RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ABCA6Q8N139 1617 aa17.93■□□□□ 0.46
CUX1-215ENST00000556210 RNF17Q9BXT8 1623 aaKnown RBP17.93■□□□□ 0.46
CUX1-215ENST00000556210 ISY1Q9ULR0 285 aaKnown RBP17.93■□□□□ 0.46
CUX1-215ENST00000556210 RRP9O43818 475 aaKnown RBP17.93■□□□□ 0.46
CUX1-215ENST00000556210 CPA1P15085 419 aa17.93■□□□□ 0.46
CUX1-215ENST00000556210 CEBPZQ03701 1054 aaKnown RBP17.93■□□□□ 0.46
CUX1-215ENST00000556210 KCNQ3O43525 872 aa17.93■□□□□ 0.46
CUX1-215ENST00000556210 PKP1Q13835 747 aa17.93■□□□□ 0.46
CUX1-215ENST00000556210 ZRSR1Q15695 479 aaKnown RBP17.93■□□□□ 0.46
CUX1-215ENST00000556210 CWF19L2Q2TBE0 894 aaKnown RBP17.93■□□□□ 0.46
CUX1-215ENST00000556210 SPHKAPQ2M3C7 1700 aa17.93■□□□□ 0.46
CUX1-215ENST00000556210 PTPRCP08575 1304 aa17.92■□□□□ 0.46
CUX1-215ENST00000556210 DNAAF4Q8WXU2 420 aa17.92■□□□□ 0.46
CUX1-215ENST00000556210 SYAP1Q96A49 352 aaPredicted RBP17.92■□□□□ 0.46
CUX1-215ENST00000556210 KIF1BO60333 1816 aa17.92■□□□□ 0.46
CUX1-215ENST00000556210 MLH3Q9UHC1 1453 aa17.92■□□□□ 0.46
CUX1-215ENST00000556210 RUFY2Q8WXA3 655 aa17.92■□□□□ 0.46
CUX1-215ENST00000556210 CIZ1Q9ULV3 898 aaPredicted RBP17.92■□□□□ 0.46
CUX1-215ENST00000556210 POLR1AO95602 1720 aaPredicted RBP17.91■□□□□ 0.46
CUX1-215ENST00000556210 ATP5J2-PTCD1G3V325 749 aa17.91■□□□□ 0.46
CUX1-215ENST00000556210 EVA1CP58658 441 aa17.91■□□□□ 0.46
CUX1-215ENST00000556210 DDX17Q92841 729 aaKnown RBP17.91■□□□□ 0.46
CUX1-215ENST00000556210 JAKMIP1Q96N16 626 aaKnown RBP17.91■□□□□ 0.46
CUX1-215ENST00000556210 MAP3K2Q9Y2U5 619 aa17.91■□□□□ 0.46
CUX1-215ENST00000556210 ORAI2Q96SN7 254 aa17.91■□□□□ 0.46
CUX1-215ENST00000556210 ABCC3O15438 1527 aa17.91■□□□□ 0.46
CUX1-215ENST00000556210 PRPF40BQ6NWY9 871 aaKnown RBP17.91■□□□□ 0.46
CUX1-215ENST00000556210 CASTP20810 708 aaKnown RBP17.9■□□□□ 0.46
CUX1-215ENST00000556210 CCDC173Q0VFZ6 552 aa17.9■□□□□ 0.46
CUX1-215ENST00000556210 CHMP4AQ9BY43 222 aa17.9■□□□□ 0.46
CUX1-215ENST00000556210 ANTXR1Q9H6X2 564 aa17.9■□□□□ 0.46
CUX1-215ENST00000556210 HOXC9P31274 260 aa17.89■□□□□ 0.46
CUX1-215ENST00000556210 ROBO2Q9HCK4 1378 aa17.89■□□□□ 0.45
CUX1-215ENST00000556210 EDC4Q6P2E9 1401 aaKnown RBP17.89■□□□□ 0.45
CUX1-215ENST00000556210 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.89■□□□□ 0.45
CUX1-215ENST00000556210 CCDC83Q8IWF9 413 aa17.89■□□□□ 0.45
CUX1-215ENST00000556210 USP26Q9BXU7 913 aa17.89■□□□□ 0.45
CUX1-215ENST00000556210 PPP6R1Q9UPN7 881 aa17.89■□□□□ 0.45
CUX1-215ENST00000556210 H3BQV1 296 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 NBPF7P0C2Y1 421 aaPredicted RBP17.88■□□□□ 0.45
CUX1-215ENST00000556210 IFFO2Q5TF58 517 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 TMX3Q96JJ7 454 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 HSP90AB4PQ58FF6 505 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 KLHDC4Q8TBB5 520 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 TOMM22Q9NS69 142 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 ZFYVE9O95405 1425 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 IL17REQ8NFR9 667 aa17.88■□□□□ 0.45
CUX1-215ENST00000556210 TPM2P07951 284 aa17.87■□□□□ 0.45
CUX1-215ENST00000556210 RHPN1Q8TCX5 695 aa17.87■□□□□ 0.45
CUX1-215ENST00000556210 HDAC5Q9UQL6 1122 aa17.87■□□□□ 0.45
CUX1-215ENST00000556210 RBM25P49756 843 aaKnown RBP17.87■□□□□ 0.45
CUX1-215ENST00000556210 KIF1BPQ96EK5 621 aa17.87■□□□□ 0.45
CUX1-215ENST00000556210 MYD88Q99836 296 aa17.87■□□□□ 0.45
CUX1-215ENST00000556210 FAM184AQ8NB25 1140 aa17.87■□□□□ 0.45
CUX1-215ENST00000556210 NBPF6Q5VWK0 638 aa17.86■□□□□ 0.45
CUX1-215ENST00000556210 NBPF4Q96M43 638 aa17.86■□□□□ 0.45
CUX1-215ENST00000556210 ANKRD24Q8TF21 1146 aa17.86■□□□□ 0.45
CUX1-215ENST00000556210 CEP152O94986 1710 aa17.86■□□□□ 0.45
CUX1-215ENST00000556210 KIAA2012Q0VF49 1180 aa17.85■□□□□ 0.45
CUX1-215ENST00000556210 ABCC4O15439 1325 aa17.85■□□□□ 0.45
CUX1-215ENST00000556210 TSPOAP1O95153 1857 aa17.85■□□□□ 0.45
CUX1-215ENST00000556210 FLT4P35916 1363 aa17.85■□□□□ 0.45
CUX1-215ENST00000556210 NPHP1O15259 732 aa17.85■□□□□ 0.45
CUX1-215ENST00000556210 TATP17735 454 aaPredicted RBP17.85■□□□□ 0.45
CUX1-215ENST00000556210 ZSCAN30Q86W11 494 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 ZMYND15Q9H091 742 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 PPRC1Q5VV67 1664 aaKnown RBP17.84■□□□□ 0.45
CUX1-215ENST00000556210 ATP8B2P98198 1209 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 STK11IPQ8N1F8 1099 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 ESYT1Q9BSJ8 1104 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 NECAB1Q8N987 351 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 BICD2Q8TD16 824 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 DDX11Q96FC9 970 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 NDUFB9Q9Y6M9 179 aa17.84■□□□□ 0.45
CUX1-215ENST00000556210 TULP4Q9NRJ4 1543 aa17.83■□□□□ 0.45
CUX1-215ENST00000556210 CABP4P57796 275 aa17.83■□□□□ 0.45
CUX1-215ENST00000556210 TOM1L2Q6ZVM7 507 aa17.83■□□□□ 0.45
CUX1-215ENST00000556210 APPP05067 770 aa17.83■□□□□ 0.45
CUX1-215ENST00000556210 RAB3GAP1Q15042 981 aa17.83■□□□□ 0.45
CUX1-215ENST00000556210 SNX21Q969T3 373 aa17.83■□□□□ 0.45
CUX1-215ENST00000556210 CWC22Q9HCG8 908 aaKnown RBP17.83■□□□□ 0.45
CUX1-215ENST00000556210 WASHC4Q2M389 1173 aa17.83■□□□□ 0.44
CUX1-215ENST00000556210 NEO1Q92859 1461 aa17.83■□□□□ 0.44
CUX1-215ENST00000556210 GNL2Q13823 731 aaKnown RBP17.82■□□□□ 0.44
CUX1-215ENST00000556210 KRT28Q7Z3Y7 464 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 DBF4Q9UBU7 674 aaPredicted RBP17.82■□□□□ 0.44
CUX1-215ENST00000556210 ZNF853P0CG23 659 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 KAT6BQ8WYB5 2073 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 UNC5CLQ8IV45 518 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 TMEM2Q9UHN6 1383 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 SHROOM2Q13796 1616 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 PALD1Q9ULE6 856 aa17.82■□□□□ 0.44
CUX1-215ENST00000556210 UBE3BQ7Z3V4 1068 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 SPC24Q8NBT2 197 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 NFATC2IPQ8NCF5 419 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 CYP46A1Q9Y6A2 500 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 GCP02774 474 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 PDRG1Q9NUG6 133 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 GLI2P10070 1586 aa17.81■□□□□ 0.44
CUX1-215ENST00000556210 PRAMEF22A3QJZ6 481 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms