RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 MYL6BP14649 208 aa7.42□□□□□ -1.22
SYNE2-225ENST00000557060 TOM1L2Q6ZVM7 507 aa7.42□□□□□ -1.22
SYNE2-225ENST00000557060 NFATC2IPQ8NCF5 419 aa7.42□□□□□ -1.22
SYNE2-225ENST00000557060 DDX54Q8TDD1 881 aaKnown RBP7.42□□□□□ -1.22
SYNE2-225ENST00000557060 SLKQ9H2G2 1235 aaPredicted RBP7.42□□□□□ -1.22
SYNE2-225ENST00000557060 KIAA0232Q92628 1395 aa7.42□□□□□ -1.22
SYNE2-225ENST00000557060 ERBB3P21860 1342 aa7.41□□□□□ -1.22
SYNE2-225ENST00000557060 AAMPQ13685 434 aa7.41□□□□□ -1.22
SYNE2-225ENST00000557060 SMC5Q8IY18 1101 aa7.41□□□□□ -1.22
SYNE2-225ENST00000557060 NUCB1Q02818 461 aa7.41□□□□□ -1.22
SYNE2-225ENST00000557060 ARXQ96QS3 562 aa7.41□□□□□ -1.22
SYNE2-225ENST00000557060 ZNF330Q9Y3S2 320 aaPredicted RBP7.41□□□□□ -1.22
SYNE2-225ENST00000557060 PI4KAP2A4QPH2 592 aa7.4□□□□□ -1.22
SYNE2-225ENST00000557060 ATXN8OSP0DMR3 200 aa7.4□□□□□ -1.22
SYNE2-225ENST00000557060 PROSER3Q2NL68 480 aa7.4□□□□□ -1.22
SYNE2-225ENST00000557060 PI4KAP1Q8N8J0 262 aa7.4□□□□□ -1.22
SYNE2-225ENST00000557060 ZNF142P52746 1687 aaPredicted RBP7.4□□□□□ -1.22
SYNE2-225ENST00000557060 EVA1CP58658 441 aa7.4□□□□□ -1.22
SYNE2-225ENST00000557060 AKAP4Q5JQC9 854 aa7.4□□□□□ -1.22
SYNE2-225ENST00000557060 RNMTO43148 476 aaKnown RBP7.4□□□□□ -1.23
SYNE2-225ENST00000557060 TATP17735 454 aaPredicted RBP7.4□□□□□ -1.23
SYNE2-225ENST00000557060 INTS3Q68E01 1043 aaKnown RBP7.4□□□□□ -1.23
SYNE2-225ENST00000557060 JARID2Q92833 1246 aaPredicted RBP7.4□□□□□ -1.23
SYNE2-225ENST00000557060 CHMP4BQ9H444 224 aaKnown RBP7.4□□□□□ -1.23
SYNE2-225ENST00000557060 LRRFIP2Q9Y608 721 aaKnown RBP7.4□□□□□ -1.23
SYNE2-225ENST00000557060 MST1RQ04912 1400 aa7.4□□□□□ -1.23
SYNE2-225ENST00000557060 BRPF1P55201 1214 aaPredicted RBP7.39□□□□□ -1.23
SYNE2-225ENST00000557060 EIF4A1P60842 406 aaKnown RBP7.39□□□□□ -1.23
SYNE2-225ENST00000557060 RTL5Q5HYW3 569 aaPredicted RBP7.39□□□□□ -1.23
SYNE2-225ENST00000557060 CEP85Q6P2H3 762 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 LTN1O94822 1766 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 PXDNQ92626 1479 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 PTPRCP08575 1304 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 KAT6BQ8WYB5 2073 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 AMOTQ4VCS5 1084 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 DDRGK1Q96HY6 314 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 IL1RAPL2Q9NP60 686 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 PNMA6EA0A0J9YXQ4 647 aa7.39□□□□□ -1.23
SYNE2-225ENST00000557060 PTCD1O75127 700 aaKnown RBP7.39□□□□□ -1.23
SYNE2-225ENST00000557060 RTL1A6NKG5 1358 aa7.38□□□□□ -1.23
SYNE2-225ENST00000557060 HTATSF1O43719 755 aaKnown RBP7.38□□□□□ -1.23
SYNE2-225ENST00000557060 CWF19L2Q2TBE0 894 aaKnown RBP7.38□□□□□ -1.23
SYNE2-225ENST00000557060 GCC1Q96CN9 775 aa7.38□□□□□ -1.23
SYNE2-225ENST00000557060 NFAT5O94916 1531 aa7.38□□□□□ -1.23
SYNE2-225ENST00000557060 GNAI2P04899 355 aa7.38□□□□□ -1.23
SYNE2-225ENST00000557060 NBPF7P0C2Y1 421 aaPredicted RBP7.38□□□□□ -1.23
SYNE2-225ENST00000557060 UBTFL1P0CB47 393 aaPredicted RBP7.38□□□□□ -1.23
SYNE2-225ENST00000557060 NWD1Q149M9 1564 aa7.38□□□□□ -1.23
SYNE2-225ENST00000557060 RGPD2P0DJD1 1756 aa7.38□□□□□ -1.23
SYNE2-225ENST00000557060 CCT4P50991 539 aaKnown RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 PIP4K2BP78356 416 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 ANKRD44Q8N8A2 993 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 U3KPZ7 1027 aaPredicted RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 SPATA31A3Q5VYP0 1347 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 RGPD1P0DJD0 1748 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 KIF24Q5T7B8 1368 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 RGS12O14924 1447 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 LARP1Q6PKG0 1096 aaKnown RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 TTC5Q8N0Z6 440 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 C22orf23Q9BZE7 217 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 CYP27B1O15528 508 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 ADAMTS2O95450 1211 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 MAP4K4O95819 1239 aaPredicted RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 SYTL4Q96C24 671 aaPredicted RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 ZNF496Q96IT1 587 aaPredicted RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 SRCIN1Q9C0H9 1055 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 C9orf78Q9NZ63 289 aaPredicted RBP7.37□□□□□ -1.23
SYNE2-225ENST00000557060 SPG7Q9UQ90 795 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 MAP3K2Q9Y2U5 619 aa7.37□□□□□ -1.23
SYNE2-225ENST00000557060 HMMRO75330 724 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 GIGYF1O75420 1035 aaPredicted RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 CABP4P57796 275 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 OS9Q13438 667 aaPredicted RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 USP44Q9H0E7 712 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 MARF1Q9Y4F3 1742 aaKnown RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 NUTM2BA6NNL0 878 aaPredicted RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 NUTM2EB1AL46 878 aaPredicted RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 SRGAP3O43295 1099 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 SURF6O75683 361 aaKnown RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 PHKG2P15735 406 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 ZNF790Q6PG37 636 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 NUTM2AQ8IVF1 878 aaPredicted RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 RPAP2Q8IXW5 612 aaPredicted RBP7.36□□□□□ -1.23
SYNE2-225ENST00000557060 DCTPP1Q9H773 170 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 USP16Q9Y5T5 823 aa7.36□□□□□ -1.23
SYNE2-225ENST00000557060 TRIM6-TRIM34B2RNG4 842 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 TBC1D9Q6ZT07 1266 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 RIC3Q7Z5B4 369 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 IFNL2Q8IZJ0 200 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 DNAAF4Q8WXU2 420 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 RILPL2Q969X0 211 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 CCDC9Q9Y3X0 531 aaKnown RBP7.35□□□□□ -1.23
SYNE2-225ENST00000557060 STRCP1A6NGW2 1772 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 CEMIPQ8WUJ3 1361 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 GSPT1P15170 499 aaKnown RBP7.35□□□□□ -1.23
SYNE2-225ENST00000557060 NUTM1Q86Y26 1132 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 PLEKHM2Q8IWE5 1019 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 DBF4Q9UBU7 674 aaPredicted RBP7.35□□□□□ -1.23
SYNE2-225ENST00000557060 TNS3Q68CZ2 1445 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 ATP5J2-PTCD1G3V325 749 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms