RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 TMOD3Q9NYL9 352 aa14.95□□□□□ -0.02
SYNE2-227ENST00000557307 KNSTRNQ9Y448 316 aa14.95□□□□□ -0.02
SYNE2-227ENST00000557307 LOC102724428A0A0B4J2F2 783 aa14.94□□□□□ -0.02
SYNE2-227ENST00000557307 PHF14O94880 888 aa14.94□□□□□ -0.02
SYNE2-227ENST00000557307 SIK1P57059 783 aa14.94□□□□□ -0.02
SYNE2-227ENST00000557307 CNGB1Q14028 1251 aaPredicted RBP14.93□□□□□ -0.02
SYNE2-227ENST00000557307 CC2D1BQ5T0F9 858 aaKnown RBP14.93□□□□□ -0.02
SYNE2-227ENST00000557307 SULT6B1Q6IMI4 303 aa14.93□□□□□ -0.02
SYNE2-227ENST00000557307 ZNF530Q6P9A1 599 aaPredicted RBP14.93□□□□□ -0.02
SYNE2-227ENST00000557307 PLEKHG2Q9H7P9 1386 aa14.93□□□□□ -0.02
SYNE2-227ENST00000557307 POLD1P28340 1107 aa14.92□□□□□ -0.02
SYNE2-227ENST00000557307 SMARCC1Q92922 1105 aaPredicted RBP14.92□□□□□ -0.02
SYNE2-227ENST00000557307 KIF13BQ9NQT8 1826 aa14.92□□□□□ -0.02
SYNE2-227ENST00000557307 SIPA1L3O60292 1781 aaPredicted RBP14.91□□□□□ -0.02
SYNE2-227ENST00000557307 N4BP2Q86UW6 1770 aaPredicted RBP14.91□□□□□ -0.02
SYNE2-227ENST00000557307 AK7Q96M32 723 aa14.91□□□□□ -0.02
SYNE2-227ENST00000557307 UBR2Q8IWV8 1755 aa14.9□□□□□ -0.02
SYNE2-227ENST00000557307 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.9□□□□□ -0.02
SYNE2-227ENST00000557307 MTHFSP49914 203 aa14.9□□□□□ -0.02
SYNE2-227ENST00000557307 MRC1P22897 1456 aa14.89□□□□□ -0.03
SYNE2-227ENST00000557307 HMOX1P09601 288 aa14.89□□□□□ -0.03
SYNE2-227ENST00000557307 ATP6V1AP38606 617 aa14.89□□□□□ -0.03
SYNE2-227ENST00000557307 PLEKHO1Q53GL0 409 aaPredicted RBP14.89□□□□□ -0.03
SYNE2-227ENST00000557307 DCAF8L1A6NGE4 600 aa14.88□□□□□ -0.03
SYNE2-227ENST00000557307 GNPATO15228 680 aa14.88□□□□□ -0.03
SYNE2-227ENST00000557307 YBX3P16989 372 aaKnown RBP eCLIP14.88□□□□□ -0.03
SYNE2-227ENST00000557307 PELP1Q8IZL8 1130 aaKnown RBP14.88□□□□□ -0.03
SYNE2-227ENST00000557307 DCAF5Q96JK2 942 aa14.88□□□□□ -0.03
SYNE2-227ENST00000557307 KCPQ6ZWJ8 1503 aa14.87□□□□□ -0.03
SYNE2-227ENST00000557307 BRCA1P38398 1863 aaKnown RBP14.87□□□□□ -0.03
SYNE2-227ENST00000557307 ERVV-2B6SEH9 535 aa14.87□□□□□ -0.03
SYNE2-227ENST00000557307 RBM42Q9BTD8 480 aaKnown RBP14.87□□□□□ -0.03
SYNE2-227ENST00000557307 SSFA2P28290 1259 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 CABP4P57796 275 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 GPR162Q16538 588 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 AMOTQ4VCS5 1084 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 ZNF784Q8NCA9 323 aaPredicted RBP14.85□□□□□ -0.03
SYNE2-227ENST00000557307 NFATC2IPQ8NCF5 419 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 LGR6Q9HBX8 967 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 WWC3Q9ULE0 1092 aa14.85□□□□□ -0.03
SYNE2-227ENST00000557307 FLAD1Q8NFF5 587 aa14.84□□□□□ -0.03
SYNE2-227ENST00000557307 NPC1L1Q9UHC9 1359 aa14.84□□□□□ -0.03
SYNE2-227ENST00000557307 PTCD1O75127 700 aaKnown RBP14.83□□□□□ -0.04
SYNE2-227ENST00000557307 HSP90AB1P08238 724 aaKnown RBP14.83□□□□□ -0.04
SYNE2-227ENST00000557307 MTHFSDQ2M296 383 aaKnown RBP14.83□□□□□ -0.04
SYNE2-227ENST00000557307 C1orf141Q5JVX7 400 aa14.83□□□□□ -0.04
SYNE2-227ENST00000557307 AFDNP55196 1824 aaKnown RBP14.82□□□□□ -0.04
SYNE2-227ENST00000557307 CNTNAP4Q9C0A0 1308 aa14.82□□□□□ -0.04
SYNE2-227ENST00000557307 DIAPH1O60610 1272 aaKnown RBP14.81□□□□□ -0.04
SYNE2-227ENST00000557307 SLC39A6Q13433 755 aa14.81□□□□□ -0.04
SYNE2-227ENST00000557307 AKAP4Q5JQC9 854 aa14.81□□□□□ -0.04
SYNE2-227ENST00000557307 PXDNLA1KZ92 1463 aa14.81□□□□□ -0.04
SYNE2-227ENST00000557307 DLG5Q8TDM6 1919 aa14.8□□□□□ -0.04
SYNE2-227ENST00000557307 RNMTO43148 476 aaKnown RBP14.8□□□□□ -0.04
SYNE2-227ENST00000557307 ARHGEF1Q92888 912 aaKnown RBP14.8□□□□□ -0.04
SYNE2-227ENST00000557307 CRKLP46109 303 aaKnown RBP14.79□□□□□ -0.04
SYNE2-227ENST00000557307 C10orf71Q711Q0 1435 aa14.79□□□□□ -0.04
SYNE2-227ENST00000557307 SLC52A2Q9HAB3 445 aa14.79□□□□□ -0.04
SYNE2-227ENST00000557307 SRP68Q9UHB9 627 aaKnown RBP14.79□□□□□ -0.04
SYNE2-227ENST00000557307 CD2APQ9Y5K6 639 aa14.79□□□□□ -0.04
SYNE2-227ENST00000557307 MMP10P09238 476 aa14.78□□□□□ -0.04
SYNE2-227ENST00000557307 GYS1P13807 737 aa14.78□□□□□ -0.04
SYNE2-227ENST00000557307 DNAJC10Q8IXB1 793 aa14.78□□□□□ -0.04
SYNE2-227ENST00000557307 RTCBQ9Y3I0 505 aaKnown RBP14.78□□□□□ -0.04
SYNE2-227ENST00000557307 U2SURPO15042 1029 aaKnown RBP14.77□□□□□ -0.05
SYNE2-227ENST00000557307 RPS6KA4O75676 772 aa14.77□□□□□ -0.05
SYNE2-227ENST00000557307 RC3H1Q5TC82 1133 aaKnown RBP14.77□□□□□ -0.05
SYNE2-227ENST00000557307 INTS5Q6P9B9 1019 aaKnown RBP14.77□□□□□ -0.05
SYNE2-227ENST00000557307 ARFGEF1Q9Y6D6 1849 aa14.77□□□□□ -0.05
SYNE2-227ENST00000557307 NRXN2Q9P2S2 1712 aa14.77□□□□□ -0.05
SYNE2-227ENST00000557307 SCN7AQ01118 1682 aa14.77□□□□□ -0.05
SYNE2-227ENST00000557307 TRAPPC3LQ5T215 181 aa14.76□□□□□ -0.05
SYNE2-227ENST00000557307 DLEC1Q9Y238 1755 aa14.75□□□□□ -0.05
SYNE2-227ENST00000557307 FKBP8Q14318 412 aa14.74□□□□□ -0.05
SYNE2-227ENST00000557307 PHACTR3Q96KR7 559 aa14.74□□□□□ -0.05
SYNE2-227ENST00000557307 BCORQ6W2J9 1755 aa14.74□□□□□ -0.05
SYNE2-227ENST00000557307 ANKRD31Q8N7Z5 1873 aa14.74□□□□□ -0.05
SYNE2-227ENST00000557307 ADCY9O60503 1353 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 USP42Q9H9J4 1324 aaKnown RBP14.73□□□□□ -0.05
SYNE2-227ENST00000557307 CYP19A1P11511 503 aaPredicted RBP14.73□□□□□ -0.05
SYNE2-227ENST00000557307 PPP2R1AP30153 589 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 DDR1Q08345 913 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 IL17REQ8NFR9 667 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 RSPH6AQ9H0K4 717 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 ZBTB1Q9Y2K1 713 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 ATP10DQ9P241 1426 aa14.73□□□□□ -0.05
SYNE2-227ENST00000557307 SOS1Q07889 1333 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-227ENST00000557307 ADRA2BP18089 450 aa14.72□□□□□ -0.05
SYNE2-227ENST00000557307 HMGB2P26583 209 aaKnown RBP14.72□□□□□ -0.05
SYNE2-227ENST00000557307 RFC4P35249 363 aa14.72□□□□□ -0.05
SYNE2-227ENST00000557307 COL11A2P13942 1736 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-227ENST00000557307 PRKAR2BP31323 418 aa14.71□□□□□ -0.05
SYNE2-227ENST00000557307 CCDC87Q9NVE4 849 aa14.71□□□□□ -0.05
SYNE2-227ENST00000557307 CACNA1SQ13698 1873 aa14.71□□□□□ -0.05
SYNE2-227ENST00000557307 COL15A1P39059 1388 aa14.71□□□□□ -0.06
SYNE2-227ENST00000557307 KDM3BQ7LBC6 1761 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 A0A0G2JLW4 131 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 KCNQ3O43525 872 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 GRIN3BO60391 1043 aa14.7□□□□□ -0.06
SYNE2-227ENST00000557307 USPL1Q5W0Q7 1092 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms