RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 PLEKHG2Q9H7P9 1386 aa24.12■■□□□ 1.45
HDDC3-205ENST00000559898 ATP6V1AP38606 617 aa24.11■■□□□ 1.45
HDDC3-205ENST00000559898 DCAF5Q96JK2 942 aa24.11■■□□□ 1.45
HDDC3-205ENST00000559898 AK7Q96M32 723 aa24.11■■□□□ 1.45
HDDC3-205ENST00000559898 ERVV-2B6SEH9 535 aa24.1■■□□□ 1.45
HDDC3-205ENST00000559898 YY1P25490 414 aa24.1■■□□□ 1.45
HDDC3-205ENST00000559898 POLD1P28340 1107 aa24.1■■□□□ 1.45
HDDC3-205ENST00000559898 MAP3K5Q99683 1374 aa24.1■■□□□ 1.45
HDDC3-205ENST00000559898 UTRNP46939 3433 aa24.1■■□□□ 1.45
HDDC3-205ENST00000559898 AMOTQ4VCS5 1084 aa24.09■■□□□ 1.45
HDDC3-205ENST00000559898 COL5A3P25940 1745 aaPredicted RBP24.09■■□□□ 1.45
HDDC3-205ENST00000559898 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.08■■□□□ 1.45
HDDC3-205ENST00000559898 RBM42Q9BTD8 480 aaKnown RBP24.08■■□□□ 1.45
HDDC3-205ENST00000559898 LGR6Q9HBX8 967 aa24.07■■□□□ 1.44
HDDC3-205ENST00000559898 MYH14Q7Z406 1995 aaKnown RBP24.07■■□□□ 1.44
HDDC3-205ENST00000559898 NPC1L1Q9UHC9 1359 aa24.06■■□□□ 1.44
HDDC3-205ENST00000559898 CABP4P57796 275 aa24.06■■□□□ 1.44
HDDC3-205ENST00000559898 NFATC2IPQ8NCF5 419 aa24.06■■□□□ 1.44
HDDC3-205ENST00000559898 DIAPH1O60610 1272 aaKnown RBP24.05■■□□□ 1.44
HDDC3-205ENST00000559898 HSP90AB1P08238 724 aaKnown RBP24.05■■□□□ 1.44
HDDC3-205ENST00000559898 C1orf141Q5JVX7 400 aa24.05■■□□□ 1.44
HDDC3-205ENST00000559898 ZNF831Q5JPB2 1677 aa24.05■■□□□ 1.44
HDDC3-205ENST00000559898 TJP1Q07157 1748 aa24.04■■□□□ 1.44
HDDC3-205ENST00000559898 GNPATO15228 680 aa24.04■■□□□ 1.44
HDDC3-205ENST00000559898 DCAF8L1A6NGE4 600 aa24.03■■□□□ 1.44
HDDC3-205ENST00000559898 MTHFSDQ2M296 383 aaKnown RBP24.03■■□□□ 1.44
HDDC3-205ENST00000559898 PTCD1O75127 700 aaKnown RBP24.02■■□□□ 1.44
HDDC3-205ENST00000559898 FLAD1Q8NFF5 587 aa24.01■■□□□ 1.43
HDDC3-205ENST00000559898 ADAMTS7Q9UKP4 1686 aa24■■□□□ 1.43
HDDC3-205ENST00000559898 SSFA2P28290 1259 aa24■■□□□ 1.43
HDDC3-205ENST00000559898 AKAP4Q5JQC9 854 aa24■■□□□ 1.43
HDDC3-205ENST00000559898 CHD4Q14839 1912 aa24■■□□□ 1.43
HDDC3-205ENST00000559898 GOLGB1Q14789 3259 aaKnown RBP23.99■■□□□ 1.43
HDDC3-205ENST00000559898 PELP1Q8IZL8 1130 aaKnown RBP23.99■■□□□ 1.43
HDDC3-205ENST00000559898 C4AP0C0L4 1744 aa23.98■■□□□ 1.43
HDDC3-205ENST00000559898 U2SURPO15042 1029 aaKnown RBP23.98■■□□□ 1.43
HDDC3-205ENST00000559898 RNMTO43148 476 aaKnown RBP23.98■■□□□ 1.43
HDDC3-205ENST00000559898 SLC39A6Q13433 755 aa23.98■■□□□ 1.43
HDDC3-205ENST00000559898 GPR162Q16538 588 aa23.98■■□□□ 1.43
HDDC3-205ENST00000559898 YBX3P16989 372 aaKnown RBP eCLIP23.97■■□□□ 1.437e-9■□□□□ 10.7
HDDC3-205ENST00000559898 MRC1P22897 1456 aa23.97■■□□□ 1.43
HDDC3-205ENST00000559898 SLC52A2Q9HAB3 445 aa23.96■■□□□ 1.43
HDDC3-205ENST00000559898 WWC3Q9ULE0 1092 aa23.95■■□□□ 1.42
HDDC3-205ENST00000559898 ARHGEF1Q92888 912 aaKnown RBP23.94■■□□□ 1.42
HDDC3-205ENST00000559898 CICQ96RK0 1608 aaPredicted RBP23.94■■□□□ 1.42
HDDC3-205ENST00000559898 KCPQ6ZWJ8 1503 aa23.94■■□□□ 1.42
HDDC3-205ENST00000559898 CNTNAP4Q9C0A0 1308 aa23.93■■□□□ 1.42
HDDC3-205ENST00000559898 PPP2R1AP30153 589 aa23.93■■□□□ 1.42
HDDC3-205ENST00000559898 CRKLP46109 303 aaKnown RBP23.92■■□□□ 1.42
HDDC3-205ENST00000559898 RC3H1Q5TC82 1133 aaKnown RBP23.92■■□□□ 1.42
HDDC3-205ENST00000559898 DNAJC10Q8IXB1 793 aa23.92■■□□□ 1.42
HDDC3-205ENST00000559898 PHACTR3Q96KR7 559 aa23.92■■□□□ 1.42
HDDC3-205ENST00000559898 RTCBQ9Y3I0 505 aaKnown RBP23.92■■□□□ 1.42
HDDC3-205ENST00000559898 RPS6KA4O75676 772 aa23.91■■□□□ 1.42
HDDC3-205ENST00000559898 TRAPPC3LQ5T215 181 aa23.91■■□□□ 1.42
HDDC3-205ENST00000559898 KIAA1551Q9HCM1 1747 aa23.9■■□□□ 1.42
HDDC3-205ENST00000559898 SIPA1L3O60292 1781 aaPredicted RBP23.9■■□□□ 1.42
HDDC3-205ENST00000559898 UBR2Q8IWV8 1755 aa23.9■■□□□ 1.42
HDDC3-205ENST00000559898 MMP10P09238 476 aa23.89■■□□□ 1.41
HDDC3-205ENST00000559898 HMGB2P26583 209 aaKnown RBP23.89■■□□□ 1.41
HDDC3-205ENST00000559898 INTS5Q6P9B9 1019 aaKnown RBP23.89■■□□□ 1.41
HDDC3-205ENST00000559898 IL17REQ8NFR9 667 aa23.89■■□□□ 1.41
HDDC3-205ENST00000559898 RSPH6AQ9H0K4 717 aa23.89■■□□□ 1.41
HDDC3-205ENST00000559898 SRP68Q9UHB9 627 aaKnown RBP23.89■■□□□ 1.41
HDDC3-205ENST00000559898 CD2APQ9Y5K6 639 aa23.89■■□□□ 1.41
HDDC3-205ENST00000559898 GYS1P13807 737 aa23.88■■□□□ 1.41
HDDC3-205ENST00000559898 ZNF784Q8NCA9 323 aaPredicted RBP23.88■■□□□ 1.41
HDDC3-205ENST00000559898 N4BP2Q86UW6 1770 aaPredicted RBP23.88■■□□□ 1.41
HDDC3-205ENST00000559898 PRKAR2BP31323 418 aa23.87■■□□□ 1.41
HDDC3-205ENST00000559898 KIF13BQ9NQT8 1826 aa23.86■■□□□ 1.41
HDDC3-205ENST00000559898 CYP19A1P11511 503 aaPredicted RBP23.83■■□□□ 1.41
HDDC3-205ENST00000559898 RFC4P35249 363 aa23.83■■□□□ 1.41
HDDC3-205ENST00000559898 ADRA2BP18089 450 aa23.82■■□□□ 1.4
HDDC3-205ENST00000559898 FKBP8Q14318 412 aa23.82■■□□□ 1.4
HDDC3-205ENST00000559898 CFAP53Q96M91 514 aa23.82■■□□□ 1.4
HDDC3-205ENST00000559898 GNAT3A8MTJ3 354 aa23.81■■□□□ 1.4
HDDC3-205ENST00000559898 KCNQ3O43525 872 aa23.81■■□□□ 1.4
HDDC3-205ENST00000559898 ZBTB1Q9Y2K1 713 aa23.81■■□□□ 1.4
HDDC3-205ENST00000559898 USP42Q9H9J4 1324 aaKnown RBP23.81■■□□□ 1.4
HDDC3-205ENST00000559898 PXDNLA1KZ92 1463 aa23.81■■□□□ 1.4
HDDC3-205ENST00000559898 U2AF1L5P0DN76 240 aaPredicted RBP23.8■■□□□ 1.4
HDDC3-205ENST00000559898 U2AF1Q01081 240 aaKnown RBP eCLIP23.8■■□□□ 1.4
HDDC3-205ENST00000559898 GAS2L2Q8NHY3 880 aa23.8■■□□□ 1.4
HDDC3-205ENST00000559898 CCDC87Q9NVE4 849 aa23.8■■□□□ 1.4
HDDC3-205ENST00000559898 SOS1Q07889 1333 aaPredicted RBP23.8■■□□□ 1.4
HDDC3-205ENST00000559898 DDR1Q08345 913 aa23.79■■□□□ 1.4
HDDC3-205ENST00000559898 NLGN1Q8N2Q7 840 aa23.79■■□□□ 1.4
HDDC3-205ENST00000559898 C10orf71Q711Q0 1435 aa23.78■■□□□ 1.4
HDDC3-205ENST00000559898 ZNF496Q96IT1 587 aaPredicted RBP23.78■■□□□ 1.4
HDDC3-205ENST00000559898 CEMIPQ8WUJ3 1361 aa23.78■■□□□ 1.4
HDDC3-205ENST00000559898 A0A0G2JLW4 131 aa23.76■■□□□ 1.39
HDDC3-205ENST00000559898 DCTN1Q14203 1278 aa23.76■■□□□ 1.39
HDDC3-205ENST00000559898 USPL1Q5W0Q7 1092 aa23.76■■□□□ 1.39
HDDC3-205ENST00000559898 MCM10Q7L590 875 aa23.76■■□□□ 1.39
HDDC3-205ENST00000559898 DLG5Q8TDM6 1919 aa23.75■■□□□ 1.39
HDDC3-205ENST00000559898 TEFQ10587 303 aa23.75■■□□□ 1.39
HDDC3-205ENST00000559898 ZNF790Q6PG37 636 aa23.75■■□□□ 1.39
HDDC3-205ENST00000559898 BRCA1P38398 1863 aaKnown RBP23.75■■□□□ 1.39
HDDC3-205ENST00000559898 GRIN3BO60391 1043 aa23.74■■□□□ 1.39
HDDC3-205ENST00000559898 CANXP27824 592 aaKnown RBP23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms