RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 NOD1Q9Y239 953 aa11.02□□□□□ -0.65
PRPF39-209ENST00000556353 H7C1W4 665 aa11.01□□□□□ -0.65
PRPF39-209ENST00000556353 INHAP05111 366 aa11.01□□□□□ -0.65
PRPF39-209ENST00000556353 PHKA2P46019 1235 aa11.01□□□□□ -0.65
PRPF39-209ENST00000556353 RNFT1Q5M7Z0 435 aa11.01□□□□□ -0.65
PRPF39-209ENST00000556353 PROSER2Q86WR7 435 aaPredicted RBP11.01□□□□□ -0.65
PRPF39-209ENST00000556353 ZNF837Q96EG3 531 aaPredicted RBP11.01□□□□□ -0.65
PRPF39-209ENST00000556353 NCOA4Q13772 614 aa11□□□□□ -0.65
PRPF39-209ENST00000556353 FOXR1Q6PIV2 292 aa11□□□□□ -0.65
PRPF39-209ENST00000556353 USP17L5A8MUK1 530 aa10.99□□□□□ -0.65
PRPF39-209ENST00000556353 F11P03951 625 aa10.99□□□□□ -0.65
PRPF39-209ENST00000556353 DBN1Q16643 649 aa10.99□□□□□ -0.65
PRPF39-209ENST00000556353 PPARGC1BQ86YN6 1023 aaKnown RBP10.99□□□□□ -0.65
PRPF39-209ENST00000556353 RHBDD1Q8TEB9 315 aa10.99□□□□□ -0.65
PRPF39-209ENST00000556353 A0A1B0GTH6 734 aa10.98□□□□□ -0.65
PRPF39-209ENST00000556353 GTF2IP78347 998 aa10.98□□□□□ -0.65
PRPF39-209ENST00000556353 C4orf17Q53FE4 359 aa10.98□□□□□ -0.65
PRPF39-209ENST00000556353 DEPDC4Q8N2C3 294 aa10.98□□□□□ -0.65
PRPF39-209ENST00000556353 FNBP4Q8N3X1 1017 aaPredicted RBP10.98□□□□□ -0.65
PRPF39-209ENST00000556353 PCDHGA11Q9Y5H2 935 aa10.98□□□□□ -0.65
PRPF39-209ENST00000556353 SERTAD1Q9UHV2 236 aa10.97□□□□□ -0.65
PRPF39-209ENST00000556353 TMEM229AB2RXF0 380 aa10.96□□□□□ -0.65
PRPF39-209ENST00000556353 PSME1Q06323 249 aa10.96□□□□□ -0.65
PRPF39-209ENST00000556353 GPAMQ9HCL2 828 aa10.96□□□□□ -0.65
PRPF39-209ENST00000556353 A6NJR5 290 aa10.95□□□□□ -0.66
PRPF39-209ENST00000556353 SMTNP53814 917 aa10.95□□□□□ -0.66
PRPF39-209ENST00000556353 TBC1D9Q6ZT07 1266 aa10.95□□□□□ -0.66
PRPF39-209ENST00000556353 GTPBP3Q969Y2 492 aaKnown RBP10.95□□□□□ -0.66
PRPF39-209ENST00000556353 UCN2Q96RP3 112 aa10.95□□□□□ -0.66
PRPF39-209ENST00000556353 NUCKS1Q9H1E3 243 aaKnown RBP10.95□□□□□ -0.66
PRPF39-209ENST00000556353 GPR25O00155 361 aa10.94□□□□□ -0.66
PRPF39-209ENST00000556353 PLEKHM2Q8IWE5 1019 aa10.94□□□□□ -0.66
PRPF39-209ENST00000556353 TRERF1Q96PN7 1200 aa10.94□□□□□ -0.66
PRPF39-209ENST00000556353 SLC4A9Q96Q91 983 aa10.94□□□□□ -0.66
PRPF39-209ENST00000556353 USP17L3A6NCW0 530 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 USP17L4A6NCW7 530 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 ATP9BO43861 1147 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 GAS6Q14393 721 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 USP17L2Q6R6M4 530 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 USP17L1Q7RTZ2 530 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 TRIM50Q86XT4 487 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 GLMNQ92990 594 aa10.93□□□□□ -0.66
PRPF39-209ENST00000556353 A6NJY4 79 aa10.92□□□□□ -0.66
PRPF39-209ENST00000556353 BACH1O14867 736 aa10.92□□□□□ -0.66
PRPF39-209ENST00000556353 SLURP2P0DP57 97 aa10.92□□□□□ -0.66
PRPF39-209ENST00000556353 CSB-PGBD3P0DP91 1061 aa10.92□□□□□ -0.66
PRPF39-209ENST00000556353 PLA2G4AP47712 749 aa10.92□□□□□ -0.66
PRPF39-209ENST00000556353 PGBD3Q8N328 593 aa10.92□□□□□ -0.66
PRPF39-209ENST00000556353 NIFKQ9BYG3 293 aaKnown RBP10.92□□□□□ -0.66
PRPF39-209ENST00000556353 MSX1P28360 303 aa10.91□□□□□ -0.66
PRPF39-209ENST00000556353 SRSF11Q05519 484 aaKnown RBP10.91□□□□□ -0.66
PRPF39-209ENST00000556353 MTFR1Q15390 333 aa10.91□□□□□ -0.66
PRPF39-209ENST00000556353 CDK2AP1O14519 115 aa10.9□□□□□ -0.66
PRPF39-209ENST00000556353 ADAMTS2O95450 1211 aa10.9□□□□□ -0.66
PRPF39-209ENST00000556353 ATP1A2P50993 1020 aa10.9□□□□□ -0.66
PRPF39-209ENST00000556353 RUBCNLQ9H714 662 aa10.9□□□□□ -0.66
PRPF39-209ENST00000556353 MBIPQ9NS73 344 aa10.9□□□□□ -0.66
PRPF39-209ENST00000556353 LBRQ14739 615 aaKnown RBP10.89□□□□□ -0.67
PRPF39-209ENST00000556353 SVOPQ8N4V2 548 aa10.89□□□□□ -0.67
PRPF39-209ENST00000556353 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.89□□□□□ -0.67
PRPF39-209ENST00000556353 CALR3Q96L12 384 aaKnown RBP10.89□□□□□ -0.67
PRPF39-209ENST00000556353 ZNF358Q9NW07 568 aa10.89□□□□□ -0.67
PRPF39-209ENST00000556353 EFHC2Q5JST6 749 aa10.88□□□□□ -0.67
PRPF39-209ENST00000556353 ZNF385CQ66K41 422 aaPredicted RBP10.88□□□□□ -0.67
PRPF39-209ENST00000556353 AIDAQ96BJ3 306 aa10.88□□□□□ -0.67
PRPF39-209ENST00000556353 IQSEC3Q9UPP2 1182 aaPredicted RBP10.88□□□□□ -0.67
PRPF39-209ENST00000556353 THBS1P07996 1170 aa10.87□□□□□ -0.67
PRPF39-209ENST00000556353 C1orf216Q8TAB5 229 aa10.87□□□□□ -0.67
PRPF39-209ENST00000556353 MKRN1Q9UHC7 482 aaKnown RBP10.87□□□□□ -0.67
PRPF39-209ENST00000556353 TPCN2Q8NHX9 752 aa10.86□□□□□ -0.67
PRPF39-209ENST00000556353 WHAMMQ8TF30 809 aa10.86□□□□□ -0.67
PRPF39-209ENST00000556353 CRISPLD1Q9H336 500 aa10.86□□□□□ -0.67
PRPF39-209ENST00000556353 DNAAF2Q9NVR5 837 aaKnown RBP10.86□□□□□ -0.67
PRPF39-209ENST00000556353 CABP1Q9NZU7 370 aa10.86□□□□□ -0.67
PRPF39-209ENST00000556353 TFIP11Q9UBB9 837 aaKnown RBP10.86□□□□□ -0.67
PRPF39-209ENST00000556353 PHF24Q9UPV7 400 aa10.86□□□□□ -0.67
PRPF39-209ENST00000556353 MX2P20592 715 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 CLDN10P78369 228 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 NBPF1Q3BBV0 1214 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 CCDC102BQ68D86 513 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 ZNF295-AS1Q8N0V1 137 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 OGFOD1Q8N543 542 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 CFHR5Q9BXR6 569 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 NSFL1CQ9UNZ2 370 aaKnown RBP10.85□□□□□ -0.67
PRPF39-209ENST00000556353 KIAA1024Q9UPX6 916 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 USP3Q9Y6I4 520 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 IGF1RP08069 1367 aa10.85□□□□□ -0.67
PRPF39-209ENST00000556353 ZBTB7BO15156 539 aaPredicted RBP10.84□□□□□ -0.67
PRPF39-209ENST00000556353 LARGE2Q8N3Y3 721 aa10.84□□□□□ -0.67
PRPF39-209ENST00000556353 SCHIP1Q9P0W5 487 aaPredicted RBP10.84□□□□□ -0.67
PRPF39-209ENST00000556353 PALM3A6NDB9 673 aaPredicted RBP10.83□□□□□ -0.68
PRPF39-209ENST00000556353 ATP4AP20648 1035 aa10.83□□□□□ -0.68
PRPF39-209ENST00000556353 RBM19Q9Y4C8 960 aaKnown RBP10.83□□□□□ -0.68
PRPF39-209ENST00000556353 MAFBQ9Y5Q3 323 aaPredicted RBP10.83□□□□□ -0.68
PRPF39-209ENST00000556353 TATP17735 454 aaPredicted RBP10.82□□□□□ -0.68
PRPF39-209ENST00000556353 MAP3K10Q02779 954 aa10.82□□□□□ -0.68
PRPF39-209ENST00000556353 UBAP2LQ14157 1087 aaKnown RBP10.82□□□□□ -0.68
PRPF39-209ENST00000556353 LYPD4Q6UWN0 246 aa10.82□□□□□ -0.68
PRPF39-209ENST00000556353 TNS4Q8IZW8 715 aa10.82□□□□□ -0.68
PRPF39-209ENST00000556353 ZDHHC3Q9NYG2 299 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms