RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 U2AF1L5P0DN76 240 aaPredicted RBP10.97□□□□□ -0.65
SNX1-207ENST00000559401 U2AF1Q01081 240 aaKnown RBP eCLIP10.97□□□□□ -0.65
SNX1-207ENST00000559401 MTHFSDQ2M296 383 aaKnown RBP10.97□□□□□ -0.65
SNX1-207ENST00000559401 KLHL34Q8N239 644 aa10.97□□□□□ -0.65
SNX1-207ENST00000559401 ATG3Q9NT62 314 aa10.97□□□□□ -0.65
SNX1-207ENST00000559401 UBR3Q6ZT12 1888 aa10.97□□□□□ -0.65
SNX1-207ENST00000559401 POLD1P28340 1107 aa10.96□□□□□ -0.65
SNX1-207ENST00000559401 ZEB1P37275 1124 aaPredicted RBP10.96□□□□□ -0.65
SNX1-207ENST00000559401 PTGER2P43116 358 aa10.96□□□□□ -0.65
SNX1-207ENST00000559401 NFATC2IPQ8NCF5 419 aa10.96□□□□□ -0.65
SNX1-207ENST00000559401 SLC16A10Q8TF71 515 aa10.96□□□□□ -0.65
SNX1-207ENST00000559401 GNPATO15228 680 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 PTCD1O75127 700 aaKnown RBP10.95□□□□□ -0.66
SNX1-207ENST00000559401 PRKAR2BP31323 418 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 ITPK1Q13572 414 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 MSL1Q68DK7 614 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 COL23A1Q86Y22 540 aaPredicted RBP10.95□□□□□ -0.66
SNX1-207ENST00000559401 LINC00116Q8NCU8 138 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 GAS2L2Q8NHY3 880 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 ARXQ96QS3 562 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 LGR6Q9HBX8 967 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 COL5A3P25940 1745 aaPredicted RBP10.95□□□□□ -0.66
SNX1-207ENST00000559401 ZNF831Q5JPB2 1677 aa10.95□□□□□ -0.66
SNX1-207ENST00000559401 MRC1P22897 1456 aa10.94□□□□□ -0.66
SNX1-207ENST00000559401 MAP3K5Q99683 1374 aa10.94□□□□□ -0.66
SNX1-207ENST00000559401 DCAF8L1A6NGE4 600 aa10.94□□□□□ -0.66
SNX1-207ENST00000559401 RNMTO43148 476 aaKnown RBP10.94□□□□□ -0.66
SNX1-207ENST00000559401 FLAD1Q8NFF5 587 aa10.94□□□□□ -0.66
SNX1-207ENST00000559401 ADAMTS7Q9UKP4 1686 aa10.94□□□□□ -0.66
SNX1-207ENST00000559401 TJP1Q07157 1748 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 COL24A1Q17RW2 1714 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 NEFMP07197 916 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 TEFQ10587 303 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 SMIM5Q71RC9 77 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 FHDC1Q9C0D6 1143 aaPredicted RBP10.93□□□□□ -0.66
SNX1-207ENST00000559401 RSPH6AQ9H0K4 717 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 SLC52A2Q9HAB3 445 aa10.93□□□□□ -0.66
SNX1-207ENST00000559401 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.92□□□□□ -0.66
SNX1-207ENST00000559401 GNAT3A8MTJ3 354 aa10.92□□□□□ -0.66
SNX1-207ENST00000559401 SGIP1Q9BQI5 828 aa10.92□□□□□ -0.66
SNX1-207ENST00000559401 SRCAPQ6ZRS2 3230 aa10.92□□□□□ -0.66
SNX1-207ENST00000559401 SSFA2P28290 1259 aa10.91□□□□□ -0.66
SNX1-207ENST00000559401 SLC39A6Q13433 755 aa10.91□□□□□ -0.66
SNX1-207ENST00000559401 RALBP1Q15311 655 aa10.91□□□□□ -0.66
SNX1-207ENST00000559401 PHACTR3Q96KR7 559 aa10.91□□□□□ -0.66
SNX1-207ENST00000559401 SLC4A9Q96Q91 983 aa10.91□□□□□ -0.66
SNX1-207ENST00000559401 RTCBQ9Y3I0 505 aaKnown RBP10.91□□□□□ -0.66
SNX1-207ENST00000559401 CICQ96RK0 1608 aaPredicted RBP10.91□□□□□ -0.66
SNX1-207ENST00000559401 SIPA1L3O60292 1781 aaPredicted RBP10.9□□□□□ -0.66
SNX1-207ENST00000559401 FCHSD2O94868 740 aa10.9□□□□□ -0.66
SNX1-207ENST00000559401 AMIGO3Q86WK7 504 aa10.9□□□□□ -0.66
SNX1-207ENST00000559401 TTC5Q8N0Z6 440 aa10.9□□□□□ -0.66
SNX1-207ENST00000559401 RTF1Q92541 710 aaKnown RBP10.9□□□□□ -0.66
SNX1-207ENST00000559401 SYT17Q9BSW7 474 aa10.9□□□□□ -0.66
SNX1-207ENST00000559401 UBR2Q8IWV8 1755 aa10.9□□□□□ -0.67
SNX1-207ENST00000559401 C4AP0C0L4 1744 aa10.89□□□□□ -0.67
SNX1-207ENST00000559401 CNTNAP4Q9C0A0 1308 aa10.89□□□□□ -0.67
SNX1-207ENST00000559401 MYH14Q7Z406 1995 aaKnown RBP10.89□□□□□ -0.67
SNX1-207ENST00000559401 TRAPPC3LQ5T215 181 aa10.89□□□□□ -0.67
SNX1-207ENST00000559401 DLG5Q8TDM6 1919 aa10.89□□□□□ -0.67
SNX1-207ENST00000559401 KCPQ6ZWJ8 1503 aa10.89□□□□□ -0.67
SNX1-207ENST00000559401 MYBBP1AQ9BQG0 1328 aaKnown RBP10.88□□□□□ -0.67
SNX1-207ENST00000559401 MAPK8IP3Q9UPT6 1336 aa10.88□□□□□ -0.67
SNX1-207ENST00000559401 CRKLP46109 303 aaKnown RBP10.88□□□□□ -0.67
SNX1-207ENST00000559401 DNAJC10Q8IXB1 793 aa10.88□□□□□ -0.67
SNX1-207ENST00000559401 PELP1Q8IZL8 1130 aaKnown RBP10.88□□□□□ -0.67
SNX1-207ENST00000559401 IL17REQ8NFR9 667 aa10.88□□□□□ -0.67
SNX1-207ENST00000559401 RPS6KA4O75676 772 aa10.87□□□□□ -0.67
SNX1-207ENST00000559401 RFC4P35249 363 aa10.87□□□□□ -0.67
SNX1-207ENST00000559401 RC3H1Q5TC82 1133 aaKnown RBP10.87□□□□□ -0.67
SNX1-207ENST00000559401 MCM10Q7L590 875 aa10.87□□□□□ -0.67
SNX1-207ENST00000559401 BTBD11A6QL63 1104 aa10.86□□□□□ -0.67
SNX1-207ENST00000559401 ADRA2BP18089 450 aa10.86□□□□□ -0.67
SNX1-207ENST00000559401 PNNQ9H307 717 aaKnown RBP10.86□□□□□ -0.67
SNX1-207ENST00000559401 CCDC87Q9NVE4 849 aa10.86□□□□□ -0.67
SNX1-207ENST00000559401 DCTN1Q14203 1278 aa10.85□□□□□ -0.67
SNX1-207ENST00000559401 GPR162Q16538 588 aa10.85□□□□□ -0.67
SNX1-207ENST00000559401 ZNF790Q6PG37 636 aa10.85□□□□□ -0.67
SNX1-207ENST00000559401 NLGN2Q8NFZ4 835 aa10.85□□□□□ -0.67
SNX1-207ENST00000559401 ARHGEF1Q92888 912 aaKnown RBP10.85□□□□□ -0.67
SNX1-207ENST00000559401 CEMIPQ8WUJ3 1361 aa10.85□□□□□ -0.67
SNX1-207ENST00000559401 MMP10P09238 476 aa10.84□□□□□ -0.67
SNX1-207ENST00000559401 WDR43Q15061 677 aaKnown RBP eCLIP10.84□□□□□ -0.67
SNX1-207ENST00000559401 VSIG10Q8N0Z9 540 aa10.84□□□□□ -0.67
SNX1-207ENST00000559401 ZNF496Q96IT1 587 aaPredicted RBP10.84□□□□□ -0.67
SNX1-207ENST00000559401 FMNL2Q96PY5 1086 aa10.84□□□□□ -0.67
SNX1-207ENST00000559401 ZNF330Q9Y3S2 320 aaPredicted RBP10.84□□□□□ -0.67
SNX1-207ENST00000559401 HEG1Q9ULI3 1381 aa10.83□□□□□ -0.68
SNX1-207ENST00000559401 STARD3NLO95772 234 aa10.83□□□□□ -0.68
SNX1-207ENST00000559401 CYP19A1P11511 503 aaPredicted RBP10.83□□□□□ -0.68
SNX1-207ENST00000559401 CANXP27824 592 aaKnown RBP10.83□□□□□ -0.68
SNX1-207ENST00000559401 NFE2L2Q16236 605 aa10.83□□□□□ -0.68
SNX1-207ENST00000559401 INTS5Q6P9B9 1019 aaKnown RBP10.83□□□□□ -0.68
SNX1-207ENST00000559401 NLGN1Q8N2Q7 840 aa10.83□□□□□ -0.68
SNX1-207ENST00000559401 PRKRIP1Q9H875 184 aaPredicted RBP10.83□□□□□ -0.68
SNX1-207ENST00000559401 SRP68Q9UHB9 627 aaKnown RBP10.83□□□□□ -0.68
SNX1-207ENST00000559401 ZBTB1Q9Y2K1 713 aa10.83□□□□□ -0.68
SNX1-207ENST00000559401 COL15A1P39059 1388 aa10.82□□□□□ -0.68
SNX1-207ENST00000559401 ZNF316A6NFI3 1004 aaPredicted RBP10.82□□□□□ -0.68
SNX1-207ENST00000559401 HTATSF1O43719 755 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms