RNA–Protein interactions for RNA: ENST00000558787.1

MARK3-215, Transcript of microtubule affinity regulating kinase 3, human

TSL 2

Gene MARK3, Length 758 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-215	ENST00000558787	CABP1	Q9NZU7	370 aa		10.03	□□□□□ -0.8
MARK3-215	ENST00000558787	USP35	Q9P2H5	1018 aa		10.03	□□□□□ -0.8
MARK3-215	ENST00000558787	COL14A1	Q05707	1796 aa	Known RBP	10.03	□□□□□ -0.8
MARK3-215	ENST00000558787	ITSN1	Q15811	1721 aa		10.02	□□□□□ -0.8
MARK3-215	ENST00000558787	CRYBG1	Q9Y4K1	1723 aa		10.02	□□□□□ -0.8
MARK3-215	ENST00000558787	ZBTB7C	A1YPR0	619 aa		10.02	□□□□□ -0.81
MARK3-215	ENST00000558787	SF3B2	Q13435	895 aa	Known RBP	10.02	□□□□□ -0.81
MARK3-215	ENST00000558787	PROX2	Q3B8N5	592 aa		10.02	□□□□□ -0.81
MARK3-215	ENST00000558787	THSD4	Q6ZMP0	1018 aa		10.02	□□□□□ -0.81
MARK3-215	ENST00000558787	EVA1C	P58658	441 aa		10.01	□□□□□ -0.81
MARK3-215	ENST00000558787	PDIA6	Q15084	440 aa		10.01	□□□□□ -0.81
MARK3-215	ENST00000558787	TOPAZ1	Q8N9V7	1692 aa		10.01	□□□□□ -0.81
MARK3-215	ENST00000558787	SPATA31A1	Q5TZJ5	1347 aa		10.01	□□□□□ -0.81
MARK3-215	ENST00000558787	GC	P02774	474 aa		10	□□□□□ -0.81
MARK3-215	ENST00000558787	LARP1	Q6PKG0	1096 aa	Known RBP	10	□□□□□ -0.81
MARK3-215	ENST00000558787	ROCK2	O75116	1388 aa	Known RBP	10	□□□□□ -0.81
MARK3-215	ENST00000558787	PHRF1	Q9P1Y6	1649 aa	Known RBP	10	□□□□□ -0.81
MARK3-215	ENST00000558787	QRICH2	Q9H0J4	1663 aa		9.99	□□□□□ -0.81
MARK3-215	ENST00000558787	NLRP13	Q86W25	1043 aa		9.99	□□□□□ -0.81
MARK3-215	ENST00000558787	USP19	O94966	1318 aa		9.99	□□□□□ -0.81
MARK3-215	ENST00000558787	EVC2	Q86UK5	1308 aa		9.99	□□□□□ -0.81
MARK3-215	ENST00000558787	EN1	Q05925	392 aa	Predicted RBP	9.98	□□□□□ -0.81
MARK3-215	ENST00000558787	ANKK1	Q8NFD2	765 aa		9.98	□□□□□ -0.81
MARK3-215	ENST00000558787	KIAA1468	Q9P260	1216 aa		9.98	□□□□□ -0.81
MARK3-215	ENST00000558787	CAMTA1	Q9Y6Y1	1673 aa		9.98	□□□□□ -0.81
MARK3-215	ENST00000558787	TRPM1	Q7Z4N2	1603 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	TRIM37	O94972	964 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	NBR1	Q14596	966 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	LAPTM4B	Q86VI4	370 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	USP6	P35125	1406 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	SSH2	Q76I76	1423 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	NRK	Q7Z2Y5	1582 aa		9.97	□□□□□ -0.81
MARK3-215	ENST00000558787	MAP3K7	O43318	606 aa		9.96	□□□□□ -0.82
MARK3-215	ENST00000558787	BAG6	P46379	1132 aa		9.96	□□□□□ -0.82
MARK3-215	ENST00000558787	CPD	O75976	1380 aa		9.96	□□□□□ -0.82
MARK3-215	ENST00000558787	THSD7A	Q9UPZ6	1657 aa		9.96	□□□□□ -0.82
MARK3-215	ENST00000558787	PDE3B	Q13370	1112 aa		9.95	□□□□□ -0.82
MARK3-215	ENST00000558787	TCP11L2	Q8N4U5	519 aa		9.95	□□□□□ -0.82
MARK3-215	ENST00000558787	CARD11	Q9BXL7	1154 aa		9.95	□□□□□ -0.82
MARK3-215	ENST00000558787	ARIH1	Q9Y4X5	557 aa	Predicted RBP	9.95	□□□□□ -0.82
MARK3-215	ENST00000558787	TTC21B	Q7Z4L5	1316 aa		9.95	□□□□□ -0.82
MARK3-215	ENST00000558787	TRIM6-TRIM34	B2RNG4	842 aa		9.94	□□□□□ -0.82
MARK3-215	ENST00000558787	EZH2	Q15910	746 aa	Known RBP	9.94	□□□□□ -0.82
MARK3-215	ENST00000558787	FAM196A	Q6ZSG2	479 aa		9.94	□□□□□ -0.82
MARK3-215	ENST00000558787	BARGIN	Q6ZT62	677 aa		9.94	□□□□□ -0.82
MARK3-215	ENST00000558787	LMO7	Q8WWI1	1683 aa		9.93	□□□□□ -0.82
MARK3-215	ENST00000558787	APBA3	O96018	575 aa		9.93	□□□□□ -0.82
MARK3-215	ENST00000558787	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	9.93	□□□□□ -0.82
MARK3-215	ENST00000558787	TMC1	Q8TDI8	760 aa		9.93	□□□□□ -0.82
MARK3-215	ENST00000558787	COL5A2	P05997	1499 aa	Predicted RBP	9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	BRD4	O60885	1362 aa	Predicted RBP	9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	GRXCR2	A6NFK2	248 aa		9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	TRIM26	Q12899	539 aa	Predicted RBP	9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	R3HDM1	Q15032	1099 aa	Known RBP	9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	TOM1L2	Q6ZVM7	507 aa		9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	ZFR	Q96KR1	1074 aa	Known RBP	9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	SLC12A5	Q9H2X9	1139 aa		9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	PIK3C2A	O00443	1686 aa		9.92	□□□□□ -0.82
MARK3-215	ENST00000558787	AATK	Q6ZMQ8	1374 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	KTN1	Q86UP2	1357 aa	Known RBP	9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	TONSL	Q96HA7	1378 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	PACS2	Q86VP3	889 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	ARHGEF25	Q86VW2	580 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	NME9	Q86XW9	330 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	CAMKK2	Q96RR4	588 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	SEPT9	Q9UHD8	586 aa	Predicted RBP	9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	SLIT3	O75094	1523 aa		9.91	□□□□□ -0.82
MARK3-215	ENST00000558787	CPSF1	Q10570	1443 aa	Known RBP	9.9	□□□□□ -0.82
MARK3-215	ENST00000558787	TSR1	Q2NL82	804 aa	Known RBP	9.9	□□□□□ -0.82
MARK3-215	ENST00000558787	PTF1A	Q7RTS3	328 aa		9.9	□□□□□ -0.82
MARK3-215	ENST00000558787	THRAP3	Q9Y2W1	955 aa	Known RBP	9.9	□□□□□ -0.82
MARK3-215	ENST00000558787	CRB1	P82279	1406 aa		9.9	□□□□□ -0.83
MARK3-215	ENST00000558787	TTC21A	Q8NDW8	1320 aa		9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	SOWAHB	A6NEL2	793 aa		9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	CSB-PGBD3	P0DP91	1061 aa		9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	IFFO2	Q5TF58	517 aa		9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	KCNH5	Q8NCM2	988 aa		9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	RGPD1	P0DJD0	1748 aa		9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	TNS1	Q9HBL0	1735 aa	Known RBP	9.89	□□□□□ -0.83
MARK3-215	ENST00000558787	COL18A1	P39060	1754 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	WDR17	Q8IZU2	1322 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	CD163L1	Q9NR16	1453 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	ST20-MTHFS	A0A0A6YYL1	179 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	BCAM	P50895	628 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	DDB1	Q16531	1140 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	DISP2	A7MBM2	1401 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	AKAP12	Q02952	1782 aa		9.88	□□□□□ -0.83
MARK3-215	ENST00000558787	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	9.87	□□□□□ -0.83
MARK3-215	ENST00000558787	MARCH10	Q8NA82	808 aa	Predicted RBP	9.87	□□□□□ -0.83
MARK3-215	ENST00000558787	SBNO2	Q9Y2G9	1366 aa		9.87	□□□□□ -0.83
MARK3-215	ENST00000558787	RGPD5	Q99666	1765 aa		9.86	□□□□□ -0.83
MARK3-215	ENST00000558787	NYAP1	Q6ZVC0	841 aa		9.86	□□□□□ -0.83
MARK3-215	ENST00000558787	TESK2	Q96S53	571 aa		9.86	□□□□□ -0.83
MARK3-215	ENST00000558787	CARD10	Q9BWT7	1032 aa		9.86	□□□□□ -0.83
MARK3-215	ENST00000558787	NFAT5	O94916	1531 aa		9.86	□□□□□ -0.83
MARK3-215	ENST00000558787	FBLN1	P23142	703 aa		9.85	□□□□□ -0.83
MARK3-215	ENST00000558787	CDCA7L	Q96GN5	454 aa		9.85	□□□□□ -0.83
MARK3-215	ENST00000558787	TSHZ2	Q9NRE2	1034 aa		9.85	□□□□□ -0.83
MARK3-215	ENST00000558787	TSKS	Q9UJT2	592 aa		9.85	□□□□□ -0.83
MARK3-215	ENST00000558787	USP31	Q70CQ4	1352 aa		9.85	□□□□□ -0.83

Retrieved 100 of 20,778 RNA–protein pairs in 297.9 ms