RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-215ENST00000559774 BTBD11A6QL63 1104 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 KCNQ2O43526 872 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 TRIM37O94972 964 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 ZNF853P0CG23 659 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 HNRNPUQ00839 825 aaKnown RBP eCLIP11.33□□□□□ -0.6
LRRC28-215ENST00000559774 ZNF790Q6PG37 636 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 ACSBG1Q96GR2 724 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 ZBED9Q6R2W3 1325 aa11.33□□□□□ -0.6
LRRC28-215ENST00000559774 SCN11AQ9UI33 1791 aa11.32□□□□□ -0.6
LRRC28-215ENST00000559774 EP400Q96L91 3159 aa11.32□□□□□ -0.6
LRRC28-215ENST00000559774 GOLGA2Q08379 1002 aa11.32□□□□□ -0.6
LRRC28-215ENST00000559774 SF3B2Q13435 895 aaKnown RBP11.32□□□□□ -0.6
LRRC28-215ENST00000559774 POTEDQ86YR6 584 aa11.32□□□□□ -0.6
LRRC28-215ENST00000559774 MYH16Q9H6N6 1097 aa11.32□□□□□ -0.6
LRRC28-215ENST00000559774 NHSQ6T4R5 1651 aa11.32□□□□□ -0.6
LRRC28-215ENST00000559774 E9PSI1 815 aa11.31□□□□□ -0.6
LRRC28-215ENST00000559774 TTC5Q8N0Z6 440 aa11.31□□□□□ -0.6
LRRC28-215ENST00000559774 VSIG10Q8N0Z9 540 aa11.31□□□□□ -0.6
LRRC28-215ENST00000559774 THUMPD2Q9BTF0 503 aaKnown RBP11.31□□□□□ -0.6
LRRC28-215ENST00000559774 CHMP4AQ9BY43 222 aa11.31□□□□□ -0.6
LRRC28-215ENST00000559774 ATG3Q9NT62 314 aa11.31□□□□□ -0.6
LRRC28-215ENST00000559774 SOS1Q07889 1333 aaPredicted RBP11.31□□□□□ -0.6
LRRC28-215ENST00000559774 APBA3O96018 575 aa11.3□□□□□ -0.6
LRRC28-215ENST00000559774 BAG6P46379 1132 aa11.3□□□□□ -0.6
LRRC28-215ENST00000559774 SLC27A3Q5K4L6 730 aa11.3□□□□□ -0.6
LRRC28-215ENST00000559774 ILDR2Q71H61 639 aa11.3□□□□□ -0.6
LRRC28-215ENST00000559774 TEX13AQ9BXU3 409 aaPredicted RBP11.3□□□□□ -0.6
LRRC28-215ENST00000559774 TSPYL4Q9UJ04 414 aa11.3□□□□□ -0.6
LRRC28-215ENST00000559774 DOT1LQ8TEK3 1739 aa11.29□□□□□ -0.6
LRRC28-215ENST00000559774 TOGARAM1Q9Y4F4 1720 aa11.29□□□□□ -0.6
LRRC28-215ENST00000559774 HOXB7P09629 217 aa11.29□□□□□ -0.6
LRRC28-215ENST00000559774 UPF1Q92900 1129 aaKnown RBP eCLIP11.29□□□□□ -0.6
LRRC28-215ENST00000559774 FMNL2Q96PY5 1086 aa11.29□□□□□ -0.6
LRRC28-215ENST00000559774 ASAP1Q9ULH1 1129 aa11.29□□□□□ -0.6
LRRC28-215ENST00000559774 SALL2Q9Y467 1007 aaPredicted RBP11.29□□□□□ -0.6
LRRC28-215ENST00000559774 DLG5Q8TDM6 1919 aa11.29□□□□□ -0.6
LRRC28-215ENST00000559774 PALLDQ8WX93 1383 aa11.28□□□□□ -0.6
LRRC28-215ENST00000559774 HEG1Q9ULI3 1381 aa11.28□□□□□ -0.6
LRRC28-215ENST00000559774 EIF4A1P60842 406 aaKnown RBP11.28□□□□□ -0.6
LRRC28-215ENST00000559774 SLFN5Q08AF3 891 aa11.28□□□□□ -0.6
LRRC28-215ENST00000559774 PTF1AQ7RTS3 328 aa11.28□□□□□ -0.6
LRRC28-215ENST00000559774 TRMT2AQ8IZ69 625 aaKnown RBP11.28□□□□□ -0.6
LRRC28-215ENST00000559774 MBIPQ9NS73 344 aa11.28□□□□□ -0.6
LRRC28-215ENST00000559774 SBF2Q86WG5 1849 aa11.28□□□□□ -0.6
LRRC28-215ENST00000559774 LOC102724428A0A0B4J2F2 783 aa11.27□□□□□ -0.61
LRRC28-215ENST00000559774 SNRPA1P09661 255 aaKnown RBP11.27□□□□□ -0.61
LRRC28-215ENST00000559774 SIK1P57059 783 aa11.27□□□□□ -0.61
LRRC28-215ENST00000559774 SLC39A6Q13433 755 aa11.27□□□□□ -0.61
LRRC28-215ENST00000559774 SIPA1L3O60292 1781 aaPredicted RBP11.26□□□□□ -0.61
LRRC28-215ENST00000559774 CT47B1P0C2W7 299 aaPredicted RBP11.26□□□□□ -0.61
LRRC28-215ENST00000559774 ZNF428Q96B54 188 aa11.26□□□□□ -0.61
LRRC28-215ENST00000559774 ZNF496Q96IT1 587 aaPredicted RBP11.26□□□□□ -0.61
LRRC28-215ENST00000559774 CAMKK2Q96RR4 588 aa11.26□□□□□ -0.61
LRRC28-215ENST00000559774 LAS1LQ9Y4W2 734 aaKnown RBP11.26□□□□□ -0.61
LRRC28-215ENST00000559774 ITGB4P16144 1822 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 PAPPAQ13219 1627 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 ZNF831Q5JPB2 1677 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 PTCD1O75127 700 aaKnown RBP11.25□□□□□ -0.61
LRRC28-215ENST00000559774 GIGYF1O75420 1035 aaPredicted RBP11.25□□□□□ -0.61
LRRC28-215ENST00000559774 STARD3NLO95772 234 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 TXNRD1Q16881 649 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 MIS18AQ9NYP9 233 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 FANCIQ9NVI1 1328 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 RGPD3A6NKT7 1758 aaPredicted RBP11.25□□□□□ -0.61
LRRC28-215ENST00000559774 RGPD4Q7Z3J3 1758 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 KCPQ6ZWJ8 1503 aa11.25□□□□□ -0.61
LRRC28-215ENST00000559774 KCNQ3O43525 872 aa11.24□□□□□ -0.61
LRRC28-215ENST00000559774 ATP6V1AP38606 617 aa11.24□□□□□ -0.61
LRRC28-215ENST00000559774 RC3H1Q5TC82 1133 aaKnown RBP11.24□□□□□ -0.61
LRRC28-215ENST00000559774 DUSP27Q5VZP5 1158 aa11.24□□□□□ -0.61
LRRC28-215ENST00000559774 PROM2Q8N271 834 aa11.24□□□□□ -0.61
LRRC28-215ENST00000559774 RBM42Q9BTD8 480 aaKnown RBP11.24□□□□□ -0.61
LRRC28-215ENST00000559774 SPINK5Q9NQ38 1064 aaPredicted RBP11.24□□□□□ -0.61
LRRC28-215ENST00000559774 CCNL1Q9UK58 526 aaPredicted RBP11.24□□□□□ -0.61
LRRC28-215ENST00000559774 TNS1Q9HBL0 1735 aaKnown RBP11.23□□□□□ -0.61
LRRC28-215ENST00000559774 BTAF1O14981 1849 aa11.23□□□□□ -0.61
LRRC28-215ENST00000559774 SENP3-EIF4A1A0A087X0R7 540 aa11.23□□□□□ -0.61
LRRC28-215ENST00000559774 EN1Q05925 392 aaPredicted RBP11.23□□□□□ -0.61
LRRC28-215ENST00000559774 SLC4A9Q96Q91 983 aa11.23□□□□□ -0.61
LRRC28-215ENST00000559774 ERBB4Q15303 1308 aa11.23□□□□□ -0.61
LRRC28-215ENST00000559774 CICQ96RK0 1608 aaPredicted RBP11.23□□□□□ -0.61
LRRC28-215ENST00000559774 KDM3BQ7LBC6 1761 aa11.22□□□□□ -0.61
LRRC28-215ENST00000559774 UBR2Q8IWV8 1755 aa11.22□□□□□ -0.61
LRRC28-215ENST00000559774 TSR2Q969E8 191 aaKnown RBP11.22□□□□□ -0.61
LRRC28-215ENST00000559774 CDCA7LQ96GN5 454 aa11.22□□□□□ -0.61
LRRC28-215ENST00000559774 CNTNAP4Q9C0A0 1308 aa11.21□□□□□ -0.61
LRRC28-215ENST00000559774 CYP19A1P11511 503 aaPredicted RBP11.21□□□□□ -0.61
LRRC28-215ENST00000559774 EZH2Q15910 746 aaKnown RBP11.21□□□□□ -0.61
LRRC28-215ENST00000559774 C8orf58Q8NAV2 365 aa11.21□□□□□ -0.61
LRRC28-215ENST00000559774 LRRC4BQ9NT99 713 aa11.21□□□□□ -0.61
LRRC28-215ENST00000559774 VIRMAQ69YN4 1812 aaKnown RBP11.21□□□□□ -0.62
LRRC28-215ENST00000559774 LY75O60449 1722 aa11.21□□□□□ -0.62
LRRC28-215ENST00000559774 SOCS7O14512 581 aa11.2□□□□□ -0.62
LRRC28-215ENST00000559774 VAMP4O75379 141 aa11.2□□□□□ -0.62
LRRC28-215ENST00000559774 EXOSC9Q06265 439 aaKnown RBP11.2□□□□□ -0.62
LRRC28-215ENST00000559774 ITPK1Q13572 414 aa11.2□□□□□ -0.62
LRRC28-215ENST00000559774 TWISTNBQ3B726 338 aaPredicted RBP11.2□□□□□ -0.62
LRRC28-215ENST00000559774 CCDC30Q5VVM6 783 aa11.2□□□□□ -0.62
LRRC28-215ENST00000559774 DEFB132Q7Z7B7 95 aa11.2□□□□□ -0.62
LRRC28-215ENST00000559774 DNAJC10Q8IXB1 793 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms