RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CDC42BPBQ9Y5S2 1711 aa16.43■□□□□ 0.22
SHMT2-226ENST00000556825 OTUD6BQ8N6M0 293 aa16.43■□□□□ 0.22
SHMT2-226ENST00000556825 ITFG2Q969R8 447 aa16.43■□□□□ 0.22
SHMT2-226ENST00000556825 PSD3Q9NYI0 1048 aa16.43■□□□□ 0.22
SHMT2-226ENST00000556825 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.43■□□□□ 0.22
SHMT2-226ENST00000556825 AK7Q96M32 723 aa16.42■□□□□ 0.22
SHMT2-226ENST00000556825 CPP00450 1065 aa16.42■□□□□ 0.22
SHMT2-226ENST00000556825 HCLS1P14317 486 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-226ENST00000556825 SPC24Q8NBT2 197 aa16.42■□□□□ 0.22
SHMT2-226ENST00000556825 CHAMP1Q96JM3 812 aa16.42■□□□□ 0.22
SHMT2-226ENST00000556825 UBXN6Q9BZV1 441 aa16.42■□□□□ 0.22
SHMT2-226ENST00000556825 ADGRL2O95490 1459 aa16.42■□□□□ 0.22
SHMT2-226ENST00000556825 IVLP07476 585 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 PREX2Q70Z35 1606 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 AP5Z1O43299 807 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 LIG1P18858 919 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 PTGS1P23219 599 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 TPD52L1Q16890 204 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-226ENST00000556825 BMP2KLQ5H9B9 411 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 EXOC6BQ9Y2D4 811 aa16.41■□□□□ 0.22
SHMT2-226ENST00000556825 SCAF11Q99590 1463 aaKnown RBP16.4■□□□□ 0.22
SHMT2-226ENST00000556825 SLU7O95391 586 aaKnown RBP16.4■□□□□ 0.22
SHMT2-226ENST00000556825 ZBTB12Q9Y330 459 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-226ENST00000556825 ERBB3P21860 1342 aa16.4■□□□□ 0.22
SHMT2-226ENST00000556825 ZCCHC11Q5TAX3 1644 aaKnown RBP16.4■□□□□ 0.22
SHMT2-226ENST00000556825 EIF3CLB5ME19 914 aaKnown RBP16.39■□□□□ 0.22
SHMT2-226ENST00000556825 TSPY4P0CV99 314 aa16.39■□□□□ 0.22
SHMT2-226ENST00000556825 TSPY10P0CW01 314 aa16.39■□□□□ 0.22
SHMT2-226ENST00000556825 ACTN2P35609 894 aa16.39■□□□□ 0.22
SHMT2-226ENST00000556825 RARSP54136 660 aaKnown RBP16.39■□□□□ 0.22
SHMT2-226ENST00000556825 EIF3CQ99613 913 aaKnown RBP16.39■□□□□ 0.22
SHMT2-226ENST00000556825 TAOK2Q9UL54 1235 aa16.39■□□□□ 0.22
SHMT2-226ENST00000556825 ZRANB2O95218 330 aaKnown RBP eCLIP16.39■□□□□ 0.211e-7■□□□□ 9.4
SHMT2-226ENST00000556825 CLCN6P51797 869 aa16.39■□□□□ 0.21
SHMT2-226ENST00000556825 PLCB2Q00722 1185 aa16.39■□□□□ 0.21
SHMT2-226ENST00000556825 TNNQ9UQP3 1299 aa16.39■□□□□ 0.21
SHMT2-226ENST00000556825 H0YHG0 523 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 MPHOSPH10O00566 681 aaKnown RBP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 HNRNPMP52272 730 aaKnown RBP eCLIP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 SARNPP82979 210 aaKnown RBP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 CCDC183Q5T5S1 534 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 ZGPATQ8N5A5 531 aaKnown RBP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 EXOC4Q96A65 974 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 ATP8B1O43520 1251 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 HMGB1P09429 215 aaKnown RBP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 MVPQ14764 893 aaKnown RBP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 REXO1L1PQ8IX06 675 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 SHANK2Q9UPX8 1470 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.38■□□□□ 0.21
SHMT2-226ENST00000556825 ARHGEF5Q12774 1597 aa16.38■□□□□ 0.21
SHMT2-226ENST00000556825 CORO7P57737 925 aa16.37■□□□□ 0.21
SHMT2-226ENST00000556825 APAF1O14727 1248 aa16.37■□□□□ 0.21
SHMT2-226ENST00000556825 C9orf84Q5VXU9 1444 aa16.37■□□□□ 0.21
SHMT2-226ENST00000556825 TTC37Q6PGP7 1564 aa16.37■□□□□ 0.21
SHMT2-226ENST00000556825 ZSCAN16Q9H4T2 348 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-226ENST00000556825 MYO5CQ9NQX4 1742 aa16.37■□□□□ 0.21
SHMT2-226ENST00000556825 SAMD9LQ8IVG5 1584 aa16.36■□□□□ 0.21
SHMT2-226ENST00000556825 KIF2AO00139 706 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-226ENST00000556825 TACO1Q9BSH4 297 aaKnown RBP16.36■□□□□ 0.21
SHMT2-226ENST00000556825 MRVI1Q9Y6F6 885 aa16.36■□□□□ 0.21
SHMT2-226ENST00000556825 PPP2R1AP30153 589 aa16.35■□□□□ 0.21
SHMT2-226ENST00000556825 DMRT2Q9Y5R5 561 aa16.35■□□□□ 0.21
SHMT2-226ENST00000556825 U2SURPO15042 1029 aaKnown RBP16.35■□□□□ 0.21
SHMT2-226ENST00000556825 INHBEP58166 350 aa16.35■□□□□ 0.21
SHMT2-226ENST00000556825 TBC1D9Q6ZT07 1266 aa16.35■□□□□ 0.21
SHMT2-226ENST00000556825 FAM210AQ96ND0 272 aa16.35■□□□□ 0.21
SHMT2-226ENST00000556825 CCDC171Q6TFL3 1326 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 ANKRD33BA6NCL7 494 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 ARID4AP29374 1257 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-226ENST00000556825 NUCB1Q02818 461 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 ZC3H12AQ5D1E8 599 aaKnown RBP16.34■□□□□ 0.21
SHMT2-226ENST00000556825 NBPF3Q9H094 633 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 ARHGAP5Q13017 1502 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 ANKRD50Q9ULJ7 1429 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 TPM1P09493 284 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 MX1P20591 662 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 OAS2P29728 719 aaKnown RBP16.34■□□□□ 0.21
SHMT2-226ENST00000556825 TMCO3Q6UWJ1 677 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 CCDC186Q7Z3E2 898 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 CCDC146Q8IYE0 955 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 PSMD1Q99460 953 aa16.34■□□□□ 0.21
SHMT2-226ENST00000556825 C21orf2O43822 256 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 RPS6KA5O75582 802 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 SMC2O95347 1197 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 BRD1O95696 1058 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 LRMPQ12912 555 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 PKD2Q13563 968 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 LEKR1Q6ZMV7 388 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 DNAAF4Q8WXU2 420 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 GADD45BO75293 160 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-226ENST00000556825 ZSCAN25Q6NSZ9 544 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 ZNF428Q96B54 188 aa16.33■□□□□ 0.2
SHMT2-226ENST00000556825 ZCCHC17Q9NP64 241 aaKnown RBP16.33■□□□□ 0.2
SHMT2-226ENST00000556825 ARGLU1Q9NWB6 273 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-226ENST00000556825 GPRASP1Q5JY77 1395 aa16.32■□□□□ 0.2
SHMT2-226ENST00000556825 SCP2P22307 547 aa16.32■□□□□ 0.2
SHMT2-226ENST00000556825 LMAN1P49257 510 aa16.32■□□□□ 0.2
SHMT2-226ENST00000556825 NYAP1Q6ZVC0 841 aa16.32■□□□□ 0.2
SHMT2-226ENST00000556825 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.32■□□□□ 0.2
SHMT2-226ENST00000556825 FUCA2Q9BTY2 467 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms