RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 A0A1W2PRU2 124 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 PALM3A6NDB9 673 aaPredicted RBP10.97□□□□□ -0.65
RTF1-204ENST00000558117 FIGNL2A6NMB9 653 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 ATP9BO43861 1147 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 NCOA4Q13772 614 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.97□□□□□ -0.65
RTF1-204ENST00000558117 DEPDC4Q8N2C3 294 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 PPP1R12CQ9BZL4 782 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 DNMT3LQ9UJW3 386 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 NOD1Q9Y239 953 aa10.97□□□□□ -0.65
RTF1-204ENST00000558117 ESCO1Q5FWF5 840 aa10.96□□□□□ -0.65
RTF1-204ENST00000558117 CHMP7Q8WUX9 453 aaPredicted RBP10.96□□□□□ -0.65
RTF1-204ENST00000558117 RAB6BQ9NRW1 208 aa10.96□□□□□ -0.65
RTF1-204ENST00000558117 RNF217Q8TC41 542 aa10.95□□□□□ -0.66
RTF1-204ENST00000558117 TARBP1Q13395 1621 aaKnown RBP10.95□□□□□ -0.66
RTF1-204ENST00000558117 ABCC10Q5T3U5 1492 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 USP17L3A6NCW0 530 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 USP17L4A6NCW7 530 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 CLN3Q13286 438 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 FOXD4L5Q5VV16 416 aaPredicted RBP10.94□□□□□ -0.66
RTF1-204ENST00000558117 USP17L2Q6R6M4 530 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 USP17L1Q7RTZ2 530 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 PLEKHM2Q8IWE5 1019 aa10.94□□□□□ -0.66
RTF1-204ENST00000558117 GPC1P35052 558 aa10.93□□□□□ -0.66
RTF1-204ENST00000558117 PSME1Q06323 249 aa10.93□□□□□ -0.66
RTF1-204ENST00000558117 SLC27A3Q5K4L6 730 aa10.93□□□□□ -0.66
RTF1-204ENST00000558117 TRIM50Q86XT4 487 aa10.93□□□□□ -0.66
RTF1-204ENST00000558117 MAFBQ9Y5Q3 323 aaPredicted RBP10.93□□□□□ -0.66
RTF1-204ENST00000558117 SNAPC4Q5SXM2 1469 aa10.93□□□□□ -0.66
RTF1-204ENST00000558117 RNF144AP50876 292 aaPredicted RBP10.92□□□□□ -0.66
RTF1-204ENST00000558117 GTF2IP78347 998 aa10.92□□□□□ -0.66
RTF1-204ENST00000558117 CFAP70Q5T0N1 1121 aa10.92□□□□□ -0.66
RTF1-204ENST00000558117 LYSMD3Q7Z3D4 306 aa10.92□□□□□ -0.66
RTF1-204ENST00000558117 CNKSR1Q969H4 720 aa10.92□□□□□ -0.66
RTF1-204ENST00000558117 GTF2E1P29083 439 aaPredicted RBP10.91□□□□□ -0.66
RTF1-204ENST00000558117 LMOD1P29536 600 aaPredicted RBP10.91□□□□□ -0.66
RTF1-204ENST00000558117 CCDC82Q8N4S0 544 aa10.91□□□□□ -0.66
RTF1-204ENST00000558117 ZNF775Q96BV0 537 aaPredicted RBP10.91□□□□□ -0.66
RTF1-204ENST00000558117 ESYT1Q9BSJ8 1104 aa10.91□□□□□ -0.66
RTF1-204ENST00000558117 RFX1P22670 979 aa10.9□□□□□ -0.66
RTF1-204ENST00000558117 ATP1A2P50993 1020 aa10.9□□□□□ -0.66
RTF1-204ENST00000558117 GDF10P55107 478 aa10.9□□□□□ -0.66
RTF1-204ENST00000558117 ETNK1Q9HBU6 452 aa10.9□□□□□ -0.66
RTF1-204ENST00000558117 NXF1Q9UBU9 619 aaKnown RBP10.9□□□□□ -0.66
RTF1-204ENST00000558117 STAU1O95793 577 aaKnown RBP10.89□□□□□ -0.67
RTF1-204ENST00000558117 IL2RAP01589 272 aa10.89□□□□□ -0.67
RTF1-204ENST00000558117 PRICKLE2Q7Z3G6 844 aa10.88□□□□□ -0.67
RTF1-204ENST00000558117 CCDC97Q96F63 343 aaPredicted RBP10.88□□□□□ -0.67
RTF1-204ENST00000558117 SERPINA10Q9UK55 444 aa10.88□□□□□ -0.67
RTF1-204ENST00000558117 TDRD9Q8NDG6 1382 aaKnown RBP10.88□□□□□ -0.67
RTF1-204ENST00000558117 TERTO14746 1132 aaKnown RBP10.87□□□□□ -0.67
RTF1-204ENST00000558117 PTSQ03393 145 aa10.87□□□□□ -0.67
RTF1-204ENST00000558117 TLR1Q15399 786 aa10.87□□□□□ -0.67
RTF1-204ENST00000558117 SLC16A10Q8TF71 515 aa10.87□□□□□ -0.67
RTF1-204ENST00000558117 XAGE2Q96GT9 111 aa10.87□□□□□ -0.67
RTF1-204ENST00000558117 ZSCAN10Q96SZ4 725 aaPredicted RBP10.87□□□□□ -0.67
RTF1-204ENST00000558117 MKRN1Q9UHC7 482 aaKnown RBP10.87□□□□□ -0.67
RTF1-204ENST00000558117 PCDHGA11Q9Y5H2 935 aa10.87□□□□□ -0.67
RTF1-204ENST00000558117 INHAP05111 366 aa10.86□□□□□ -0.67
RTF1-204ENST00000558117 SCNN1DP51172 638 aa10.86□□□□□ -0.67
RTF1-204ENST00000558117 CENPCQ03188 943 aa10.86□□□□□ -0.67
RTF1-204ENST00000558117 KANK4Q5T7N3 995 aaPredicted RBP10.86□□□□□ -0.67
RTF1-204ENST00000558117 NPAS3Q8IXF0 933 aa10.86□□□□□ -0.67
RTF1-204ENST00000558117 RBM19Q9Y4C8 960 aaKnown RBP10.86□□□□□ -0.67
RTF1-204ENST00000558117 ABCC8Q09428 1581 aa10.86□□□□□ -0.67
RTF1-204ENST00000558117 CDCA8Q53HL2 280 aa10.85□□□□□ -0.67
RTF1-204ENST00000558117 TMEM214Q6NUQ4 689 aaKnown RBP10.85□□□□□ -0.67
RTF1-204ENST00000558117 DNAAF2Q9NVR5 837 aaKnown RBP10.85□□□□□ -0.67
RTF1-204ENST00000558117 SPATA31D1Q6ZQQ2 1576 aa10.85□□□□□ -0.67
RTF1-204ENST00000558117 BACH1O14867 736 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 RHOQP17081 205 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 GNASQ5JWF2 1037 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 OGFOD1Q8N543 542 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 GRIP2Q9C0E4 1043 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 SERTAD1Q9UHV2 236 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 MAGI1Q96QZ7 1491 aaPredicted RBP10.84□□□□□ -0.67
RTF1-204ENST00000558117 DIP2BQ9P265 1576 aa10.84□□□□□ -0.67
RTF1-204ENST00000558117 WASLO00401 505 aaPredicted RBP10.83□□□□□ -0.68
RTF1-204ENST00000558117 ZBTB7BO15156 539 aaPredicted RBP10.83□□□□□ -0.68
RTF1-204ENST00000558117 VEGFBP49765 207 aa10.83□□□□□ -0.68
RTF1-204ENST00000558117 CLDN10P78369 228 aa10.83□□□□□ -0.68
RTF1-204ENST00000558117 KIAA1024Q9UPX6 916 aa10.83□□□□□ -0.68
RTF1-204ENST00000558117 WFS1O76024 890 aa10.82□□□□□ -0.68
RTF1-204ENST00000558117 RASA1P20936 1047 aa10.82□□□□□ -0.68
RTF1-204ENST00000558117 LARP1Q6PKG0 1096 aaKnown RBP10.82□□□□□ -0.68
RTF1-204ENST00000558117 TAS1R3Q7RTX0 852 aa10.82□□□□□ -0.68
RTF1-204ENST00000558117 TPCN2Q8NHX9 752 aa10.82□□□□□ -0.68
RTF1-204ENST00000558117 ARID3AQ99856 593 aa10.82□□□□□ -0.68
RTF1-204ENST00000558117 HRH3Q9Y5N1 445 aa10.82□□□□□ -0.68
RTF1-204ENST00000558117 POLA1P09884 1462 aaPredicted RBP10.81□□□□□ -0.68
RTF1-204ENST00000558117 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.81□□□□□ -0.68
RTF1-204ENST00000558117 TMEM229AB2RXF0 380 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 SPATA31C2B4DYI2 1134 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 PPFIA3O75145 1194 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 SRPK2P78362 688 aaKnown RBP10.81□□□□□ -0.68
RTF1-204ENST00000558117 POU4F2Q12837 409 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 NBPF10Q6P3W6 841 aaKnown RBP10.81□□□□□ -0.68
RTF1-204ENST00000558117 LARGE2Q8N3Y3 721 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 NBPF15Q8N660 670 aa10.81□□□□□ -0.68
RTF1-204ENST00000558117 CCDC155Q8N6L0 562 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms