RNA–Protein interactions for RNA: ENST00000556303.1

SNX6-207, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-207ENST00000556303 TUBGCP6Q96RT7 1819 aa17.04■□□□□ 0.32
SNX6-207ENST00000556303 SSFA2P28290 1259 aa17.03■□□□□ 0.32
SNX6-207ENST00000556303 CABP4P57796 275 aa17.03■□□□□ 0.32
SNX6-207ENST00000556303 AKAP4Q5JQC9 854 aa17.03■□□□□ 0.32
SNX6-207ENST00000556303 ATP6V1AP38606 617 aa17.02■□□□□ 0.32
SNX6-207ENST00000556303 C4BP0C0L5 1744 aa17.01■□□□□ 0.31
SNX6-207ENST00000556303 KDM6AO15550 1401 aaPredicted RBP17.01■□□□□ 0.31
SNX6-207ENST00000556303 RC3H1Q5TC82 1133 aaKnown RBP17■□□□□ 0.31
SNX6-207ENST00000556303 LINC00116Q8NCU8 138 aa17■□□□□ 0.31
SNX6-207ENST00000556303 ZNF831Q5JPB2 1677 aa17■□□□□ 0.31
SNX6-207ENST00000556303 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.98■□□□□ 0.31
SNX6-207ENST00000556303 ITPK1Q13572 414 aa16.98■□□□□ 0.31
SNX6-207ENST00000556303 NFATC2IPQ8NCF5 419 aa16.98■□□□□ 0.31
SNX6-207ENST00000556303 HMOX1P09601 288 aa16.97■□□□□ 0.31
SNX6-207ENST00000556303 YY1P25490 414 aa16.97■□□□□ 0.31
SNX6-207ENST00000556303 CFAP53Q96M91 514 aa16.97■□□□□ 0.31
SNX6-207ENST00000556303 UBR3Q6ZT12 1888 aa16.97■□□□□ 0.31
SNX6-207ENST00000556303 RBM42Q9BTD8 480 aaKnown RBP16.96■□□□□ 0.31
SNX6-207ENST00000556303 SLC52A2Q9HAB3 445 aa16.96■□□□□ 0.31
SNX6-207ENST00000556303 CD2APQ9Y5K6 639 aa16.96■□□□□ 0.31
SNX6-207ENST00000556303 CNTNAP4Q9C0A0 1308 aa16.96■□□□□ 0.3
SNX6-207ENST00000556303 COL3A1P02461 1466 aaPredicted RBP16.95■□□□□ 0.3
SNX6-207ENST00000556303 GNPATO15228 680 aa16.95■□□□□ 0.3
SNX6-207ENST00000556303 MTHFSDQ2M296 383 aaKnown RBP16.95■□□□□ 0.3
SNX6-207ENST00000556303 SLC4A9Q96Q91 983 aa16.95■□□□□ 0.3
SNX6-207ENST00000556303 RTCBQ9Y3I0 505 aaKnown RBP16.95■□□□□ 0.3
SNX6-207ENST00000556303 RNMTO43148 476 aaKnown RBP16.94■□□□□ 0.3
SNX6-207ENST00000556303 TRAPPC3LQ5T215 181 aa16.94■□□□□ 0.3
SNX6-207ENST00000556303 AMIGO3Q86WK7 504 aa16.94■□□□□ 0.3
SNX6-207ENST00000556303 GAS2L2Q8NHY3 880 aa16.94■□□□□ 0.3
SNX6-207ENST00000556303 NUDCQ9Y266 331 aa16.94■□□□□ 0.3
SNX6-207ENST00000556303 SCN11AQ9UI33 1791 aa16.94■□□□□ 0.3
SNX6-207ENST00000556303 U2SURPO15042 1029 aaKnown RBP16.93■□□□□ 0.3
SNX6-207ENST00000556303 RPS6KA4O75676 772 aa16.93■□□□□ 0.3
SNX6-207ENST00000556303 PHF14O94880 888 aa16.93■□□□□ 0.3
SNX6-207ENST00000556303 MSL1Q68DK7 614 aa16.92■□□□□ 0.3
SNX6-207ENST00000556303 KLHL34Q8N239 644 aa16.92■□□□□ 0.3
SNX6-207ENST00000556303 LGR6Q9HBX8 967 aa16.92■□□□□ 0.3
SNX6-207ENST00000556303 PTCD1O75127 700 aaKnown RBP16.91■□□□□ 0.3
SNX6-207ENST00000556303 GPR162Q16538 588 aa16.91■□□□□ 0.3
SNX6-207ENST00000556303 NLGN1Q8N2Q7 840 aa16.91■□□□□ 0.3
SNX6-207ENST00000556303 MRC1P22897 1456 aa16.91■□□□□ 0.3
SNX6-207ENST00000556303 PPP2R1AP30153 589 aa16.9■□□□□ 0.3
SNX6-207ENST00000556303 CNGB1Q14028 1251 aaPredicted RBP16.9■□□□□ 0.3
SNX6-207ENST00000556303 VSIG10Q8N0Z9 540 aa16.9■□□□□ 0.3
SNX6-207ENST00000556303 GNAT3A8MTJ3 354 aa16.89■□□□□ 0.29
SNX6-207ENST00000556303 GRIN3BO60391 1043 aa16.89■□□□□ 0.29
SNX6-207ENST00000556303 NLGN2Q8NFZ4 835 aa16.89■□□□□ 0.29
SNX6-207ENST00000556303 ARHGEF1Q92888 912 aaKnown RBP16.89■□□□□ 0.29
SNX6-207ENST00000556303 ADAMTS7Q9UKP4 1686 aa16.88■□□□□ 0.29
SNX6-207ENST00000556303 CHD4Q14839 1912 aa16.88■□□□□ 0.29
SNX6-207ENST00000556303 COL5A3P25940 1745 aaPredicted RBP16.88■□□□□ 0.29
SNX6-207ENST00000556303 FCHSD2O94868 740 aa16.88■□□□□ 0.29
SNX6-207ENST00000556303 RFC4P35249 363 aa16.88■□□□□ 0.29
SNX6-207ENST00000556303 CICQ96RK0 1608 aaPredicted RBP16.88■□□□□ 0.29
SNX6-207ENST00000556303 CRKLP46109 303 aaKnown RBP16.87■□□□□ 0.29
SNX6-207ENST00000556303 SMIM5Q71RC9 77 aa16.87■□□□□ 0.29
SNX6-207ENST00000556303 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
SNX6-207ENST00000556303 MYH14Q7Z406 1995 aaKnown RBP16.86■□□□□ 0.29
SNX6-207ENST00000556303 TEFQ10587 303 aa16.85■□□□□ 0.29
SNX6-207ENST00000556303 MMP10P09238 476 aa16.84■□□□□ 0.29
SNX6-207ENST00000556303 U2AF1L5P0DN76 240 aaPredicted RBP16.84■□□□□ 0.29
SNX6-207ENST00000556303 GYS1P13807 737 aa16.84■□□□□ 0.29
SNX6-207ENST00000556303 PRKAR2BP31323 418 aa16.84■□□□□ 0.29
SNX6-207ENST00000556303 U2AF1Q01081 240 aaKnown RBP eCLIP16.84■□□□□ 0.29
SNX6-207ENST00000556303 INTS5Q6P9B9 1019 aaKnown RBP16.84■□□□□ 0.29
SNX6-207ENST00000556303 TTC5Q8N0Z6 440 aa16.84■□□□□ 0.29
SNX6-207ENST00000556303 IL17REQ8NFR9 667 aa16.84■□□□□ 0.29
SNX6-207ENST00000556303 CYP19A1P11511 503 aaPredicted RBP16.83■□□□□ 0.28
SNX6-207ENST00000556303 SLC39A6Q13433 755 aa16.83■□□□□ 0.28
SNX6-207ENST00000556303 VIRMAQ69YN4 1812 aaKnown RBP16.83■□□□□ 0.28
SNX6-207ENST00000556303 DNAJC10Q8IXB1 793 aa16.83■□□□□ 0.28
SNX6-207ENST00000556303 CEMIPQ8WUJ3 1361 aa16.83■□□□□ 0.28
SNX6-207ENST00000556303 TEX13AQ9BXU3 409 aaPredicted RBP16.83■□□□□ 0.28
SNX6-207ENST00000556303 CCDC87Q9NVE4 849 aa16.83■□□□□ 0.28
SNX6-207ENST00000556303 HTATSF1O43719 755 aaKnown RBP16.82■□□□□ 0.28
SNX6-207ENST00000556303 TGFB2P61812 414 aa16.82■□□□□ 0.28
SNX6-207ENST00000556303 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
SNX6-207ENST00000556303 PHACTR3Q96KR7 559 aa16.82■□□□□ 0.28
SNX6-207ENST00000556303 KCPQ6ZWJ8 1503 aa16.81■□□□□ 0.28
SNX6-207ENST00000556303 USP42Q9H9J4 1324 aaKnown RBP16.81■□□□□ 0.28
SNX6-207ENST00000556303 STARD3NLO95772 234 aa16.81■□□□□ 0.28
SNX6-207ENST00000556303 ZNF790Q6PG37 636 aa16.81■□□□□ 0.28
SNX6-207ENST00000556303 PARP3Q9Y6F1 533 aa16.81■□□□□ 0.28
SNX6-207ENST00000556303 SOS1Q07889 1333 aaPredicted RBP16.8■□□□□ 0.28
SNX6-207ENST00000556303 TJP1Q07157 1748 aa16.8■□□□□ 0.28
SNX6-207ENST00000556303 YBX3P16989 372 aaKnown RBP eCLIP16.8■□□□□ 0.285e-10■■□□□ 13
SNX6-207ENST00000556303 RALBP1Q15311 655 aa16.8■□□□□ 0.28
SNX6-207ENST00000556303 RTF1Q92541 710 aaKnown RBP16.8■□□□□ 0.28
SNX6-207ENST00000556303 PNNQ9H307 717 aaKnown RBP16.8■□□□□ 0.28
SNX6-207ENST00000556303 ZPR1O75312 459 aa16.79■□□□□ 0.28
SNX6-207ENST00000556303 NEFMP07197 916 aa16.79■□□□□ 0.28
SNX6-207ENST00000556303 ZNF784Q8NCA9 323 aaPredicted RBP16.79■□□□□ 0.28
SNX6-207ENST00000556303 FMNL2Q96PY5 1086 aa16.78■□□□□ 0.28
SNX6-207ENST00000556303 UBR2Q8IWV8 1755 aa16.78■□□□□ 0.28
SNX6-207ENST00000556303 HEG1Q9ULI3 1381 aa16.77■□□□□ 0.28
SNX6-207ENST00000556303 BTBD11A6QL63 1104 aa16.77■□□□□ 0.28
SNX6-207ENST00000556303 ZNF496Q96IT1 587 aaPredicted RBP16.77■□□□□ 0.28
SNX6-207ENST00000556303 NARFQ9UHQ1 456 aa16.77■□□□□ 0.28
SNX6-207ENST00000556303 KIF13BQ9NQT8 1826 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms