RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 CALD1Q05682 793 aaKnown RBP13.73□□□□□ -0.21
LRRC28-204ENST00000558172 PIGBQ92521 554 aa13.73□□□□□ -0.21
LRRC28-204ENST00000558172 UPF1Q92900 1129 aaKnown RBP eCLIP13.73□□□□□ -0.21
LRRC28-204ENST00000558172 TRIM35Q9UPQ4 493 aa13.73□□□□□ -0.21
LRRC28-204ENST00000558172 PLSCR1O15162 318 aa13.72□□□□□ -0.21
LRRC28-204ENST00000558172 APBA3O96018 575 aa13.72□□□□□ -0.21
LRRC28-204ENST00000558172 DCTN1Q14203 1278 aa13.72□□□□□ -0.21
LRRC28-204ENST00000558172 TAF7Q15545 349 aaPredicted RBP13.72□□□□□ -0.21
LRRC28-204ENST00000558172 SMARCC1Q92922 1105 aaPredicted RBP13.72□□□□□ -0.21
LRRC28-204ENST00000558172 LY75O60449 1722 aa13.71□□□□□ -0.21
LRRC28-204ENST00000558172 BAG6P46379 1132 aa13.71□□□□□ -0.21
LRRC28-204ENST00000558172 BABAM1Q9NWV8 329 aa13.71□□□□□ -0.21
LRRC28-204ENST00000558172 HMGB2P26583 209 aaKnown RBP13.7□□□□□ -0.22
LRRC28-204ENST00000558172 PTF1AQ7RTS3 328 aa13.7□□□□□ -0.22
LRRC28-204ENST00000558172 WWC1Q8IX03 1113 aa13.7□□□□□ -0.22
LRRC28-204ENST00000558172 PAPPAQ13219 1627 aa13.69□□□□□ -0.22
LRRC28-204ENST00000558172 KDM3BQ7LBC6 1761 aa13.69□□□□□ -0.22
LRRC28-204ENST00000558172 BTBD11A6QL63 1104 aa13.69□□□□□ -0.22
LRRC28-204ENST00000558172 ATG3Q9NT62 314 aa13.69□□□□□ -0.22
LRRC28-204ENST00000558172 UBR2Q8IWV8 1755 aa13.68□□□□□ -0.22
LRRC28-204ENST00000558172 WDR63Q8IWG1 891 aa13.68□□□□□ -0.22
LRRC28-204ENST00000558172 TTC5Q8N0Z6 440 aa13.68□□□□□ -0.22
LRRC28-204ENST00000558172 THUMPD2Q9BTF0 503 aaKnown RBP13.68□□□□□ -0.22
LRRC28-204ENST00000558172 SALL2Q9Y467 1007 aaPredicted RBP13.68□□□□□ -0.22
LRRC28-204ENST00000558172 ZNF831Q5JPB2 1677 aa13.68□□□□□ -0.22
LRRC28-204ENST00000558172 IL16Q14005 1332 aa13.67□□□□□ -0.22
LRRC28-204ENST00000558172 ZNF790Q6PG37 636 aa13.67□□□□□ -0.22
LRRC28-204ENST00000558172 ASAP1Q9ULH1 1129 aa13.67□□□□□ -0.22
LRRC28-204ENST00000558172 PALLDQ8WX93 1383 aa13.67□□□□□ -0.22
LRRC28-204ENST00000558172 SOCS7O14512 581 aa13.66□□□□□ -0.22
LRRC28-204ENST00000558172 GNAI1P63096 354 aa13.66□□□□□ -0.22
LRRC28-204ENST00000558172 SLC27A3Q5K4L6 730 aa13.66□□□□□ -0.22
LRRC28-204ENST00000558172 CFAP44Q96MT7 982 aa13.66□□□□□ -0.22
LRRC28-204ENST00000558172 CAMKK2Q96RR4 588 aa13.66□□□□□ -0.22
LRRC28-204ENST00000558172 IFT57Q9NWB7 429 aa13.66□□□□□ -0.22
LRRC28-204ENST00000558172 TAF1LQ8IZX4 1826 aa13.65□□□□□ -0.22
LRRC28-204ENST00000558172 SENP3-EIF4A1A0A087X0R7 540 aa13.65□□□□□ -0.22
LRRC28-204ENST00000558172 CHL1O00533 1208 aa13.65□□□□□ -0.22
LRRC28-204ENST00000558172 EN1Q05925 392 aaPredicted RBP13.65□□□□□ -0.22
LRRC28-204ENST00000558172 SLC39A6Q13433 755 aa13.65□□□□□ -0.22
LRRC28-204ENST00000558172 TSPYL4Q9UJ04 414 aa13.65□□□□□ -0.22
LRRC28-204ENST00000558172 RREB1Q92766 1687 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 ZNF853P0CG23 659 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 HNRNPUQ00839 825 aaKnown RBP eCLIP13.64□□□□□ -0.23
LRRC28-204ENST00000558172 TXNRD1Q16881 649 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 DEFB132Q7Z7B7 95 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 VSIG10Q8N0Z9 540 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 FMNL2Q96PY5 1086 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 LAS1LQ9Y4W2 734 aaKnown RBP13.64□□□□□ -0.23
LRRC28-204ENST00000558172 ZNF521Q96K83 1311 aa13.64□□□□□ -0.23
LRRC28-204ENST00000558172 LOC102724428A0A0B4J2F2 783 aa13.63□□□□□ -0.23
LRRC28-204ENST00000558172 SIK1P57059 783 aa13.63□□□□□ -0.23
LRRC28-204ENST00000558172 EZH2Q15910 746 aaKnown RBP13.63□□□□□ -0.23
LRRC28-204ENST00000558172 RBM42Q9BTD8 480 aaKnown RBP13.63□□□□□ -0.23
LRRC28-204ENST00000558172 MIS18AQ9NYP9 233 aa13.63□□□□□ -0.23
LRRC28-204ENST00000558172 CCNL1Q9UK58 526 aaPredicted RBP13.63□□□□□ -0.23
LRRC28-204ENST00000558172 CICQ96RK0 1608 aaPredicted RBP13.63□□□□□ -0.23
LRRC28-204ENST00000558172 KCPQ6ZWJ8 1503 aa13.63□□□□□ -0.23
LRRC28-204ENST00000558172 PTCD1O75127 700 aaKnown RBP13.62□□□□□ -0.23
LRRC28-204ENST00000558172 ATP6V1AP38606 617 aa13.62□□□□□ -0.23
LRRC28-204ENST00000558172 GOLGA2Q08379 1002 aa13.62□□□□□ -0.23
LRRC28-204ENST00000558172 PROM2Q8N271 834 aa13.62□□□□□ -0.23
LRRC28-204ENST00000558172 TEX13AQ9BXU3 409 aaPredicted RBP13.62□□□□□ -0.23
LRRC28-204ENST00000558172 C5P01031 1676 aa13.62□□□□□ -0.23
LRRC28-204ENST00000558172 HEG1Q9ULI3 1381 aa13.61□□□□□ -0.23
LRRC28-204ENST00000558172 KCNQ3O43525 872 aa13.61□□□□□ -0.23
LRRC28-204ENST00000558172 EIF4A1P60842 406 aaKnown RBP13.61□□□□□ -0.23
LRRC28-204ENST00000558172 ZNF496Q96IT1 587 aaPredicted RBP13.61□□□□□ -0.23
LRRC28-204ENST00000558172 MYH16Q9H6N6 1097 aa13.61□□□□□ -0.23
LRRC28-204ENST00000558172 COL5A3P25940 1745 aaPredicted RBP13.61□□□□□ -0.23
LRRC28-204ENST00000558172 NUP188Q5SRE5 1749 aa13.61□□□□□ -0.23
LRRC28-204ENST00000558172 SNRPA1P09661 255 aaKnown RBP13.6□□□□□ -0.23
LRRC28-204ENST00000558172 TJP1Q07157 1748 aa13.6□□□□□ -0.23
LRRC28-204ENST00000558172 MBIPQ9NS73 344 aa13.6□□□□□ -0.23
LRRC28-204ENST00000558172 ZBED9Q6R2W3 1325 aa13.6□□□□□ -0.23
LRRC28-204ENST00000558172 E9PSI1 815 aa13.59□□□□□ -0.23
LRRC28-204ENST00000558172 SLC4A9Q96Q91 983 aa13.59□□□□□ -0.23
LRRC28-204ENST00000558172 LRRC4BQ9NT99 713 aa13.59□□□□□ -0.23
LRRC28-204ENST00000558172 LAMB4A4D0S4 1761 aa13.58□□□□□ -0.23
LRRC28-204ENST00000558172 STARD3NLO95772 234 aa13.58□□□□□ -0.24
LRRC28-204ENST00000558172 NBPF14Q5TI25 921 aa13.58□□□□□ -0.24
LRRC28-204ENST00000558172 CHMP4AQ9BY43 222 aa13.58□□□□□ -0.24
LRRC28-204ENST00000558172 CACNA1FO60840 1977 aa13.58□□□□□ -0.24
LRRC28-204ENST00000558172 MYH14Q7Z406 1995 aaKnown RBP13.58□□□□□ -0.24
LRRC28-204ENST00000558172 C4BP0C0L5 1744 aa13.57□□□□□ -0.24
LRRC28-204ENST00000558172 GIGYF1O75420 1035 aaPredicted RBP13.57□□□□□ -0.24
LRRC28-204ENST00000558172 SLFN5Q08AF3 891 aa13.57□□□□□ -0.24
LRRC28-204ENST00000558172 ITPK1Q13572 414 aa13.57□□□□□ -0.24
LRRC28-204ENST00000558172 RC3H1Q5TC82 1133 aaKnown RBP13.57□□□□□ -0.24
LRRC28-204ENST00000558172 SOS1Q07889 1333 aaPredicted RBP13.57□□□□□ -0.24
LRRC28-204ENST00000558172 HOXB7P09629 217 aa13.56□□□□□ -0.24
LRRC28-204ENST00000558172 DNAJC10Q8IXB1 793 aa13.56□□□□□ -0.24
LRRC28-204ENST00000558172 TSR2Q969E8 191 aaKnown RBP13.56□□□□□ -0.24
LRRC28-204ENST00000558172 SPINK5Q9NQ38 1064 aaPredicted RBP13.56□□□□□ -0.24
LRRC28-204ENST00000558172 FANCIQ9NVI1 1328 aa13.56□□□□□ -0.24
LRRC28-204ENST00000558172 QSER1Q2KHR3 1735 aa13.56□□□□□ -0.24
LRRC28-204ENST00000558172 CYP19A1P11511 503 aaPredicted RBP13.55□□□□□ -0.24
LRRC28-204ENST00000558172 KCNQ4P56696 695 aa13.55□□□□□ -0.24
LRRC28-204ENST00000558172 TRMT2AQ8IZ69 625 aaKnown RBP13.55□□□□□ -0.24
LRRC28-204ENST00000558172 LINC00116Q8NCU8 138 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms