RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 AFF2P51816 1311 aa22.36■■□□□ 1.17
CHRNA3-206ENST00000559658 DCAF5Q96JK2 942 aa22.36■■□□□ 1.17
CHRNA3-206ENST00000559658 GLI3P10071 1580 aa22.35■■□□□ 1.17
CHRNA3-206ENST00000559658 CT47B1P0C2W7 299 aaPredicted RBP22.35■■□□□ 1.17
CHRNA3-206ENST00000559658 SLC52A2Q9HAB3 445 aa22.35■■□□□ 1.17
CHRNA3-206ENST00000559658 BTBD11A6QL63 1104 aa22.34■■□□□ 1.17
CHRNA3-206ENST00000559658 VPS72Q15906 364 aa22.34■■□□□ 1.17
CHRNA3-206ENST00000559658 NFATC2IPQ8NCF5 419 aa22.34■■□□□ 1.17
CHRNA3-206ENST00000559658 SMC4Q9NTJ3 1288 aa22.34■■□□□ 1.17
CHRNA3-206ENST00000559658 FRAT1Q92837 279 aaPredicted RBP22.34■■□□□ 1.17
CHRNA3-206ENST00000559658 SLC39A6Q13433 755 aa22.33■■□□□ 1.17
CHRNA3-206ENST00000559658 FAM98CQ17RN3 349 aaKnown RBP22.33■■□□□ 1.17
CHRNA3-206ENST00000559658 DOT1LQ8TEK3 1739 aa22.33■■□□□ 1.16
CHRNA3-206ENST00000559658 C5P01031 1676 aa22.32■■□□□ 1.16
CHRNA3-206ENST00000559658 NKX1-1Q15270 411 aaPredicted RBP22.32■■□□□ 1.16
CHRNA3-206ENST00000559658 ITGB4P16144 1822 aa22.32■■□□□ 1.16
CHRNA3-206ENST00000559658 THRAP3Q9Y2W1 955 aaKnown RBP22.32■■□□□ 1.16
CHRNA3-206ENST00000559658 EIF4A1P60842 406 aaKnown RBP22.31■■□□□ 1.16
CHRNA3-206ENST00000559658 PAPPAQ13219 1627 aa22.31■■□□□ 1.16
CHRNA3-206ENST00000559658 HSP90AB1P08238 724 aaKnown RBP22.3■■□□□ 1.16
CHRNA3-206ENST00000559658 BARGINQ6ZT62 677 aa22.3■■□□□ 1.16
CHRNA3-206ENST00000559658 BABAM1Q9NWV8 329 aa22.3■■□□□ 1.16
CHRNA3-206ENST00000559658 THSD7AQ9UPZ6 1657 aa22.3■■□□□ 1.16
CHRNA3-206ENST00000559658 EXOC6Q8TAG9 804 aa22.29■■□□□ 1.16
CHRNA3-206ENST00000559658 PRAMEF22A3QJZ6 481 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 EXOC5O00471 708 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 NECTIN2Q92692 538 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 CRBNQ96SW2 442 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 ATRNO75882 1429 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 RLBP1P12271 317 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 CABP4P57796 275 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 DDB1Q16531 1140 aa22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 MRPL50Q8N5N7 158 aaKnown RBP22.28■■□□□ 1.16
CHRNA3-206ENST00000559658 UBR2Q8IWV8 1755 aa22.27■■□□□ 1.16
CHRNA3-206ENST00000559658 CANXP27824 592 aaKnown RBP22.27■■□□□ 1.16
CHRNA3-206ENST00000559658 ALDH1L2Q3SY69 923 aa22.27■■□□□ 1.16
CHRNA3-206ENST00000559658 PANK1Q8TE04 598 aa22.27■■□□□ 1.16
CHRNA3-206ENST00000559658 NOB1Q9ULX3 412 aaKnown RBP22.27■■□□□ 1.16
CHRNA3-206ENST00000559658 MARCH10Q8NA82 808 aaPredicted RBP22.26■■□□□ 1.15
CHRNA3-206ENST00000559658 ZNF790Q6PG37 636 aa22.26■■□□□ 1.15
CHRNA3-206ENST00000559658 CLUAP1Q96AJ1 413 aa22.26■■□□□ 1.15
CHRNA3-206ENST00000559658 CDCA7Q9BWT1 371 aaPredicted RBP22.26■■□□□ 1.15
CHRNA3-206ENST00000559658 HEG1Q9ULI3 1381 aa22.25■■□□□ 1.15
CHRNA3-206ENST00000559658 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.24■■□□□ 1.15
CHRNA3-206ENST00000559658 KAT6BQ8WYB5 2073 aa22.24■■□□□ 1.15
CHRNA3-206ENST00000559658 TRIM27P14373 513 aa22.24■■□□□ 1.15
CHRNA3-206ENST00000559658 ZNF428Q96B54 188 aa22.24■■□□□ 1.15
CHRNA3-206ENST00000559658 KCPQ6ZWJ8 1503 aa22.24■■□□□ 1.15
CHRNA3-206ENST00000559658 ERVV-2B6SEH9 535 aa22.23■■□□□ 1.15
CHRNA3-206ENST00000559658 ZNF496Q96IT1 587 aaPredicted RBP22.23■■□□□ 1.15
CHRNA3-206ENST00000559658 GJD4Q96KN9 370 aaPredicted RBP22.22■■□□□ 1.15
CHRNA3-206ENST00000559658 A0A0G2JS52 829 aa22.21■■□□□ 1.15
CHRNA3-206ENST00000559658 MYT1Q01538 1121 aa22.21■■□□□ 1.15
CHRNA3-206ENST00000559658 ZKSCAN2Q63HK3 967 aa22.21■■□□□ 1.15
CHRNA3-206ENST00000559658 G2E3Q7L622 706 aa22.21■■□□□ 1.15
CHRNA3-206ENST00000559658 KIF16BQ96L93 1317 aa22.21■■□□□ 1.15
CHRNA3-206ENST00000559658 RGS12O14924 1447 aa22.21■■□□□ 1.15
CHRNA3-206ENST00000559658 GIGYF1O75420 1035 aaPredicted RBP22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 BRPF1P55201 1214 aaPredicted RBP22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 PIGBQ92521 554 aa22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 EIF2S2P20042 333 aaKnown RBP22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 ATF7IPQ6VMQ6 1270 aa22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 FBXO41Q8TF61 875 aa22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 COG6Q9Y2V7 657 aa22.2■■□□□ 1.14
CHRNA3-206ENST00000559658 HDGFL1Q5TGJ6 251 aa22.19■■□□□ 1.14
CHRNA3-206ENST00000559658 TMOD3Q9NYL9 352 aa22.19■■□□□ 1.14
CHRNA3-206ENST00000559658 TRPC5Q9UL62 973 aaPredicted RBP22.19■■□□□ 1.14
CHRNA3-206ENST00000559658 LAMB4A4D0S4 1761 aa22.19■■□□□ 1.14
CHRNA3-206ENST00000559658 BCL9O00512 1426 aa22.18■■□□□ 1.14
CHRNA3-206ENST00000559658 SLC4A2P04920 1241 aa22.18■■□□□ 1.14
CHRNA3-206ENST00000559658 ACSBG1Q96GR2 724 aa22.18■■□□□ 1.14
CHRNA3-206ENST00000559658 ANXA1P04083 346 aa22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 FAM182BQ5T319 152 aa22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 TTC5Q8N0Z6 440 aa22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 QTRT2Q9H974 415 aaKnown RBP22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 EP400Q96L91 3159 aa22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 PDE3AQ14432 1141 aa22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 SYTL4Q96C24 671 aaPredicted RBP22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 ASAP1Q9ULH1 1129 aa22.17■■□□□ 1.14
CHRNA3-206ENST00000559658 PRIM1P49642 420 aaKnown RBP22.16■■□□□ 1.14
CHRNA3-206ENST00000559658 CHPF2Q9P2E5 772 aa22.16■■□□□ 1.14
CHRNA3-206ENST00000559658 B4GALNT3Q6L9W6 998 aa22.15■■□□□ 1.14
CHRNA3-206ENST00000559658 DZIP1LQ8IYY4 767 aaKnown RBP22.15■■□□□ 1.14
CHRNA3-206ENST00000559658 BRWD3Q6RI45 1802 aa22.15■■□□□ 1.14
CHRNA3-206ENST00000559658 HOXB7P09629 217 aa22.15■■□□□ 1.14
CHRNA3-206ENST00000559658 PROSER3Q2NL68 480 aa22.15■■□□□ 1.14
CHRNA3-206ENST00000559658 CCDC30Q5VVM6 783 aa22.15■■□□□ 1.14
CHRNA3-206ENST00000559658 CACNA1FO60840 1977 aa22.14■■□□□ 1.14
CHRNA3-206ENST00000559658 PTCD1O75127 700 aaKnown RBP22.14■■□□□ 1.13
CHRNA3-206ENST00000559658 FTSJ3Q8IY81 847 aaKnown RBP22.14■■□□□ 1.13
CHRNA3-206ENST00000559658 SOS1Q07889 1333 aaPredicted RBP22.14■■□□□ 1.13
CHRNA3-206ENST00000559658 ERICH6BQ5W0A0 696 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 TMEM57Q8N5G2 664 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 ATG3Q9NT62 314 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 KCNQ2O43526 872 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 FMNL2Q96PY5 1086 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 STK31Q9BXU1 1019 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 PHAXQ9H814 394 aaKnown RBP22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 PPP4R2Q9NY27 417 aa22.13■■□□□ 1.13
CHRNA3-206ENST00000559658 PIP4K2AP48426 406 aaPredicted RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms