94868 740 aa27.36■■□□□ 1.97
CHRNA3-207ENST00000559941 ZNF784Q8NCA9 323 aaPredicted RBP27.36■■□□□ 1.97
CHRNA3-207ENST00000559941 USP42Q9H9J4 1324 aaKnown RBP27.35■■□□□ 1.97
CHRNA3-207ENST00000559941 CEMIPQ8WUJ3 1361 aa27.35■■□□□ 1.97
CHRNA3-207ENST00000559941 TTC5Q8N0Z6 440 aa27.34■■□□□ 1.97
CHRNA3-207ENST00000559941 SRP68Q9UHB9 627 aaKnown RBP27.34■■□□□ 1.97
CHRNA3-207ENST00000559941 SOS1Q07889 1333 aaPredicted RBP27.33■■□□□ 1.97
CHRNA3-207ENST00000559941 ZNF790Q6PG37 636 aa27.32■■□□□ 1.96
CHRNA3-207ENST00000559941 KIAA1551Q9HCM1 1747 aa27.32■■□□□ 1.96
CHRNA3-207ENST00000559941 PARP3Q9Y6F1 533 aa27.31■■□□□ 1.96
CHRNA3-207ENST00000559941 ZNF496Q96IT1 587 aaPredicted RBP27.3■■□□□ 1.96
CHRNA3-207ENST00000559941 C10orf71Q711Q0 1435 aa27.3■■□□□ 1.96
CHRNA3-207ENST00000559941 N4BP2Q86UW6 1770 aaPredicted RBP27.3■■□□□ 1.96
CHRNA3-207ENST00000559941 TGFB2P61812 414 aa27.29■■□□□ 1.96
CHRNA3-207ENST00000559941 FKBP8Q14318 412 aa27.29■■□□□ 1.96
CHRNA3-207ENST00000559941 ZBTB1Q9Y2K1 713 aa27.29■■□□□ 1.96
CHRNA3-207ENST00000559941 HEG1Q9ULI3 1381 aa27.28■■□□□ 1.96
CHRNA3-207ENST00000559941 PXDNLA1KZ92 1463 aa27.27■■□□□ 1.96
CHRNA3-207ENST00000559941 ZPR1O75312 459 aa27.27■■□□□ 1.96
CHRNA3-207ENST00000559941 STARD3NLO95772 234 aa27.27■■□□□ 1.96
CHRNA3-207ENST00000559941 COL15A1P39059 1388 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms