RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 TOGARAM1Q9Y4F4 1720 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 CYP27B1O15528 508 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 SSFA2P28290 1259 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 LINC00116Q8NCU8 138 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 BCS1LQ9Y276 419 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 PXDNLA1KZ92 1463 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 SMG6Q86US8 1419 aaKnown RBP13.13□□□□□ -0.31
SYNE2-224ENST00000557024 MMP10P09238 476 aa13.13□□□□□ -0.31
SYNE2-224ENST00000557024 ARHGAP27Q6ZUM4 889 aa13.13□□□□□ -0.31
SYNE2-224ENST00000557024 PIGBQ92521 554 aa13.13□□□□□ -0.31
SYNE2-224ENST00000557024 KLRG1Q96E93 195 aa13.13□□□□□ -0.31
SYNE2-224ENST00000557024 RGPD2P0DJD1 1756 aa13.12□□□□□ -0.31
SYNE2-224ENST00000557024 A0A0G2JLW4 131 aa13.12□□□□□ -0.31
SYNE2-224ENST00000557024 GNPATO15228 680 aa13.12□□□□□ -0.31
SYNE2-224ENST00000557024 LOC102724428A0A0B4J2F2 783 aa13.11□□□□□ -0.31
SYNE2-224ENST00000557024 SIK1P57059 783 aa13.11□□□□□ -0.31
SYNE2-224ENST00000557024 C16orf71Q8IYS4 520 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-224ENST00000557024 TNS4Q8IZW8 715 aa13.11□□□□□ -0.31
SYNE2-224ENST00000557024 RBM46Q8TBY0 533 aaKnown RBP13.11□□□□□ -0.31
SYNE2-224ENST00000557024 ITPK1Q13572 414 aa13.1□□□□□ -0.31
SYNE2-224ENST00000557024 HSP90AB2PQ58FF8 381 aa13.1□□□□□ -0.31
SYNE2-224ENST00000557024 JMYQ8N9B5 988 aa13.1□□□□□ -0.31
SYNE2-224ENST00000557024 PUS7Q96PZ0 661 aaKnown RBP13.1□□□□□ -0.31
SYNE2-224ENST00000557024 TAF1LQ8IZX4 1826 aa13.1□□□□□ -0.31
SYNE2-224ENST00000557024 FCHSD2O94868 740 aa13.09□□□□□ -0.31
SYNE2-224ENST00000557024 TGFB2P61812 414 aa13.09□□□□□ -0.31
SYNE2-224ENST00000557024 C9orf131Q5VYM1 1079 aa13.09□□□□□ -0.31
SYNE2-224ENST00000557024 GGNBP2Q9H3C7 697 aa13.09□□□□□ -0.31
SYNE2-224ENST00000557024 UBR3Q6ZT12 1888 aa13.08□□□□□ -0.32
SYNE2-224ENST00000557024 DPEP1P16444 411 aa13.08□□□□□ -0.32
SYNE2-224ENST00000557024 ASAP1Q9ULH1 1129 aa13.08□□□□□ -0.32
SYNE2-224ENST00000557024 WDR90Q96KV7 1748 aa13.08□□□□□ -0.32
SYNE2-224ENST00000557024 INSRP06213 1382 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 C10orf71Q711Q0 1435 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 FYB1O15117 783 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 SLC24A1O60721 1099 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 ATP6V1AP38606 617 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 PRELPP51888 382 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 FSTL1Q12841 308 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 TMOD3Q9NYL9 352 aa13.07□□□□□ -0.32
SYNE2-224ENST00000557024 TMF1P82094 1093 aa13.06□□□□□ -0.32
SYNE2-224ENST00000557024 FLT4P35916 1363 aa13.06□□□□□ -0.32
SYNE2-224ENST00000557024 KCPQ6ZWJ8 1503 aa13.05□□□□□ -0.32
SYNE2-224ENST00000557024 NKX1-1Q15270 411 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-224ENST00000557024 IFNLR1Q8IU57 520 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-224ENST00000557024 NLGN1Q8N2Q7 840 aa13.05□□□□□ -0.32
SYNE2-224ENST00000557024 TESK2Q96S53 571 aa13.05□□□□□ -0.32
SYNE2-224ENST00000557024 CCDC87Q9NVE4 849 aa13.05□□□□□ -0.32
SYNE2-224ENST00000557024 PLEKHG2Q9H7P9 1386 aa13.05□□□□□ -0.32
SYNE2-224ENST00000557024 KIAA1551Q9HCM1 1747 aa13.05□□□□□ -0.32
SYNE2-224ENST00000557024 TRAPPC3LQ5T215 181 aa13.04□□□□□ -0.32
SYNE2-224ENST00000557024 CHRDL2Q6WN34 429 aa13.04□□□□□ -0.32
SYNE2-224ENST00000557024 RRAGCQ9HB90 399 aa13.04□□□□□ -0.32
SYNE2-224ENST00000557024 SPG7Q9UQ90 795 aa13.04□□□□□ -0.32
SYNE2-224ENST00000557024 RTCBQ9Y3I0 505 aaKnown RBP13.04□□□□□ -0.32
SYNE2-224ENST00000557024 KDM2BQ8NHM5 1336 aa13.04□□□□□ -0.32
SYNE2-224ENST00000557024 N4BP2Q86UW6 1770 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-224ENST00000557024 KCNA3P22001 575 aa13.03□□□□□ -0.32
SYNE2-224ENST00000557024 ATG3Q9NT62 314 aa13.03□□□□□ -0.32
SYNE2-224ENST00000557024 RNF181Q9P0P0 153 aa13.03□□□□□ -0.32
SYNE2-224ENST00000557024 MAP2P11137 1827 aaKnown RBP13.02□□□□□ -0.32
SYNE2-224ENST00000557024 ST20-MTHFSA0A0A6YYL1 179 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 SPDYE2BA6NHP3 402 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 SPDYE6P0CI01 402 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 GYS1P13807 737 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 SPDYE2Q495Y8 402 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 ARHGEF1Q92888 912 aaKnown RBP13.02□□□□□ -0.33
SYNE2-224ENST00000557024 EMILIN1Q9Y6C2 1016 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 PARP3Q9Y6F1 533 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 ITGB4P16144 1822 aa13.02□□□□□ -0.33
SYNE2-224ENST00000557024 PCNTO95613 3336 aa13.01□□□□□ -0.33
SYNE2-224ENST00000557024 SMC1BQ8NDV3 1235 aa13.01□□□□□ -0.33
SYNE2-224ENST00000557024 DCAF5Q96JK2 942 aa13.01□□□□□ -0.33
SYNE2-224ENST00000557024 PIM2Q9P1W9 311 aa13.01□□□□□ -0.33
SYNE2-224ENST00000557024 KIF24Q5T7B8 1368 aa13.01□□□□□ -0.33
SYNE2-224ENST00000557024 KIF13BQ9NQT8 1826 aa13.01□□□□□ -0.33
SYNE2-224ENST00000557024 PKD1L3Q7Z443 1732 aa13□□□□□ -0.33
SYNE2-224ENST00000557024 KDRP35968 1356 aa13□□□□□ -0.33
SYNE2-224ENST00000557024 PPM1GO15355 546 aaPredicted RBP13□□□□□ -0.33
SYNE2-224ENST00000557024 HSPA1AP0DMV8 641 aaKnown RBP13□□□□□ -0.33
SYNE2-224ENST00000557024 HSPA1BP0DMV9 641 aaKnown RBP13□□□□□ -0.33
SYNE2-224ENST00000557024 PHKG2P15735 406 aa13□□□□□ -0.33
SYNE2-224ENST00000557024 RFC4P35249 363 aa13□□□□□ -0.33
SYNE2-224ENST00000557024 DALRD3Q5D0E6 543 aaKnown RBP13□□□□□ -0.33
SYNE2-224ENST00000557024 SLC4A9Q96Q91 983 aa13□□□□□ -0.33
SYNE2-224ENST00000557024 SSUH2Q9Y2M2 353 aa13□□□□□ -0.33
SYNE2-224ENST00000557024 NCAPD2Q15021 1401 aa12.99□□□□□ -0.33
SYNE2-224ENST00000557024 IFNL2Q8IZJ0 200 aa12.99□□□□□ -0.33
SYNE2-224ENST00000557024 C4AP0C0L4 1744 aa12.99□□□□□ -0.33
SYNE2-224ENST00000557024 RPS6KA4O75676 772 aa12.98□□□□□ -0.33
SYNE2-224ENST00000557024 CHRNA5P30532 468 aa12.98□□□□□ -0.33
SYNE2-224ENST00000557024 EYA1Q99502 592 aa12.98□□□□□ -0.33
SYNE2-224ENST00000557024 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.33
SYNE2-224ENST00000557024 CNTNAP4Q9C0A0 1308 aa12.97□□□□□ -0.33
SYNE2-224ENST00000557024 RC3H1Q5TC82 1133 aaKnown RBP12.97□□□□□ -0.33
SYNE2-224ENST00000557024 TONSLQ96HA7 1378 aa12.96□□□□□ -0.33
SYNE2-224ENST00000557024 RASSF7Q02833 373 aa12.96□□□□□ -0.33
SYNE2-224ENST00000557024 DDR1Q08345 913 aa12.96□□□□□ -0.33
SYNE2-224ENST00000557024 SRP68Q9UHB9 627 aaKnown RBP12.96□□□□□ -0.33
SYNE2-224ENST00000557024 REM2Q8IYK8 340 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms